Os01g0166100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Ca(2+)-dependent nuclease.
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Os01g0166100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Ca(2+)-dependent nuclease.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 27.77 | 0.248 | 11.1 | -0.125 | 0.124 | -0.658 | 0.438 | 2.8 | 0.363 | 1.9 | 30 | 5599 | -- | -- |
| 29.24 | 0.252 | 11.1 | 0.461 | 0.117 | -0.376 | 0.308 | -- | 0.323 | 2.31 | 29.24 | 5717 | -- | -- |
| 28.49 | 0.249 | 11.1 | -0.145 | 0.124 | -0.668 | -- | 2.82 | 0.362 | 1.95 | 29.95 | 5591 | -- | -- |
| 29.73 | 0.254 | 11.1 | 0.457 | 0.12 | -0.364 | -- | -- | 0.251 | 2.15 | 28.5 | 7146 | -- | -- |
| 29.32 | 0.252 | 11.1 | -0.147 | -- | -0.695 | -- | 2.81 | 0.371 | -- | 29.9 | 5530 | -- | -- |
| 35.34 | 0.279 | 11.1 | 0.61 | 0.149 | -- | 0.508 | -- | 0.367 | 2.13 | -- | -- | -- | -- |
| 36.29 | 0.282 | 11.1 | 0.595 | 0.152 | -- | -- | -- | 0.364 | 2.6 | -- | -- | -- | -- |
| 30.59 | 0.258 | 11.1 | 0.456 | -- | -0.373 | -- | -- | 0.249 | -- | 28.43 | 7060 | -- | -- |
| 35.11 | 0.276 | 11.1 | -- | 0.17 | -0.372 | -- | -- | 0.218 | 2.34 | 28.02 | 7186 | -- | -- |
| 37.65 | 0.287 | 11.1 | 0.601 | -- | -- | -- | -- | 0.368 | -- | -- | -- | -- | -- |
| 45.61 | 0.316 | 11.1 | -- | 0.164 | -- | -- | -- | 0.298 | 2.64 | -- | -- | -- | -- |
| 33.94 | 0.271 | 11.1 | -- | -- | -0.553 | -- | -- | 0.115 | -- | 23.7 | 6701 | -- | -- |
| 47.18 | 0.321 | 11.1 | -- | -- | -- | -- | -- | 0.301 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 26.91 | temperature | 15 | 270 | > th | dose dependent | rect. | 16 | 17 |
| 2 | 26.96 | temperature | 15 | 270 | > th | dose dependent | rect. | 2 | 7 |
| 5 | 27.17 | temperature | 20 | 270 | > th | dose independent | rect. | 3 | 18 |
| 11 | 27.54 | wind | 7 | 43200 | > th | dose dependent | rect. | 13 | 18 |
| 12 | 27.55 | wind | 7 | 43200 | > th | dose independent | rect. | 13 | 17 |
| 14 | 27.56 | wind | 7 | 43200 | > th | dose independent | rect. | 13 | 12 |
| 20 | 27.59 | wind | 7 | 43200 | < th | dose independent | rect. | 13 | 12 |
| 22 | 27.59 | wind | 7 | 43200 | < th | dose independent | rect. | 13 | 17 |
| 26 | 27.60 | wind | 7 | 43200 | > th | dose dependent | rect. | 13 | 14 |
| 29 | 27.61 | wind | 7 | 43200 | > th | dose dependent | rect. | 14 | 7 |
| 30 | 27.61 | wind | 7 | 43200 | > th | dose dependent | rect. | 13 | 12 |
| 33 | 27.62 | wind | 7 | 43200 | > th | dose independent | rect. | 13 | 9 |
| 39 | 27.63 | wind | 7 | 43200 | < th | dose independent | rect. | 13 | 9 |
| 61 | 27.68 | wind | 7 | 43200 | > th | dose independent | sin | 17 | NA |
| 62 | 27.68 | wind | 7 | 43200 | < th | dose independent | sin | 17 | NA |
| 89 | 27.73 | temperature | 20 | 270 | > th | dose independent | rect. | 3 | 6 |
| 94 | 27.73 | wind | 7 | 43200 | > th | dose dependent | sin | 17 | NA |
| 107 | 27.75 | radiation | 1 | 43200 | < th | dose dependent | rect. | 19 | 5 |
| 164 | 27.83 | wind | 5 | 43200 | > th | dose dependent | rect. | 11 | 14 |
| 168 | 27.84 | humidity | 70 | 720 | > th | dose independent | rect. | 17 | 2 |
| 173 | 27.84 | wind | 7 | 43200 | > th | dose dependent | rect. | 10 | 11 |
| 207 | 27.87 | wind | 7 | 43200 | > th | dose independent | rect. | 5 | 16 |
| 214 | 27.88 | wind | 7 | 43200 | < th | dose independent | rect. | 5 | 16 |
| 264 | 27.93 | wind | 7 | 43200 | < th | dose independent | rect. | 17 | 4 |
| 269 | 27.93 | wind | 7 | 43200 | > th | dose independent | rect. | 24 | 21 |
| 270 | 27.93 | wind | 7 | 43200 | > th | dose dependent | rect. | 17 | 4 |
| 295 | 27.95 | wind | 7 | 43200 | < th | dose independent | rect. | 24 | 21 |
| 312 | 27.97 | wind | 7 | 43200 | > th | dose independent | rect. | 17 | 4 |
| 338 | 27.99 | wind | 5 | 43200 | < th | dose independent | rect. | 19 | 2 |
| 350 | 28.00 | wind | 7 | 43200 | < th | dose independent | rect. | 5 | 20 |
| 355 | 28.01 | wind | 5 | 43200 | > th | dose independent | rect. | 19 | 2 |
| 366 | 28.01 | wind | 5 | 43200 | > th | dose dependent | rect. | 20 | 1 |
| 418 | 28.05 | humidity | 70 | 720 | > th | dose independent | rect. | 17 | 10 |
| 481 | 28.09 | humidity | 70 | 720 | > th | dose independent | rect. | 17 | 4 |
| 506 | 28.10 | wind | 9 | 43200 | > th | dose dependent | rect. | 20 | 1 |
| 525 | 28.12 | wind | 7 | 43200 | > th | dose independent | no | NA | NA |
| 548 | 28.13 | wind | 7 | 43200 | > th | dose independent | rect. | 13 | 3 |
| 549 | 28.13 | wind | 7 | 43200 | < th | dose independent | rect. | 13 | 3 |
| 559 | 28.13 | wind | 7 | 43200 | > th | dose independent | rect. | 20 | 23 |
| 573 | 28.15 | wind | 7 | 43200 | < th | dose independent | no | NA | NA |
| 603 | 28.17 | wind | 7 | 43200 | < th | dose independent | rect. | 20 | 23 |
| 660 | 28.22 | wind | 5 | 43200 | > th | dose dependent | rect. | 5 | 16 |
| 702 | 28.25 | wind | 7 | 43200 | > th | dose independent | rect. | 17 | 23 |
| 805 | 28.33 | wind | 5 | 43200 | > th | dose dependent | rect. | 12 | 4 |
| 884 | 28.39 | temperature | 25 | 4320 | < th | dose independent | rect. | 3 | 6 |
| 908 | 28.40 | radiation | 40 | 43200 | > th | dose dependent | rect. | 10 | 1 |
| 944 | 28.42 | temperature | 25 | 1440 | > th | dose dependent | rect. | 15 | 16 |
| 964 | 28.43 | wind | 9 | 43200 | > th | dose dependent | rect. | 18 | 12 |
| 974 | 28.44 | temperature | 25 | 4320 | > th | dose independent | rect. | 3 | 7 |