BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os01g0166100 Os01g0166100|AK103697
(331 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os01g0166100 Similar to Ca(2+)-dependent nuclease 630 0.0
Os12g0255200 Staphylococcus nuclease (SNase-like) domain co... 259 2e-69
Os11g0109500 Staphylococcus nuclease (SNase-like) domain co... 235 4e-62
Os12g0254100 76 3e-14
>Os01g0166100 Similar to Ca(2+)-dependent nuclease
Length = 331
Score = 630 bits (1625), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 307/331 (92%), Positives = 307/331 (92%)
Query: 1 MGNSIYRFLCGLCSPSPEYQPHGAHPAVAALGRDIQQFEATSQVPDGLSRHVVSSKKAQA 60
MGNSIYRFLCGLCSPSPEYQPHGAHPAVAALGRDIQQFEATSQVPDGLSRHVVSSKKAQA
Sbjct: 1 MGNSIYRFLCGLCSPSPEYQPHGAHPAVAALGRDIQQFEATSQVPDGLSRHVVSSKKAQA 60
Query: 61 NWYKKLIVTWKKARPTPRTPEEAARLVVTTLKNHQKADVEGFLVFYGLPIPNXXXXXXXX 120
NWYKKLIVTWKKARPTPRTPEEAARLVVTTLKNHQKADVEGFLVFYGLPIPN
Sbjct: 61 NWYKKLIVTWKKARPTPRTPEEAARLVVTTLKNHQKADVEGFLVFYGLPIPNAAASTPAP 120
Query: 121 XXXXVPKPQGCKFELHTLPVDAKAVADGDTITVYIDTADPRESGNVPREIQKXXXXXXXX 180
VPKPQGCKFELHTLPVDAKAVADGDTITVYIDTADPRESGNVPREIQK
Sbjct: 121 HTAHVPKPQGCKFELHTLPVDAKAVADGDTITVYIDTADPRESGNVPREIQKAAAERTRA 180
Query: 181 XXXXDYQKADGLQKMIADAGYRQVPNARGEEVLAKKYRIRLRGIDAPESAMPYGKEAKEA 240
DYQKADGLQKMIADAGYRQVPNARGEEVLAKKYRIRLRGIDAPESAMPYGKEAKEA
Sbjct: 181 RAARDYQKADGLQKMIADAGYRQVPNARGEEVLAKKYRIRLRGIDAPESAMPYGKEAKEA 240
Query: 241 LLKMVQGKSLKVYVYDEDRYGRCVGDIYCDGVFVQEQMLKKGCAWHYTAYDQRPELAKWE 300
LLKMVQGKSLKVYVYDEDRYGRCVGDIYCDGVFVQEQMLKKGCAWHYTAYDQRPELAKWE
Sbjct: 241 LLKMVQGKSLKVYVYDEDRYGRCVGDIYCDGVFVQEQMLKKGCAWHYTAYDQRPELAKWE 300
Query: 301 KQAQSGRKGLWAASRPQKPWEWRRDKRNGTA 331
KQAQSGRKGLWAASRPQKPWEWRRDKRNGTA
Sbjct: 301 KQAQSGRKGLWAASRPQKPWEWRRDKRNGTA 331
>Os12g0255200 Staphylococcus nuclease (SNase-like) domain containing protein
Length = 495
Score = 259 bits (661), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 131/304 (43%), Positives = 186/304 (61%), Gaps = 6/304 (1%)
Query: 27 AVAALGRDIQQFEATSQVPDGLSRHVVSSKKAQANWYKKLIVTWKKARPTPRTPEEAARL 86
VAAL RD+ F T +VP+GL++HV S +AQ WY+KL+ +K + P+ +AA L
Sbjct: 190 GVAALERDLVDFTRTFEVPEGLAQHVTSPMQAQVTWYRKLLAAYKDIKYPPKESADAAVL 249
Query: 87 VVTTLKNHQKADVEGFLVFYGLPIPNXXXXXXXXXXXXVPKPQGCKFELHTLPVDAKAVA 146
V TL+ ++ ++EG L FYG PIP +PK G F L TLPV+AK +
Sbjct: 250 VAATLRGIERTNLEGILAFYGFPIPTISKEASENHPSSIPK--GVLFVLKTLPVNAKCIV 307
Query: 147 DGDTITVYIDTADPRESGNVPREIQKXXXXXXXXXXXXDYQKADGLQKMIADAGYRQVPN 206
DGD T Y+DT DP E + ++ + A LQ + + G +++
Sbjct: 308 DGDGFTAYVDTLDPIE---LRQDCNASCQSRNSKKQKLWDKTAADLQISLENTGQKKMFF 364
Query: 207 ARGEEVLAKKYRIRLRGIDAPESAMPYGKEAKEALLKMVQGKSLKVYVYDEDRYGRCVGD 266
G E+LA+KY IRLRGIDAPE M YGKE+++AL+K++ K + ++VY +D++ R V D
Sbjct: 365 G-GREILARKYEIRLRGIDAPEIGMQYGKESQDALVKLIARKCVTLHVYGQDQFKRFVCD 423
Query: 267 IYCDGVFVQEQMLKKGCAWHYTAYDQRPELAKWEKQAQSGRKGLWAASRPQKPWEWRRDK 326
I+C GVF+QEQML G AWH+ YD+RP+ AKWEK A+ R+GLWA +KPWEWR++K
Sbjct: 424 IHCGGVFIQEQMLVNGHAWHFKNYDKRPQFAKWEKMARDARQGLWAYDNLEKPWEWRKNK 483
Query: 327 RNGT 330
R +
Sbjct: 484 RKAS 487
>Os11g0109500 Staphylococcus nuclease (SNase-like) domain containing protein
Length = 311
Score = 235 bits (599), Expect = 4e-62, Method: Compositional matrix adjust.
Identities = 119/242 (49%), Positives = 157/242 (64%), Gaps = 6/242 (2%)
Query: 21 PHGAHPA---VAALGRDIQQFEATSQVPDGLSRHVVSSKKAQANWYKKLIVTWKKARPTP 77
PHG P+ VAAL D+ FE+TS VPDGLS+HVVSS+KAQ WY+KL+ +K P P
Sbjct: 52 PHGVTPSTVGVAALAHDLLNFESTSMVPDGLSQHVVSSRKAQVKWYQKLLEAYKNTTPPP 111
Query: 78 RTPEEAARLVVTTLKNHQKADVEGFLVFYGLPIPNXXXXXXXXXXXXVPKPQGCKFELHT 137
+TP AA+L+ L Q+AD+EG L FY LPIP+ + P+G +F L+T
Sbjct: 112 KTPANAAQLIARALNMIQRADLEGILEFYNLPIPSLPTASSNYQPSLL--PEGVQFVLNT 169
Query: 138 LPVDAKAVADGDTITVYIDTADPRESGNVPREIQKXXXXXXXXXXXXDYQKADGLQKMIA 197
LPV K + DGD T Y+ T DPRES NVP E+ + DYQ AD L +
Sbjct: 170 LPVYDKCIGDGDGFTAYVPTTDPRESANVPLEVHELVIARTQARKCRDYQSADALLSSLD 229
Query: 198 DAGYRQVPNARGEEVLAKKYRIRLRGIDAPESAMPYGKEAKEALLKMVQGKSLKVYVYDE 257
+AGY+ + + +EVLA+KYRIR+RGIDAPE MPYGKE++ AL+K++ GKS+K+YVYD
Sbjct: 230 EAGYKII-SCSDDEVLARKYRIRMRGIDAPELKMPYGKESRTALVKLIGGKSVKIYVYDL 288
Query: 258 DR 259
D+
Sbjct: 289 DQ 290
>Os12g0254100
Length = 64
Score = 76.3 bits (186), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 32/55 (58%), Positives = 41/55 (74%)
Query: 276 EQMLKKGCAWHYTAYDQRPELAKWEKQAQSGRKGLWAASRPQKPWEWRRDKRNGT 330
EQML G AWH+ YD+RP+ AKWEK A+ R+GLWA P+KPWEWR++KR +
Sbjct: 2 EQMLVTGHAWHFKNYDKRPQFAKWEKMARDARQGLWAYDNPEKPWEWRKNKRKAS 56
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.317 0.134 0.417
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 11,572,609
Number of extensions: 459879
Number of successful extensions: 966
Number of sequences better than 1.0e-10: 4
Number of HSP's gapped: 962
Number of HSP's successfully gapped: 4
Length of query: 331
Length of database: 17,035,801
Length adjustment: 101
Effective length of query: 230
Effective length of database: 11,762,187
Effective search space: 2705303010
Effective search space used: 2705303010
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 156 (64.7 bits)