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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os12g0255200

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Staphylococcus nuclease (SNase-like) domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 5.86 (0.0336) R2 : 0.641
β1 : -1.19 (0.129) R2dD : 0.0782 R2D : -0.0595
β2 : -- (--) R2dC : -- R2C : --
β3 : -4.16 (0.154) R2dE : 0.738 R2E : 0.564
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.164 (0.0779) R2dN8 : 0.00588 R2N8 : -0.0447
σ : 0.613
deviance : 172.96
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_____
C
peak time of C : --
E
wheather : temperature
threshold : 24.88
memory length : 1159
response mode : < th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 17.9
open length of G : 18.1

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
155.83 0.587 5.87 -1.47 1.67 -5.72 -1.48 2.9 -0.204 9.8 32.56 756 19 18.8
159.47 0.588 5.83 -1.09 1.71 -5.78 -0.314 -- -0.106 9.85 33.18 763 19 18.8
158.72 0.587 5.84 -1.27 1.65 -5.7 -- 1.17 -0.125 9.82 33.47 784 18.6 19
159.39 0.588 5.82 -1.08 1.69 -5.72 -- -- -0.0802 9.85 33.39 776 18.7 18.9
173.23 0.613 5.91 -1.47 -- -3.7 -- 0.779 -0.207 -- 28.12 2151 17.8 18.7
425.4 0.967 5.69 0.0791 0.48 -- 0.00616 -- 0.73 22 -- -- -- --
425.4 0.966 5.69 0.0788 0.48 -- -- -- 0.73 22 -- -- -- --
172.96 0.613 5.86 -1.19 -- -4.16 -- -- -0.164 -- 24.88 1159 17.9 18.1
186.63 0.636 5.78 -- 1.72 -5.34 -- -- 0.104 9.95 34.65 784 18.6 18.5
439.28 0.979 5.68 0.0847 -- -- -- -- 0.73 -- -- -- -- --
425.56 0.965 5.7 -- 0.481 -- -- -- 0.721 22 -- -- -- --
199.25 0.657 5.83 -- -- -3.36 -- -- 0.0276 -- 28.51 1224 16.2 17.6
439.47 0.978 5.68 -- -- -- -- -- 0.721 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 160.41 temperature 30 720 < th dose dependent rect. 19 19
9 163.25 temperature 15 720 > th dose dependent rect. 20 17
14 164.37 temperature 15 720 > th dose dependent rect. 18 17
19 164.93 temperature 15 1440 > th dose dependent rect. 18 15
20 164.97 temperature 30 1440 < th dose dependent rect. 18 15
48 165.70 temperature 15 1440 > th dose dependent sin 9 NA
72 166.17 temperature 30 1440 < th dose dependent sin 10 NA
106 166.67 temperature 10 1440 > th dose dependent rect. 1 8
111 166.82 temperature 30 1440 < th dose dependent rect. 1 8
120 166.97 temperature 10 1440 > th dose dependent rect. 3 5
134 167.18 temperature 30 1440 < th dose dependent rect. 3 5
268 169.29 temperature 10 1440 > th dose dependent rect. 5 2
302 169.79 temperature 30 1440 < th dose dependent rect. 5 2
358 170.34 temperature 15 720 > th dose dependent rect. 21 22
570 172.66 temperature 10 720 > th dose dependent rect. 12 23
730 174.12 temperature 25 1440 < th dose dependent rect. 22 2
825 175.25 temperature 30 720 < th dose dependent rect. 24 23
870 175.66 temperature 15 720 > th dose dependent no NA NA