BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os12g0255200 Os12g0255200|AK068445
(495 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os12g0255200 Staphylococcus nuclease (SNase-like) domain co... 929 0.0
Os01g0166100 Similar to Ca(2+)-dependent nuclease 265 7e-71
Os11g0109500 Staphylococcus nuclease (SNase-like) domain co... 221 1e-57
Os12g0254100 127 1e-29
>Os12g0255200 Staphylococcus nuclease (SNase-like) domain containing protein
Length = 495
Score = 929 bits (2400), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 451/495 (91%), Positives = 451/495 (91%)
Query: 1 MGNILKCFISCFXXXXXXXXSGHGRFPNSYPPVSSLHYQPLHLDDLQVXXXXXXXXXXXX 60
MGNILKCFISCF SGHGRFPNSYPPVSSLHYQPLHLDDLQV
Sbjct: 1 MGNILKCFISCFDGEDEDGGSGHGRFPNSYPPVSSLHYQPLHLDDLQVPLSPPPPSTRQQ 60
Query: 61 XXXXXXXXXXXHYQPLRLADLQVPLSPPPPSTXXXXXXXXXXXXXGYHHGVLWPTIEITP 120
HYQPLRLADLQVPLSPPPPST GYHHGVLWPTIEITP
Sbjct: 61 QPPPRPALSRLHYQPLRLADLQVPLSPPPPSTRQQQLPPRPARPLGYHHGVLWPTIEITP 120
Query: 121 CDDFLNLEFTTKVCEGPQHHSTPSRKTDLNRCIHEKDDGNSKPSYYWLTKNKDNHVVTPQ 180
CDDFLNLEFTTKVCEGPQHHSTPSRKTDLNRCIHEKDDGNSKPSYYWLTKNKDNHVVTPQ
Sbjct: 121 CDDFLNLEFTTKVCEGPQHHSTPSRKTDLNRCIHEKDDGNSKPSYYWLTKNKDNHVVTPQ 180
Query: 181 TKRSPRPPSGVAALERDLVDFTRTFEVPEGLAQHVTSPMQAQVTWYRKLLAAYKDIKYPP 240
TKRSPRPPSGVAALERDLVDFTRTFEVPEGLAQHVTSPMQAQVTWYRKLLAAYKDIKYPP
Sbjct: 181 TKRSPRPPSGVAALERDLVDFTRTFEVPEGLAQHVTSPMQAQVTWYRKLLAAYKDIKYPP 240
Query: 241 KESADAAVLVAATLRGIERTNLEGILAFYGFPIPTISKEASENHPSSIPKGVLFVLKTLP 300
KESADAAVLVAATLRGIERTNLEGILAFYGFPIPTISKEASENHPSSIPKGVLFVLKTLP
Sbjct: 241 KESADAAVLVAATLRGIERTNLEGILAFYGFPIPTISKEASENHPSSIPKGVLFVLKTLP 300
Query: 301 VNAKCIVDGDGFTAYVDTLDPIELRQDCNASCQSRNSKKQKLWDKTAADLQISLENTGQK 360
VNAKCIVDGDGFTAYVDTLDPIELRQDCNASCQSRNSKKQKLWDKTAADLQISLENTGQK
Sbjct: 301 VNAKCIVDGDGFTAYVDTLDPIELRQDCNASCQSRNSKKQKLWDKTAADLQISLENTGQK 360
Query: 361 KMFFGGREILARKYEIRLRGIDAPEIGMQYGKESQDALVKLIARKCVTLHVYGQDQFKRF 420
KMFFGGREILARKYEIRLRGIDAPEIGMQYGKESQDALVKLIARKCVTLHVYGQDQFKRF
Sbjct: 361 KMFFGGREILARKYEIRLRGIDAPEIGMQYGKESQDALVKLIARKCVTLHVYGQDQFKRF 420
Query: 421 VCDIHCGGVFIQEQMLVNGHAWHFKNYDKRPQFAKWEKMARDARQGLWAYDNLEKPWEWR 480
VCDIHCGGVFIQEQMLVNGHAWHFKNYDKRPQFAKWEKMARDARQGLWAYDNLEKPWEWR
Sbjct: 421 VCDIHCGGVFIQEQMLVNGHAWHFKNYDKRPQFAKWEKMARDARQGLWAYDNLEKPWEWR 480
Query: 481 KNKRKASRHHNSDVR 495
KNKRKASRHHNSDVR
Sbjct: 481 KNKRKASRHHNSDVR 495
>Os01g0166100 Similar to Ca(2+)-dependent nuclease
Length = 331
Score = 265 bits (676), Expect = 7e-71, Method: Compositional matrix adjust.
Identities = 133/304 (43%), Positives = 192/304 (63%), Gaps = 6/304 (1%)
Query: 190 GVAALERDLVDFTRTFEVPEGLAQHVTSPMQAQVTWYRKLLAAYKDIKYPPKESADAAVL 249
VAAL RD+ F T +VP+GL++HV S +AQ WY+KL+ +K + P+ +AA L
Sbjct: 27 AVAALGRDIQQFEATSQVPDGLSRHVVSSKKAQANWYKKLIVTWKKARPTPRTPEEAARL 86
Query: 250 VAATLRGIERTNLEGILAFYGFPIPTISKEASENHPSSIPK--GVLFVLKTLPVNAKCIV 307
V TL+ ++ ++EG L FYG PIP + H + +PK G F L TLPV+AK +
Sbjct: 87 VVTTLKNHQKADVEGFLVFYGLPIPNAAASTPAPHTAHVPKPQGCKFELHTLPVDAKAVA 146
Query: 308 DGDGFTAYVDTLDPIE---LRQDCNASCQSRNSKKQKLWDKTAADLQISLENTGQKKMFF 364
DGD T Y+DT DP E + ++ + R + + A LQ + + G +++
Sbjct: 147 DGDTITVYIDTADPRESGNVPREIQKAAAERTRARAARDYQKADGLQKMIADAGYRQVPN 206
Query: 365 G-GREILARKYEIRLRGIDAPEIGMQYGKESQDALVKLIARKCVTLHVYGQDQFKRFVCD 423
G E+LA+KY IRLRGIDAPE M YGKE+++AL+K++ K + ++VY +D++ R V D
Sbjct: 207 ARGEEVLAKKYRIRLRGIDAPESAMPYGKEAKEALLKMVQGKSLKVYVYDEDRYGRCVGD 266
Query: 424 IHCGGVFIQEQMLVNGHAWHFKNYDKRPQFAKWEKMARDARQGLWAYDNLEKPWEWRKNK 483
I+C GVF+QEQML G AWH+ YD+RP+ AKWEK A+ R+GLWA +KPWEWR++K
Sbjct: 267 IYCDGVFVQEQMLKKGCAWHYTAYDQRPELAKWEKQAQSGRKGLWAASRPQKPWEWRRDK 326
Query: 484 RKAS 487
R +
Sbjct: 327 RNGT 330
>Os11g0109500 Staphylococcus nuclease (SNase-like) domain containing protein
Length = 311
Score = 221 bits (562), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 128/251 (50%), Positives = 157/251 (62%), Gaps = 20/251 (7%)
Query: 175 HVVTPQTKRSPRPPSGVAALERDLVDFTRTFEVPEGLAQHVTSPMQAQVTWYRKLLAAYK 234
H VTP T GVAAL DL++F T VP+GL+QHV S +AQV WY+KLL AYK
Sbjct: 53 HGVTPST-------VGVAALAHDLLNFESTSMVPDGLSQHVVSSRKAQVKWYQKLLEAYK 105
Query: 235 DIKYPPKESADAAVLVAATLRGIERTNLEGILAFYGFPIPTISKEASENHPSSIPKGVLF 294
+ PPK A+AA L+A L I+R +LEGIL FY PIP++ +S PS +P+GV F
Sbjct: 106 NTTPPPKTPANAAQLIARALNMIQRADLEGILEFYNLPIPSLPTASSNYQPSLLPEGVQF 165
Query: 295 VLKTLPVNAKCIVDGDGFTAYVDTLD-------PIELRQDCNASCQSRNSKKQKLWDKTA 347
VL TLPV KCI DGDGFTAYV T D P+E+ + A Q+R K D +
Sbjct: 166 VLNTLPVYDKCIGDGDGFTAYVPTTDPRESANVPLEVHELVIARTQAR-----KCRDYQS 220
Query: 348 AD-LQISLENTGQKKMFFGGREILARKYEIRLRGIDAPEIGMQYGKESQDALVKLIARKC 406
AD L SL+ G K + E+LARKY IR+RGIDAPE+ M YGKES+ ALVKLI K
Sbjct: 221 ADALLSSLDEAGYKIISCSDDEVLARKYRIRMRGIDAPELKMPYGKESRTALVKLIGGKS 280
Query: 407 VTLHVYGQDQF 417
V ++VY DQ
Sbjct: 281 VKIYVYDLDQV 291
>Os12g0254100
Length = 64
Score = 127 bits (320), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 59/63 (93%), Positives = 59/63 (93%)
Query: 433 EQMLVNGHAWHFKNYDKRPQFAKWEKMARDARQGLWAYDNLEKPWEWRKNKRKASRHHNS 492
EQMLV GHAWHFKNYDKRPQFAKWEKMARDARQGLWAYDN EKPWEWRKNKRKAS HHNS
Sbjct: 2 EQMLVTGHAWHFKNYDKRPQFAKWEKMARDARQGLWAYDNPEKPWEWRKNKRKASEHHNS 61
Query: 493 DVR 495
VR
Sbjct: 62 GVR 64
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.320 0.136 0.431
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 17,418,514
Number of extensions: 720942
Number of successful extensions: 1722
Number of sequences better than 1.0e-10: 4
Number of HSP's gapped: 1716
Number of HSP's successfully gapped: 4
Length of query: 495
Length of database: 17,035,801
Length adjustment: 105
Effective length of query: 390
Effective length of database: 11,553,331
Effective search space: 4505799090
Effective search space used: 4505799090
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 158 (65.5 bits)