Os11g0109500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Staphylococcus nuclease (SNase-like) domain containing protein.
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Os11g0109500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Staphylococcus nuclease (SNase-like) domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 236.32 | 0.722 | 5.9 | -0.715 | 2.67 | 1.7 | -0.0675 | -0.7 | 0.233 | 22.9 | 20.5 | 1215 | -- | -- |
| 237.36 | 0.718 | 5.89 | -0.598 | 2.69 | 1.8 | -0.108 | -- | 0.25 | 22.9 | 20.5 | 1240 | -- | -- |
| 236.33 | 0.716 | 5.9 | -0.714 | 2.67 | 1.7 | -- | -0.708 | 0.233 | 22.9 | 20.5 | 1213 | -- | -- |
| 237.44 | 0.718 | 5.88 | -0.589 | 2.67 | 1.81 | -- | -- | 0.258 | 22.9 | 20.51 | 1237 | -- | -- |
| 625.62 | 1.16 | 5.87 | -0.817 | -- | 2.29 | -- | -0.584 | 0.0924 | -- | 20.8 | 849 | -- | -- |
| 314.99 | 0.832 | 5.79 | 0.146 | 2.78 | -- | -0.22 | -- | 0.668 | 23 | -- | -- | -- | -- |
| 315.2 | 0.831 | 5.79 | 0.155 | 2.79 | -- | -- | -- | 0.669 | 23 | -- | -- | -- | -- |
| 626.43 | 1.17 | 5.85 | -0.701 | -- | 2.35 | -- | -- | 0.116 | -- | 20.84 | 871 | -- | -- |
| 244.9 | 0.729 | 5.86 | -- | 2.67 | 1.55 | -- | -- | 0.353 | 22.9 | 20.68 | 1211 | -- | -- |
| 797.68 | 1.32 | 5.72 | 0.216 | -- | -- | -- | -- | 0.689 | -- | -- | -- | -- | -- |
| 315.83 | 0.831 | 5.8 | -- | 2.79 | -- | -- | -- | 0.652 | 23 | -- | -- | -- | -- |
| 637.66 | 1.18 | 5.82 | -- | -- | 2.14 | -- | -- | 0.236 | -- | 20.82 | 845 | -- | -- |
| 798.92 | 1.32 | 5.73 | -- | -- | -- | -- | -- | 0.665 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 227.73 | humidity | 80.0 | 14400 | > th | dose dependent | rect. | 13 | 1 |
| 2 | 228.15 | wind | 1.0 | 43200 | > th | dose independent | rect. | 4 | 3 |
| 4 | 230.43 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 5 | 11 |
| 5 | 230.43 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 5 | 11 |
| 6 | 230.63 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 5 | 11 |
| 19 | 232.55 | humidity | 80.0 | 14400 | > th | dose independent | rect. | 13 | 1 |
| 28 | 233.76 | wind | 1.0 | 43200 | > th | dose dependent | rect. | 5 | 1 |
| 31 | 234.08 | wind | 1.0 | 43200 | < th | dose dependent | rect. | 4 | 3 |
| 32 | 234.18 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 5 | 10 |
| 37 | 234.55 | wind | 9.0 | 43200 | < th | dose dependent | rect. | 5 | 1 |
| 57 | 236.85 | wind | 1.0 | 43200 | < th | dose independent | rect. | 4 | 3 |
| 59 | 237.72 | wind | 1.0 | 43200 | > th | dose dependent | rect. | 1 | 1 |
| 61 | 237.83 | humidity | 80.0 | 14400 | > th | dose dependent | rect. | 9 | 7 |
| 72 | 238.37 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 9 | 7 |
| 78 | 238.59 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 5 | 3 |
| 79 | 238.67 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 7 | 1 |
| 80 | 238.67 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 7 | 1 |
| 81 | 238.68 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 5 | 3 |
| 82 | 238.68 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 5 | 3 |
| 83 | 238.69 | temperature | 20.0 | 14400 | > th | dose dependent | rect. | 13 | 1 |
| 87 | 238.95 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 5 | 3 |
| 88 | 239.13 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 7 | 1 |
| 89 | 239.13 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 7 | 1 |
| 90 | 239.14 | humidity | 80.0 | 14400 | < th | dose independent | rect. | 13 | 1 |
| 92 | 239.25 | humidity | 80.0 | 14400 | > th | dose independent | rect. | 10 | 1 |
| 95 | 239.38 | humidity | 80.0 | 14400 | > th | dose independent | rect. | 10 | 6 |
| 115 | 240.51 | temperature | 20.0 | 14400 | > th | dose dependent | rect. | 8 | 7 |
| 130 | 240.95 | temperature | 20.0 | 720 | > th | dose independent | rect. | 16 | 21 |
| 136 | 241.03 | temperature | 20.0 | 720 | < th | dose independent | rect. | 2 | 22 |
| 140 | 241.09 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 5 | 5 |
| 144 | 241.26 | temperature | 15.0 | 14400 | > th | dose dependent | rect. | 8 | 1 |
| 145 | 241.29 | temperature | 20.0 | 720 | > th | dose independent | rect. | 14 | 23 |
| 159 | 241.52 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 7 | 1 |
| 162 | 241.59 | temperature | 30.0 | 14400 | < th | dose dependent | rect. | 13 | 1 |
| 167 | 241.69 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 5 | 5 |
| 169 | 241.69 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 5 | 5 |
| 170 | 241.75 | temperature | 20.0 | 1440 | > th | dose independent | rect. | 9 | 22 |
| 171 | 241.76 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 4 | 6 |
| 179 | 241.91 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 7 | 3 |
| 185 | 241.97 | humidity | 80.0 | 14400 | < th | dose independent | rect. | 10 | 5 |
| 189 | 242.02 | temperature | 30.0 | 14400 | < th | dose dependent | rect. | 8 | 1 |
| 201 | 242.11 | temperature | 20.0 | 720 | > th | dose independent | rect. | 23 | 23 |
| 223 | 242.24 | humidity | 80.0 | 14400 | < th | dose independent | rect. | 10 | 1 |
| 227 | 242.30 | temperature | 20.0 | 1440 | > th | dose independent | rect. | 21 | 22 |
| 229 | 242.31 | temperature | 20.0 | 1440 | < th | dose independent | rect. | 9 | 21 |
| 238 | 242.39 | temperature | 20.0 | 1440 | > th | dose independent | rect. | 21 | 18 |
| 309 | 242.80 | humidity | 80.0 | 14400 | > th | dose dependent | rect. | 9 | 2 |
| 315 | 242.82 | temperature | 20.0 | 1440 | < th | dose independent | rect. | 21 | 18 |
| 326 | 242.88 | temperature | 20.0 | 1440 | < th | dose independent | rect. | 18 | 20 |
| 335 | 242.90 | temperature | 20.0 | 1440 | < th | dose independent | rect. | 21 | 22 |
| 338 | 242.91 | temperature | 30.0 | 14400 | < th | dose dependent | rect. | 8 | 6 |
| 347 | 242.97 | temperature | 20.0 | 720 | < th | dose independent | rect. | 12 | 22 |
| 361 | 243.04 | temperature | 20.0 | 1440 | > th | dose independent | no | NA | NA |
| 387 | 243.12 | temperature | 20.0 | 1440 | > th | dose independent | rect. | 15 | 15 |
| 391 | 243.13 | temperature | 20.0 | 1440 | < th | dose independent | rect. | 23 | 15 |
| 549 | 243.65 | temperature | 20.0 | 720 | < th | dose independent | no | NA | NA |
| 557 | 243.68 | temperature | 20.0 | 1440 | < th | dose independent | rect. | 15 | 15 |
| 593 | 243.77 | wind | 9.0 | 43200 | < th | dose dependent | rect. | 1 | 1 |
| 597 | 243.80 | wind | 1.0 | 14400 | > th | dose dependent | rect. | 23 | 3 |
| 602 | 243.82 | temperature | 20.0 | 1440 | > th | dose independent | sin | 14 | NA |
| 637 | 243.90 | wind | 9.0 | 43200 | < th | dose dependent | rect. | 23 | 7 |
| 657 | 244.00 | temperature | 20.0 | 1440 | > th | dose independent | sin | 6 | NA |
| 701 | 244.14 | temperature | 20.0 | 1440 | < th | dose independent | sin | 6 | NA |
| 730 | 244.23 | wind | 1.0 | 43200 | < th | dose dependent | rect. | 2 | 6 |
| 759 | 244.34 | wind | 1.0 | 43200 | > th | dose dependent | rect. | 23 | 7 |
| 772 | 244.40 | wind | 1.0 | 43200 | > th | dose independent | rect. | 2 | 6 |
| 797 | 244.53 | temperature | 20.0 | 1440 | < th | dose independent | sin | 13 | NA |
| 857 | 244.74 | temperature | 20.0 | 14400 | > th | dose dependent | sin | 0 | NA |