Os12g0109200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Ca(2+)-dependent nuclease.
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Os12g0109200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Ca(2+)-dependent nuclease.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 235.18 | 0.721 | 5.29 | -2.06 | 2.17 | 1.01 | 0.6 | -2.38 | -0.0808 | 24 | 20.5 | 916 | -- | -- |
| 246.95 | 0.732 | 5.22 | -1.71 | 2.23 | 1.37 | -0.0495 | -- | -0.0101 | 23.9 | 20.57 | 1216 | -- | -- |
| 234.8 | 0.714 | 5.29 | -2.12 | 2.22 | 1.07 | -- | -2.29 | -0.0939 | 23.9 | 20.5 | 1195 | -- | -- |
| 246.93 | 0.732 | 5.23 | -1.71 | 2.22 | 1.39 | -- | -- | -0.0161 | 23.9 | 20.58 | 1216 | -- | -- |
| 518.56 | 1.06 | 5.26 | -2.16 | -- | 1.76 | -- | -1.79 | -0.18 | -- | 20.5 | 905 | -- | -- |
| 293.2 | 0.803 | 5.16 | -1.15 | 2.32 | -- | -0.132 | -- | 0.3 | 24 | -- | -- | -- | -- |
| 293.27 | 0.802 | 5.16 | -1.14 | 2.32 | -- | -- | -- | 0.3 | 24 | -- | -- | -- | -- |
| 522.01 | 1.06 | 5.21 | -1.94 | -- | 2.26 | -- | -- | -0.094 | -- | 19.67 | 912 | -- | -- |
| 311.99 | 0.827 | 5.15 | -- | 2.44 | 0.59 | -- | -- | 0.33 | 0.00149 | 20.58 | 1216 | -- | -- |
| 633.31 | 1.18 | 5.11 | -1.07 | -- | -- | -- | -- | 0.332 | -- | -- | -- | -- | -- |
| 327.53 | 0.847 | 5.13 | -- | 2.31 | -- | -- | -- | 0.427 | 23.9 | -- | -- | -- | -- |
| 603.79 | 1.14 | 5.13 | -- | -- | 1.35 | -- | -- | 0.247 | -- | 20.33 | 875 | -- | -- |
| 663.42 | 1.2 | 5.08 | -- | -- | -- | -- | -- | 0.451 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 219.14 | humidity | 90.0 | 14400 | < th | dose independent | rect. | 12 | 2 |
| 3 | 220.67 | wind | 9.0 | 43200 | < th | dose dependent | rect. | 4 | 2 |
| 4 | 220.77 | wind | 9.0 | 43200 | < th | dose dependent | rect. | 1 | 5 |
| 5 | 220.78 | wind | 1.0 | 43200 | > th | dose dependent | rect. | 4 | 2 |
| 6 | 220.89 | wind | 1.0 | 43200 | > th | dose dependent | rect. | 1 | 5 |
| 21 | 222.61 | humidity | 90.0 | 14400 | > th | dose independent | rect. | 13 | 1 |
| 34 | 223.27 | wind | 3.0 | 43200 | > th | dose dependent | rect. | 4 | 5 |
| 40 | 223.45 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 7 | 1 |
| 41 | 223.45 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 7 | 1 |
| 44 | 223.60 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 7 | 1 |
| 48 | 223.69 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 7 | 1 |
| 49 | 223.72 | wind | 3.0 | 43200 | > th | dose dependent | rect. | 1 | 8 |
| 54 | 223.91 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 6 | 9 |
| 55 | 223.91 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 6 | 9 |
| 57 | 224.03 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 6 | 9 |
| 91 | 224.63 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 5 | 4 |
| 99 | 224.76 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 5 | 4 |
| 109 | 224.90 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 5 | 4 |
| 110 | 224.90 | humidity | 80.0 | 43200 | > th | dose dependent | rect. | 11 | 3 |
| 111 | 224.90 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 5 | 4 |
| 143 | 225.49 | wind | 9.0 | 43200 | < th | dose independent | rect. | 10 | 1 |
| 152 | 225.67 | wind | 9.0 | 43200 | > th | dose independent | rect. | 10 | 1 |
| 162 | 225.79 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 9 | 6 |
| 177 | 225.98 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 9 | 6 |
| 179 | 225.98 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 9 | 6 |
| 191 | 226.13 | humidity | 90.0 | 43200 | > th | dose independent | rect. | 9 | 5 |
| 211 | 226.36 | temperature | 25.0 | 43200 | < th | dose dependent | rect. | 9 | 1 |
| 231 | 226.58 | wind | 9.0 | 43200 | < th | dose independent | rect. | 9 | 4 |
| 239 | 226.63 | wind | 5.0 | 43200 | > th | dose dependent | rect. | 7 | 5 |
| 242 | 226.65 | temperature | 20.0 | 43200 | < th | dose independent | rect. | 19 | 1 |
| 243 | 226.67 | wind | 5.0 | 43200 | < th | dose independent | rect. | 3 | 7 |
| 261 | 226.84 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 13 | 21 |
| 262 | 226.85 | wind | 5.0 | 43200 | > th | dose independent | rect. | 3 | 7 |
| 264 | 226.85 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 24 | 21 |
| 266 | 226.86 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 15 | 19 |
| 283 | 227.04 | wind | 5.0 | 43200 | > th | dose dependent | rect. | 10 | 1 |
| 309 | 227.17 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 16 | 22 |
| 354 | 227.33 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 18 | 23 |
| 396 | 227.51 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 7 | 23 |
| 403 | 227.53 | humidity | 90.0 | 14400 | > th | dose dependent | no | NA | NA |
| 412 | 227.58 | wind | 5.0 | 43200 | > th | dose independent | rect. | 1 | 12 |
| 450 | 227.69 | wind | 9.0 | 43200 | < th | dose independent | rect. | 21 | 16 |
| 456 | 227.73 | wind | 3.0 | 43200 | > th | dose dependent | sin | 7 | NA |
| 480 | 227.86 | wind | 7.0 | 43200 | > th | dose independent | rect. | 23 | 14 |
| 487 | 227.89 | wind | 9.0 | 43200 | < th | dose independent | rect. | 1 | 12 |
| 517 | 228.01 | humidity | 90.0 | 43200 | < th | dose independent | rect. | 9 | 5 |
| 520 | 228.02 | temperature | 20.0 | 43200 | > th | dose independent | rect. | 18 | 2 |
| 550 | 228.10 | radiation | 1.0 | 14400 | > th | dose independent | rect. | 7 | 1 |
| 581 | 228.21 | radiation | 1.0 | 14400 | < th | dose independent | rect. | 7 | 1 |
| 590 | 228.24 | humidity | 90.0 | 14400 | > th | dose dependent | sin | 4 | NA |
| 596 | 228.25 | temperature | 25.0 | 43200 | < th | dose dependent | rect. | 16 | 1 |
| 600 | 228.26 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 3 | 23 |
| 635 | 228.35 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 3 | 7 |
| 652 | 228.40 | humidity | 90.0 | 14400 | > th | dose independent | rect. | 17 | 11 |
| 664 | 228.44 | wind | 3.0 | 43200 | > th | dose independent | rect. | 4 | 2 |
| 674 | 228.46 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 12 | 16 |
| 681 | 228.49 | temperature | 10.0 | 14400 | > th | dose dependent | rect. | 13 | 1 |
| 728 | 228.66 | humidity | 90.0 | 14400 | > th | dose dependent | sin | 14 | NA |
| 733 | 228.67 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 6 | 9 |
| 806 | 228.94 | humidity | 90.0 | 14400 | > th | dose independent | rect. | 18 | 16 |
| 832 | 229.01 | wind | 3.0 | 43200 | < th | dose independent | rect. | 4 | 2 |
| 952 | 229.31 | wind | 9.0 | 43200 | > th | dose independent | rect. | 9 | 4 |
| 956 | 229.33 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 16 | 11 |
| 981 | 229.38 | temperature | 10.0 | 14400 | > th | dose dependent | rect. | 5 | 10 |
| 991 | 229.40 | wind | 9.0 | 43200 | < th | dose independent | rect. | 19 | 18 |