BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os10g0564400 Os10g0564400|AK109667
(508 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os10g0564400 Similar to Phospho-2-dehydro-3-deoxyheptonate ... 1014 0.0
Os08g0484500 Similar to Phospho-2-dehydro-3-deoxyheptonate ... 738 0.0
Os03g0389700 Similar to M-160-u1_1 (Fragment) 726 0.0
Os07g0622200 Similar to M-160-u1_1 (Fragment) 720 0.0
Os03g0790100 79 1e-14
Os08g0362600 79 1e-14
Os07g0648500 78 1e-14
>Os10g0564400 Similar to Phospho-2-dehydro-3-deoxyheptonate aldolase 2,
chloroplast precursor (EC 2.5.1.54)
(Phospho-2-keto-3-deoxyheptonate aldolase 2) (DAHP
synthetase 2) (3-deoxy-D-arabino-heptulosonate
7-phosphate synthase 2)
Length = 508
Score = 1014 bits (2623), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 490/508 (96%), Positives = 490/508 (96%)
Query: 1 MTCHSAMAALTVGHAAIVHATTRLEDARSTGXXXXXXGMITVRAAAAATSGWEPGSWRAR 60
MTCHSAMAALTVGHAAIVHATTRLEDARSTG GMITVRAAAAATSGWEPGSWRAR
Sbjct: 1 MTCHSAMAALTVGHAAIVHATTRLEDARSTGRRRRRRGMITVRAAAAATSGWEPGSWRAR 60
Query: 61 PARQIPEYPDXXXXXXXXXXXXSFPPLVFAGEARKLEERLGDAAMGRAFLLQGGDCAESF 120
PARQIPEYPD SFPPLVFAGEARKLEERLGDAAMGRAFLLQGGDCAESF
Sbjct: 61 PARQIPEYPDAAALEGAERELASFPPLVFAGEARKLEERLGDAAMGRAFLLQGGDCAESF 120
Query: 121 KEFAANNIRDTFRLMLQMAVVLTFGGQMPTIKVGRMAGQFAKPRSNPTETIDGVTLPSYR 180
KEFAANNIRDTFRLMLQMAVVLTFGGQMPTIKVGRMAGQFAKPRSNPTETIDGVTLPSYR
Sbjct: 121 KEFAANNIRDTFRLMLQMAVVLTFGGQMPTIKVGRMAGQFAKPRSNPTETIDGVTLPSYR 180
Query: 181 GDIINSDGFDEKSRAPDPERLIRAYSQSASTLNLLRGFAHGGYADLQRVTQWNLDFLRDS 240
GDIINSDGFDEKSRAPDPERLIRAYSQSASTLNLLRGFAHGGYADLQRVTQWNLDFLRDS
Sbjct: 181 GDIINSDGFDEKSRAPDPERLIRAYSQSASTLNLLRGFAHGGYADLQRVTQWNLDFLRDS 240
Query: 241 TQGDRYMELSERVHDAIGFMVAAGLTPQHPIMTTAEFWTSHECLHLPYEQALTRVDSISG 300
TQGDRYMELSERVHDAIGFMVAAGLTPQHPIMTTAEFWTSHECLHLPYEQALTRVDSISG
Sbjct: 241 TQGDRYMELSERVHDAIGFMVAAGLTPQHPIMTTAEFWTSHECLHLPYEQALTRVDSISG 300
Query: 301 LYYDCSAHMLWVGERTRQLDGAHVEFLRGISNPLGVKVSDKLEPSELVKLCEILNPHNKP 360
LYYDCSAHMLWVGERTRQLDGAHVEFLRGISNPLGVKVSDKLEPSELVKLCEILNPHNKP
Sbjct: 301 LYYDCSAHMLWVGERTRQLDGAHVEFLRGISNPLGVKVSDKLEPSELVKLCEILNPHNKP 360
Query: 361 GRLTIITRMGAENTRVKLPHMIRAVRQAGLIVTWVSDPMHGNTISAPCGLKTRSFDAIRC 420
GRLTIITRMGAENTRVKLPHMIRAVRQAGLIVTWVSDPMHGNTISAPCGLKTRSFDAIRC
Sbjct: 361 GRLTIITRMGAENTRVKLPHMIRAVRQAGLIVTWVSDPMHGNTISAPCGLKTRSFDAIRC 420
Query: 421 ELRAFFDVHEQEGSYPGGIHLEMTGQNVTECIGGSKTVTLDDLSSRYRTHCDPRLNASQS 480
ELRAFFDVHEQEGSYPGGIHLEMTGQNVTECIGGSKTVTLDDLSSRYRTHCDPRLNASQS
Sbjct: 421 ELRAFFDVHEQEGSYPGGIHLEMTGQNVTECIGGSKTVTLDDLSSRYRTHCDPRLNASQS 480
Query: 481 LELAFAIADRLRKKRDRAWNRLVYRAVA 508
LELAFAIADRLRKKRDRAWNRLVYRAVA
Sbjct: 481 LELAFAIADRLRKKRDRAWNRLVYRAVA 508
>Os08g0484500 Similar to Phospho-2-dehydro-3-deoxyheptonate aldolase 1,
chloroplast precursor (EC 2.5.1.54)
(Phospho-2-keto-3-deoxyheptonate aldolase 1) (DAHP
synthetase 1) (3-deoxy-D-arabino-heptulosonate
7-phosphate synthase 1)
Length = 505
Score = 738 bits (1904), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 351/451 (77%), Positives = 382/451 (84%)
Query: 50 SGWEPGSWRARPARQIPEYPDXXXXXXXXXXXXSFPPLVFAGEARKLEERLGDAAMGRAF 109
S W GSWR+ A Q PEYPD +FPP+VFAGEARKLEERL +AA+GRAF
Sbjct: 40 SKWSLGSWRSLTALQQPEYPDKAELDEVLRTVEAFPPIVFAGEARKLEERLAEAAVGRAF 99
Query: 110 LLQGGDCAESFKEFAANNIRDTFRLMLQMAVVLTFGGQMPTIKVGRMAGQFAKPRSNPTE 169
LLQGGDCAESFKEF ANNIRDTFR++LQM+VVL FGGQMP IKVGRMAGQFAKPRS+ E
Sbjct: 100 LLQGGDCAESFKEFNANNIRDTFRVLLQMSVVLMFGGQMPIIKVGRMAGQFAKPRSDGFE 159
Query: 170 TIDGVTLPSYRGDIINSDGFDEKSRAPDPERLIRAYSQSASTLNLLRGFAHGGYADLQRV 229
DGV LPSYRGD IN D FDEKSR PDP R+IRAYSQSA+TLNLLR FA GGYA +QRV
Sbjct: 160 ERDGVKLPSYRGDNINGDSFDEKSRLPDPHRMIRAYSQSAATLNLLRAFATGGYAAMQRV 219
Query: 230 TQWNLDFLRDSTQGDRYMELSERVHDAIGFMVAAGLTPQHPIMTTAEFWTSHECLHLPYE 289
TQWNLDF S QGDRYMEL+ RV +A+GFM AAGLT HPIMTT EFWTSHECL LPYE
Sbjct: 220 TQWNLDFTEHSEQGDRYMELAHRVDEALGFMAAAGLTMDHPIMTTTEFWTSHECLLLPYE 279
Query: 290 QALTRVDSISGLYYDCSAHMLWVGERTRQLDGAHVEFLRGISNPLGVKVSDKLEPSELVK 349
QALTR DS SGLYYDCSAH LWVGERTRQLD AHVEFLRGI+NPLG+KVSDK++P ELVK
Sbjct: 280 QALTREDSTSGLYYDCSAHFLWVGERTRQLDCAHVEFLRGIANPLGIKVSDKMDPKELVK 339
Query: 350 LCEILNPHNKPGRLTIITRMGAENTRVKLPHMIRAVRQAGLIVTWVSDPMHGNTISAPCG 409
L +ILNP NKPGR+TIITRMG EN RVKLPH+IRAVR AG IVTWV+DPMHGNT+ APCG
Sbjct: 340 LIDILNPQNKPGRITIITRMGPENMRVKLPHLIRAVRGAGQIVTWVTDPMHGNTMKAPCG 399
Query: 410 LKTRSFDAIRCELRAFFDVHEQEGSYPGGIHLEMTGQNVTECIGGSKTVTLDDLSSRYRT 469
LKTRSFD I E+RAFFDVHEQEGS+PGG+HLEMTGQNVTECIGGS+TVT DDL SRY T
Sbjct: 400 LKTRSFDRILAEVRAFFDVHEQEGSHPGGVHLEMTGQNVTECIGGSRTVTFDDLGSRYHT 459
Query: 470 HCDPRLNASQSLELAFAIADRLRKKRDRAWN 500
HCDPRLNASQSLELAF IA+RLRK+R +W
Sbjct: 460 HCDPRLNASQSLELAFIIAERLRKRRIASWQ 490
>Os03g0389700 Similar to M-160-u1_1 (Fragment)
Length = 554
Score = 726 bits (1873), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 337/451 (74%), Positives = 382/451 (84%), Gaps = 1/451 (0%)
Query: 48 ATSGWEPGSWRARPARQIPEYPDXXXXXXXXXXXXSFPPLVFAGEARKLEERLGDAAMGR 107
A + W SWR + A Q+PEYP+ +FPP+VFAGEAR LEERL DAAMGR
Sbjct: 91 APARWAVDSWRTKKALQLPEYPNAAELEAVLKTIEAFPPIVFAGEARHLEERLADAAMGR 150
Query: 108 AFLLQGGDCAESFKEFAANNIRDTFRLMLQMAVVLTFGGQMPTIKVGRMAGQFAKPRSNP 167
AFLLQGGDCAESFKEF NNIRDTFR++LQM+ VLTFGGQMP IKVGRMAGQFAKPRS
Sbjct: 151 AFLLQGGDCAESFKEFNGNNIRDTFRVLLQMSAVLTFGGQMPVIKVGRMAGQFAKPRSEA 210
Query: 168 TETIDGVTLPSYRGDIINSDGFDEKSRAPDPERLIRAYSQSASTLNLLRGFAHGGYADLQ 227
E DGV LPSYRGD IN D F+EKSR PDP+R++RAY+QSA+TLNLLR FA GGYA +Q
Sbjct: 211 FEERDGVKLPSYRGDNINGDAFNEKSRIPDPQRMVRAYAQSAATLNLLRAFATGGYAAMQ 270
Query: 228 RVTQWNLDFLRDSTQGDRYMELSERVHDAIGFMVAAGLTPQHPIMTTAEFWTSHECLHLP 287
RVTQWNLDF + S QGDRY EL+ RV +A+GFM AAGLT HP+MT+ +FWTSHECL LP
Sbjct: 271 RVTQWNLDFTQHSEQGDRYRELAHRVDEALGFMSAAGLTVDHPLMTSTDFWTSHECLLLP 330
Query: 288 YEQALTRVDSISGLYYDCSAHMLWVGERTRQLDGAHVEFLRGISNPLGVKVSDKLEPSEL 347
YEQ+LTR DS +G +YDCSAHMLWVGERTRQLDGAHVEFLRG++NPLG+KVSDK+ P+EL
Sbjct: 331 YEQSLTRQDSTTGHFYDCSAHMLWVGERTRQLDGAHVEFLRGVANPLGIKVSDKMNPTEL 390
Query: 348 VKLCEILNPHNKPGRLTIITRMGAENTRVKLPHMIRAVRQAGLIVTWVSDPMHGNTISAP 407
VKL EILNP NKPGR+TIITRMGAEN RVKLPH+IRAVR AG IVTW++DPMHGNTI AP
Sbjct: 391 VKLIEILNPSNKPGRITIITRMGAENMRVKLPHLIRAVRHAGQIVTWITDPMHGNTIKAP 450
Query: 408 CGLKTRSFDAIRCELRAFFDVHEQEGSYPGGIHLEMTGQNVTECIGGSKTVTLDDLSSRY 467
CGLKTR FD+I E+RAFFDVH+QEGS+PGG+HLEMTGQNVTECIGGS+TVT DDL RY
Sbjct: 451 CGLKTRPFDSI-AEVRAFFDVHDQEGSHPGGVHLEMTGQNVTECIGGSRTVTFDDLGDRY 509
Query: 468 RTHCDPRLNASQSLELAFAIADRLRKKRDRA 498
THCDPRLNASQSLEL+F IA+RLR+KR R+
Sbjct: 510 HTHCDPRLNASQSLELSFIIAERLRRKRIRS 540
>Os07g0622200 Similar to M-160-u1_1 (Fragment)
Length = 537
Score = 720 bits (1858), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 334/438 (76%), Positives = 372/438 (84%)
Query: 52 WEPGSWRARPARQIPEYPDXXXXXXXXXXXXSFPPLVFAGEARKLEERLGDAAMGRAFLL 111
W SW+A+ A Q+PEYP +FPP+VFAGEAR LEERL DAAMGRAF+L
Sbjct: 78 WTVDSWKAKKALQLPEYPSQEELDSVLKTIETFPPVVFAGEARHLEERLADAAMGRAFVL 137
Query: 112 QGGDCAESFKEFAANNIRDTFRLMLQMAVVLTFGGQMPTIKVGRMAGQFAKPRSNPTETI 171
QGGDCAESFKEF ANNIRDTFR++LQM VL FGGQMP +KVGRMAGQFAKPRS+ E
Sbjct: 138 QGGDCAESFKEFNANNIRDTFRILLQMGAVLMFGGQMPVVKVGRMAGQFAKPRSDSFEER 197
Query: 172 DGVTLPSYRGDIINSDGFDEKSRAPDPERLIRAYSQSASTLNLLRGFAHGGYADLQRVTQ 231
DGV LPSYRGD IN D FDEKSR PDP+R+IRAY+QS +TLNLLR FA GGYA +QRVTQ
Sbjct: 198 DGVKLPSYRGDNINGDTFDEKSRVPDPQRMIRAYAQSVATLNLLRAFATGGYAAMQRVTQ 257
Query: 232 WNLDFLRDSTQGDRYMELSERVHDAIGFMVAAGLTPQHPIMTTAEFWTSHECLHLPYEQA 291
WNLDF+ S QGDRY EL+ RV +A+GFM AAGLT HPIMTT +FWTSHECL LPYEQ+
Sbjct: 258 WNLDFMDHSEQGDRYRELAHRVDEALGFMTAAGLTVDHPIMTTTDFWTSHECLLLPYEQS 317
Query: 292 LTRVDSISGLYYDCSAHMLWVGERTRQLDGAHVEFLRGISNPLGVKVSDKLEPSELVKLC 351
LTR DS SGL+YDCSAHMLWVGERTRQLDGAHVEFLRG++NPLG+KVSDK+ P +LVKL
Sbjct: 318 LTREDSTSGLFYDCSAHMLWVGERTRQLDGAHVEFLRGVANPLGIKVSDKMNPRDLVKLI 377
Query: 352 EILNPHNKPGRLTIITRMGAENTRVKLPHMIRAVRQAGLIVTWVSDPMHGNTISAPCGLK 411
EILNP NKPGR+TIITRMGAEN RVKLPH+IRAVR +G IVTW++DPMHGNTI APCGLK
Sbjct: 378 EILNPSNKPGRITIITRMGAENMRVKLPHLIRAVRNSGQIVTWITDPMHGNTIKAPCGLK 437
Query: 412 TRSFDAIRCELRAFFDVHEQEGSYPGGIHLEMTGQNVTECIGGSKTVTLDDLSSRYRTHC 471
TR FD+I E+RAFFDVH+QEGS+PGGIHLEMTGQNVTECIGGS+TVT DDLS RY THC
Sbjct: 438 TRPFDSILAEVRAFFDVHDQEGSHPGGIHLEMTGQNVTECIGGSRTVTFDDLSDRYHTHC 497
Query: 472 DPRLNASQSLELAFAIAD 489
DPRLNASQSLELAF IA+
Sbjct: 498 DPRLNASQSLELAFIIAE 515
>Os03g0790100
Length = 229
Score = 78.6 bits (192), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 35/44 (79%), Positives = 38/44 (86%)
Query: 372 ENTRVKLPHMIRAVRQAGLIVTWVSDPMHGNTISAPCGLKTRSF 415
EN RVKLPH+IRAV A IVTWV+DPMHGNT+ APCGLKTRSF
Sbjct: 94 ENIRVKLPHLIRAVHVAVQIVTWVTDPMHGNTMKAPCGLKTRSF 137
>Os08g0362600
Length = 306
Score = 78.6 bits (192), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 35/44 (79%), Positives = 38/44 (86%)
Query: 372 ENTRVKLPHMIRAVRQAGLIVTWVSDPMHGNTISAPCGLKTRSF 415
EN RVKLPH+IRAV A IVTWV+DPMHGNT+ APCGLKTRSF
Sbjct: 250 ENIRVKLPHLIRAVHVAVQIVTWVTDPMHGNTMKAPCGLKTRSF 293
>Os07g0648500
Length = 213
Score = 78.2 bits (191), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 35/44 (79%), Positives = 38/44 (86%)
Query: 372 ENTRVKLPHMIRAVRQAGLIVTWVSDPMHGNTISAPCGLKTRSF 415
EN RVKLPH+IRAV A IVTWV+DPMHGNT+ APCGLKTRSF
Sbjct: 109 ENIRVKLPHLIRAVHVAVQIVTWVTDPMHGNTMKAPCGLKTRSF 152
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.321 0.135 0.410
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 17,096,769
Number of extensions: 696202
Number of successful extensions: 1343
Number of sequences better than 1.0e-10: 7
Number of HSP's gapped: 1342
Number of HSP's successfully gapped: 7
Length of query: 508
Length of database: 17,035,801
Length adjustment: 105
Effective length of query: 403
Effective length of database: 11,553,331
Effective search space: 4655992393
Effective search space used: 4655992393
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 158 (65.5 bits)