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Os07g0622200

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to M-160-u1_1 (Fragment).


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 12.6 (0.0361) R2 : 0.677
β1 : -3.77 (0.133) R2dD : 0.598 R2D : 0.514
β2 : 0.701 (0.0877) R2dC : 0.0492 R2C : 0.018
β3 : 1.67 (0.121) R2dE : 0.146 R2E : 0.0365
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.147 (0.077) R2dN8 : 0.00371 R2N8 : -0.0113
σ : 0.675
deviance : 210.08
__
_____
C
peak time of C : 11.5
E
wheather : temperature
threshold : 25.7
memory length : 646
response mode : > th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 20
open length of G : 2.92

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
209.99 0.681 12.6 -3.6 0.728 1.51 -0.262 1.3 -0.187 11.7 25.41 655 20.1 2.68
209.94 0.675 12.6 -3.73 0.721 1.63 -0.203 -- -0.158 11.5 25.62 640 20 2.92
210.15 0.675 12.6 -3.58 0.718 1.48 -- 1.61 -0.174 11.6 25.48 642 20.1 2.73
210.08 0.675 12.6 -3.77 0.701 1.67 -- -- -0.147 11.5 25.7 646 20 2.92
236.14 0.716 12.6 -3.6 -- 1.3 -- 2.84 -0.0845 -- 25.78 529 22 0.518
281.44 0.786 12.6 -3.57 0.748 -- 0.216 -- -0.171 8.01 -- -- -- --
281.56 0.786 12.6 -3.56 0.747 -- -- -- -0.171 8.09 -- -- -- --
234.21 0.713 12.6 -3.74 -- 1.77 -- -- -0.104 -- 25.82 572 22.1 0.417
578.37 1.12 12.5 -- 0.653 1.3 -- -- 0.231 11.2 25.67 568 21.9 0.773
312.18 0.826 12.6 -3.56 -- -- -- -- -0.162 -- -- -- -- --
616.32 1.16 12.5 -- 0.729 -- -- -- 0.226 8.44 -- -- -- --
600.51 1.14 12.5 -- -- 1.26 -- -- 0.236 -- 25.86 548 22.2 0.0166
645.98 1.19 12.5 -- -- -- -- -- 0.233 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 216.44 temperature 25.0 720 > th dose dependent rect. 20 1
2 216.47 temperature 30.0 720 > th dose dependent rect. 18 1
19 217.53 humidity 90.0 720 < th dose dependent rect. 18 5
21 218.20 humidity 90.0 720 < th dose dependent rect. 19 2
45 220.60 wind 1.0 90 < th dose independent rect. 4 1
69 222.42 wind 1.0 90 < th dose dependent rect. 4 1
85 225.17 humidity 80.0 720 < th dose independent rect. 18 4
86 225.23 wind 3.0 30 < th dose dependent rect. 2 5
88 225.42 humidity 50.0 1440 < th dose independent rect. 16 1
90 225.50 humidity 70.0 720 < th dose independent rect. 18 2
101 225.55 wind 3.0 10 < th dose dependent rect. 3 3
110 226.04 humidity 50.0 1440 < th dose dependent rect. 16 1
112 226.07 humidity 90.0 90 > th dose dependent rect. 4 1
124 226.80 humidity 70.0 720 > th dose independent rect. 15 11
131 227.10 humidity 70.0 720 > th dose independent rect. 18 8
133 227.41 wind 5.0 90 < th dose independent rect. 6 21
142 227.89 radiation 40.0 1440 < th dose dependent rect. 18 9
185 229.54 humidity 90.0 90 > th dose independent rect. 4 1
191 230.05 temperature 20.0 10 > th dose dependent rect. 4 2
192 230.11 temperature 20.0 90 > th dose dependent rect. 3 3
195 230.28 humidity 50.0 1440 > th dose independent rect. 16 1
196 230.33 humidity 90.0 10 > th dose independent rect. 4 2
200 230.40 temperature 20.0 90 > th dose dependent rect. 4 1
202 230.49 humidity 70.0 720 < th dose dependent rect. 19 12
215 230.59 humidity 50.0 720 > th dose dependent rect. 17 8
237 231.23 wind 1.0 90 < th dose dependent rect. 4 7
240 231.39 wind 1.0 30 < th dose independent rect. 2 8
241 231.40 temperature 25.0 90 < th dose independent rect. 4 1
244 231.40 wind 1.0 90 < th dose dependent rect. 4 9
261 231.90 wind 1.0 90 < th dose dependent rect. 4 11
263 231.94 temperature 30.0 720 > th dose independent rect. 18 1
277 231.95 humidity 70.0 720 > th dose independent sin 12 NA
278 231.97 wind 1.0 90 < th dose dependent rect. 4 14
281 231.97 wind 9.0 90 < th dose dependent rect. 6 21
284 232.04 temperature 20.0 10 > th dose dependent rect. 2 4
287 232.09 humidity 70.0 720 > th dose independent rect. 15 18
300 232.54 humidity 70.0 720 > th dose independent rect. 15 5
304 232.56 temperature 20.0 90 > th dose independent rect. 3 3
305 232.58 temperature 20.0 90 > th dose independent rect. 4 1
320 232.67 radiation 20.0 14400 < th dose independent rect. 3 3
322 232.69 humidity 90.0 10 > th dose dependent rect. 4 2
324 232.73 humidity 70.0 4320 < th dose independent rect. 19 1
354 233.01 humidity 70.0 1440 > th dose independent rect. 19 6
355 233.02 radiation 10.0 1440 < th dose dependent rect. 18 7
359 233.07 humidity 70.0 1440 > th dose independent rect. 19 4
368 233.18 temperature 20.0 270 > th dose independent rect. 1 4
388 233.39 temperature 20.0 10 > th dose independent rect. 4 2
407 233.50 temperature 15.0 270 > th dose dependent rect. 1 4
447 233.92 humidity 70.0 4320 < th dose dependent rect. 19 1
463 233.99 radiation 10.0 1440 < th dose dependent rect. 18 5
488 234.60 radiation 1.0 720 > th dose dependent rect. 18 11
490 234.64 wind 7.0 270 < th dose independent rect. 3 23
498 234.74 radiation 10.0 1440 < th dose dependent rect. 18 3
543 235.19 wind 7.0 270 < th dose independent rect. 15 10
544 235.20 humidity 70.0 720 < th dose independent sin 12 NA
545 235.20 radiation 1.0 720 > th dose independent rect. 18 11
561 235.50 wind 3.0 43200 < th dose independent rect. 2 2
583 235.73 radiation 1.0 720 > th dose independent rect. 18 1
597 235.78 radiation 1.0 720 > th dose dependent rect. 18 1
623 235.89 atmosphere 1015.0 90 < th dose dependent rect. 4 1
644 236.03 wind 7.0 10 < th dose independent rect. 6 22
667 236.35 precipitation 0.1 270 < th dose independent rect. 1 14
668 236.35 precipitation 0.1 270 < th dose dependent rect. 1 14
677 236.51 atmosphere 1015.0 90 < th dose dependent rect. 3 3
688 236.70 atmosphere 1015.0 270 < th dose dependent rect. 1 4
689 236.72 wind 3.0 43200 > th dose independent rect. 2 2
727 237.00 humidity 70.0 1440 < th dose independent rect. 17 18
730 237.03 wind 5.0 270 < th dose independent rect. 5 8
762 237.25 wind 3.0 43200 < th dose dependent rect. 1 3
826 237.58 humidity 70.0 720 > th dose dependent rect. 18 3
840 237.70 wind 1.0 30 < th dose independent rect. 4 14
851 237.79 temperature 25.0 270 < th dose independent rect. 1 4
892 237.98 humidity 80.0 1440 < th dose dependent rect. 16 18
898 238.02 atmosphere 1015.0 10 < th dose dependent rect. 4 2
922 238.14 temperature 20.0 10 > th dose independent rect. 2 5
962 238.44 humidity 70.0 1440 < th dose independent rect. 15 20