BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os07g0622200 Os07g0622200|AK105687
(537 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os07g0622200 Similar to M-160-u1_1 (Fragment) 1062 0.0
Os03g0389700 Similar to M-160-u1_1 (Fragment) 889 0.0
Os08g0484500 Similar to Phospho-2-dehydro-3-deoxyheptonate ... 827 0.0
Os10g0564400 Similar to Phospho-2-dehydro-3-deoxyheptonate ... 725 0.0
Os07g0648500 84 4e-16
Os03g0790100 82 8e-16
Os08g0362600 82 1e-15
>Os07g0622200 Similar to M-160-u1_1 (Fragment)
Length = 537
Score = 1062 bits (2746), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 514/537 (95%), Positives = 514/537 (95%)
Query: 1 MALATNXXXXXXXXXXXXXXXPQPRLAATFLPMRRRTVSAVHAADPAKSNGPVQAAAKAS 60
MALATN PQPRLAATFLPMRRRTVSAVHAADPAKSNGPVQAAAKAS
Sbjct: 1 MALATNSAAVSGGAAAAASSAPQPRLAATFLPMRRRTVSAVHAADPAKSNGPVQAAAKAS 60
Query: 61 SPSTVAAPEKKPVGLGKWTVDSWKAKKALQLPEYPSQEELDSVLKTIETFPPVVFAGEAR 120
SPSTVAAPEKKPVGLGKWTVDSWKAKKALQLPEYPSQEELDSVLKTIETFPPVVFAGEAR
Sbjct: 61 SPSTVAAPEKKPVGLGKWTVDSWKAKKALQLPEYPSQEELDSVLKTIETFPPVVFAGEAR 120
Query: 121 HLEERLADAAMGRAFVLQGGDCAESFKEFNANNIRDTFRILLQMGAVLMFGGQMPVVKVG 180
HLEERLADAAMGRAFVLQGGDCAESFKEFNANNIRDTFRILLQMGAVLMFGGQMPVVKVG
Sbjct: 121 HLEERLADAAMGRAFVLQGGDCAESFKEFNANNIRDTFRILLQMGAVLMFGGQMPVVKVG 180
Query: 181 RMAGQFAKPRSDSFEERDGVKLPSYRGDNINGDTFDEKSRVPDPQRMIRAYAQSVATLNL 240
RMAGQFAKPRSDSFEERDGVKLPSYRGDNINGDTFDEKSRVPDPQRMIRAYAQSVATLNL
Sbjct: 181 RMAGQFAKPRSDSFEERDGVKLPSYRGDNINGDTFDEKSRVPDPQRMIRAYAQSVATLNL 240
Query: 241 LRAFATGGYAAMQRVTQWNLDFMDHSEQGDRYRELAHRVDEALGFMTAAGLTVDHPIMTT 300
LRAFATGGYAAMQRVTQWNLDFMDHSEQGDRYRELAHRVDEALGFMTAAGLTVDHPIMTT
Sbjct: 241 LRAFATGGYAAMQRVTQWNLDFMDHSEQGDRYRELAHRVDEALGFMTAAGLTVDHPIMTT 300
Query: 301 TDFWTSHECLLLPYEQSLTREDSTSGLFYDCSAHMLWVGERTRQLDGAHVEFLRGVANPL 360
TDFWTSHECLLLPYEQSLTREDSTSGLFYDCSAHMLWVGERTRQLDGAHVEFLRGVANPL
Sbjct: 301 TDFWTSHECLLLPYEQSLTREDSTSGLFYDCSAHMLWVGERTRQLDGAHVEFLRGVANPL 360
Query: 361 GIKVSDKMNPRDLVKLIEILNPSNKPGRITIITRMGAENMRVKLPHLIRAVRNSGQIVTW 420
GIKVSDKMNPRDLVKLIEILNPSNKPGRITIITRMGAENMRVKLPHLIRAVRNSGQIVTW
Sbjct: 361 GIKVSDKMNPRDLVKLIEILNPSNKPGRITIITRMGAENMRVKLPHLIRAVRNSGQIVTW 420
Query: 421 ITDPMHGNTIKAPCGLKTRPFDSILAEVRAFFDVHDQEGSHPGGIHLEMTGQNVTECIGG 480
ITDPMHGNTIKAPCGLKTRPFDSILAEVRAFFDVHDQEGSHPGGIHLEMTGQNVTECIGG
Sbjct: 421 ITDPMHGNTIKAPCGLKTRPFDSILAEVRAFFDVHDQEGSHPGGIHLEMTGQNVTECIGG 480
Query: 481 SRTVTFDDLSDRYHTHCDPRLNASQSLELAFIIAEXXXXXXXXSGVNSNLPLPPLAF 537
SRTVTFDDLSDRYHTHCDPRLNASQSLELAFIIAE SGVNSNLPLPPLAF
Sbjct: 481 SRTVTFDDLSDRYHTHCDPRLNASQSLELAFIIAERLRRRRMRSGVNSNLPLPPLAF 537
>Os03g0389700 Similar to M-160-u1_1 (Fragment)
Length = 554
Score = 889 bits (2297), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 432/530 (81%), Positives = 465/530 (87%), Gaps = 23/530 (4%)
Query: 27 AATFLPMRRRT--VSAVHAADPAKSNGPVQ--AAAKASSPSTVAAPEK------------ 70
A+ F+ M+RR V AVHAA+P+K N PV +AAK SSPS A +
Sbjct: 25 ASAFVTMKRRATAVRAVHAAEPSK-NPPVGVPSAAKTSSPSVAAPEKAPVAAAPAPVAPA 83
Query: 71 ----KPVGLGKWTVDSWKAKKALQLPEYPSQEELDSVLKTIETFPPVVFAGEARHLEERL 126
K V +W VDSW+ KKALQLPEYP+ EL++VLKTIE FPP+VFAGEARHLEERL
Sbjct: 84 PAATKQVAPARWAVDSWRTKKALQLPEYPNAAELEAVLKTIEAFPPIVFAGEARHLEERL 143
Query: 127 ADAAMGRAFVLQGGDCAESFKEFNANNIRDTFRILLQMGAVLMFGGQMPVVKVGRMAGQF 186
ADAAMGRAF+LQGGDCAESFKEFN NNIRDTFR+LLQM AVL FGGQMPV+KVGRMAGQF
Sbjct: 144 ADAAMGRAFLLQGGDCAESFKEFNGNNIRDTFRVLLQMSAVLTFGGQMPVIKVGRMAGQF 203
Query: 187 AKPRSDSFEERDGVKLPSYRGDNINGDTFDEKSRVPDPQRMIRAYAQSVATLNLLRAFAT 246
AKPRS++FEERDGVKLPSYRGDNINGD F+EKSR+PDPQRM+RAYAQS ATLNLLRAFAT
Sbjct: 204 AKPRSEAFEERDGVKLPSYRGDNINGDAFNEKSRIPDPQRMVRAYAQSAATLNLLRAFAT 263
Query: 247 GGYAAMQRVTQWNLDFMDHSEQGDRYRELAHRVDEALGFMTAAGLTVDHPIMTTTDFWTS 306
GGYAAMQRVTQWNLDF HSEQGDRYRELAHRVDEALGFM+AAGLTVDHP+MT+TDFWTS
Sbjct: 264 GGYAAMQRVTQWNLDFTQHSEQGDRYRELAHRVDEALGFMSAAGLTVDHPLMTSTDFWTS 323
Query: 307 HECLLLPYEQSLTREDSTSGLFYDCSAHMLWVGERTRQLDGAHVEFLRGVANPLGIKVSD 366
HECLLLPYEQSLTR+DST+G FYDCSAHMLWVGERTRQLDGAHVEFLRGVANPLGIKVSD
Sbjct: 324 HECLLLPYEQSLTRQDSTTGHFYDCSAHMLWVGERTRQLDGAHVEFLRGVANPLGIKVSD 383
Query: 367 KMNPRDLVKLIEILNPSNKPGRITIITRMGAENMRVKLPHLIRAVRNSGQIVTWITDPMH 426
KMNP +LVKLIEILNPSNKPGRITIITRMGAENMRVKLPHLIRAVR++GQIVTWITDPMH
Sbjct: 384 KMNPTELVKLIEILNPSNKPGRITIITRMGAENMRVKLPHLIRAVRHAGQIVTWITDPMH 443
Query: 427 GNTIKAPCGLKTRPFDSILAEVRAFFDVHDQEGSHPGGIHLEMTGQNVTECIGGSRTVTF 486
GNTIKAPCGLKTRPFDSI AEVRAFFDVHDQEGSHPGG+HLEMTGQNVTECIGGSRTVTF
Sbjct: 444 GNTIKAPCGLKTRPFDSI-AEVRAFFDVHDQEGSHPGGVHLEMTGQNVTECIGGSRTVTF 502
Query: 487 DDLSDRYHTHCDPRLNASQSLELAFIIAEXXXXXXXXSG-VNSNLPLPPL 535
DDL DRYHTHCDPRLNASQSLEL+FIIAE S +N+ LPLPP
Sbjct: 503 DDLGDRYHTHCDPRLNASQSLELSFIIAERLRRKRIRSSKLNNMLPLPPF 552
>Os08g0484500 Similar to Phospho-2-dehydro-3-deoxyheptonate aldolase 1,
chloroplast precursor (EC 2.5.1.54)
(Phospho-2-keto-3-deoxyheptonate aldolase 1) (DAHP
synthetase 1) (3-deoxy-D-arabino-heptulosonate
7-phosphate synthase 1)
Length = 505
Score = 827 bits (2135), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 381/439 (86%), Positives = 413/439 (94%)
Query: 77 KWTVDSWKAKKALQLPEYPSQEELDSVLKTIETFPPVVFAGEARHLEERLADAAMGRAFV 136
KW++ SW++ ALQ PEYP + ELD VL+T+E FPP+VFAGEAR LEERLA+AA+GRAF+
Sbjct: 41 KWSLGSWRSLTALQQPEYPDKAELDEVLRTVEAFPPIVFAGEARKLEERLAEAAVGRAFL 100
Query: 137 LQGGDCAESFKEFNANNIRDTFRILLQMGAVLMFGGQMPVVKVGRMAGQFAKPRSDSFEE 196
LQGGDCAESFKEFNANNIRDTFR+LLQM VLMFGGQMP++KVGRMAGQFAKPRSD FEE
Sbjct: 101 LQGGDCAESFKEFNANNIRDTFRVLLQMSVVLMFGGQMPIIKVGRMAGQFAKPRSDGFEE 160
Query: 197 RDGVKLPSYRGDNINGDTFDEKSRVPDPQRMIRAYAQSVATLNLLRAFATGGYAAMQRVT 256
RDGVKLPSYRGDNINGD+FDEKSR+PDP RMIRAY+QS ATLNLLRAFATGGYAAMQRVT
Sbjct: 161 RDGVKLPSYRGDNINGDSFDEKSRLPDPHRMIRAYSQSAATLNLLRAFATGGYAAMQRVT 220
Query: 257 QWNLDFMDHSEQGDRYRELAHRVDEALGFMTAAGLTVDHPIMTTTDFWTSHECLLLPYEQ 316
QWNLDF +HSEQGDRY ELAHRVDEALGFM AAGLT+DHPIMTTT+FWTSHECLLLPYEQ
Sbjct: 221 QWNLDFTEHSEQGDRYMELAHRVDEALGFMAAAGLTMDHPIMTTTEFWTSHECLLLPYEQ 280
Query: 317 SLTREDSTSGLFYDCSAHMLWVGERTRQLDGAHVEFLRGVANPLGIKVSDKMNPRDLVKL 376
+LTREDSTSGL+YDCSAH LWVGERTRQLD AHVEFLRG+ANPLGIKVSDKM+P++LVKL
Sbjct: 281 ALTREDSTSGLYYDCSAHFLWVGERTRQLDCAHVEFLRGIANPLGIKVSDKMDPKELVKL 340
Query: 377 IEILNPSNKPGRITIITRMGAENMRVKLPHLIRAVRNSGQIVTWITDPMHGNTIKAPCGL 436
I+ILNP NKPGRITIITRMG ENMRVKLPHLIRAVR +GQIVTW+TDPMHGNT+KAPCGL
Sbjct: 341 IDILNPQNKPGRITIITRMGPENMRVKLPHLIRAVRGAGQIVTWVTDPMHGNTMKAPCGL 400
Query: 437 KTRPFDSILAEVRAFFDVHDQEGSHPGGIHLEMTGQNVTECIGGSRTVTFDDLSDRYHTH 496
KTR FD ILAEVRAFFDVH+QEGSHPGG+HLEMTGQNVTECIGGSRTVTFDDL RYHTH
Sbjct: 401 KTRSFDRILAEVRAFFDVHEQEGSHPGGVHLEMTGQNVTECIGGSRTVTFDDLGSRYHTH 460
Query: 497 CDPRLNASQSLELAFIIAE 515
CDPRLNASQSLELAFIIAE
Sbjct: 461 CDPRLNASQSLELAFIIAE 479
>Os10g0564400 Similar to Phospho-2-dehydro-3-deoxyheptonate aldolase 2,
chloroplast precursor (EC 2.5.1.54)
(Phospho-2-keto-3-deoxyheptonate aldolase 2) (DAHP
synthetase 2) (3-deoxy-D-arabino-heptulosonate
7-phosphate synthase 2)
Length = 508
Score = 725 bits (1871), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 335/438 (76%), Positives = 376/438 (85%)
Query: 78 WTVDSWKAKKALQLPEYPSQEELDSVLKTIETFPPVVFAGEARHLEERLADAAMGRAFVL 137
W SW+A+ A Q+PEYP L+ + + +FPP+VFAGEAR LEERL DAAMGRAF+L
Sbjct: 52 WEPGSWRARPARQIPEYPDAAALEGAERELASFPPLVFAGEARKLEERLGDAAMGRAFLL 111
Query: 138 QGGDCAESFKEFNANNIRDTFRILLQMGAVLMFGGQMPVVKVGRMAGQFAKPRSDSFEER 197
QGGDCAESFKEF ANNIRDTFR++LQM VL FGGQMP +KVGRMAGQFAKPRS+ E
Sbjct: 112 QGGDCAESFKEFAANNIRDTFRLMLQMAVVLTFGGQMPTIKVGRMAGQFAKPRSNPTETI 171
Query: 198 DGVKLPSYRGDNINGDTFDEKSRVPDPQRMIRAYAQSVATLNLLRAFATGGYAAMQRVTQ 257
DGV LPSYRGD IN D FDEKSR PDP+R+IRAY+QS +TLNLLR FA GGYA +QRVTQ
Sbjct: 172 DGVTLPSYRGDIINSDGFDEKSRAPDPERLIRAYSQSASTLNLLRGFAHGGYADLQRVTQ 231
Query: 258 WNLDFMDHSEQGDRYRELAHRVDEALGFMTAAGLTVDHPIMTTTDFWTSHECLLLPYEQS 317
WNLDF+ S QGDRY EL+ RV +A+GFM AAGLT HPIMTT +FWTSHECL LPYEQ+
Sbjct: 232 WNLDFLRDSTQGDRYMELSERVHDAIGFMVAAGLTPQHPIMTTAEFWTSHECLHLPYEQA 291
Query: 318 LTREDSTSGLFYDCSAHMLWVGERTRQLDGAHVEFLRGVANPLGIKVSDKMNPRDLVKLI 377
LTR DS SGL+YDCSAHMLWVGERTRQLDGAHVEFLRG++NPLG+KVSDK+ P +LVKL
Sbjct: 292 LTRVDSISGLYYDCSAHMLWVGERTRQLDGAHVEFLRGISNPLGVKVSDKLEPSELVKLC 351
Query: 378 EILNPSNKPGRITIITRMGAENMRVKLPHLIRAVRNSGQIVTWITDPMHGNTIKAPCGLK 437
EILNP NKPGR+TIITRMGAEN RVKLPH+IRAVR +G IVTW++DPMHGNTI APCGLK
Sbjct: 352 EILNPHNKPGRLTIITRMGAENTRVKLPHMIRAVRQAGLIVTWVSDPMHGNTISAPCGLK 411
Query: 438 TRPFDSILAEVRAFFDVHDQEGSHPGGIHLEMTGQNVTECIGGSRTVTFDDLSDRYHTHC 497
TR FD+I E+RAFFDVH+QEGS+PGGIHLEMTGQNVTECIGGS+TVT DDLS RY THC
Sbjct: 412 TRSFDAIRCELRAFFDVHEQEGSYPGGIHLEMTGQNVTECIGGSKTVTLDDLSSRYRTHC 471
Query: 498 DPRLNASQSLELAFIIAE 515
DPRLNASQSLELAF IA+
Sbjct: 472 DPRLNASQSLELAFAIAD 489
>Os07g0648500
Length = 213
Score = 83.6 bits (205), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 39/59 (66%), Positives = 46/59 (77%), Gaps = 4/59 (6%)
Query: 398 ENMRVKLPHLIRAVRNSGQIVTWITDPMHGNTIKAPCGLKTRPFDSILAEVRAFFDVHD 456
EN+RVKLPHLIRAV + QIVTW+TDPMHGNT+KAPCGLKTR F A ++ F + D
Sbjct: 109 ENIRVKLPHLIRAVHVAVQIVTWVTDPMHGNTMKAPCGLKTRSF----ATFQSLFSMAD 163
>Os03g0790100
Length = 229
Score = 82.4 bits (202), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 36/44 (81%), Positives = 40/44 (90%)
Query: 398 ENMRVKLPHLIRAVRNSGQIVTWITDPMHGNTIKAPCGLKTRPF 441
EN+RVKLPHLIRAV + QIVTW+TDPMHGNT+KAPCGLKTR F
Sbjct: 94 ENIRVKLPHLIRAVHVAVQIVTWVTDPMHGNTMKAPCGLKTRSF 137
>Os08g0362600
Length = 306
Score = 82.0 bits (201), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 36/44 (81%), Positives = 40/44 (90%)
Query: 398 ENMRVKLPHLIRAVRNSGQIVTWITDPMHGNTIKAPCGLKTRPF 441
EN+RVKLPHLIRAV + QIVTW+TDPMHGNT+KAPCGLKTR F
Sbjct: 250 ENIRVKLPHLIRAVHVAVQIVTWVTDPMHGNTMKAPCGLKTRSF 293
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.319 0.134 0.402
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 18,231,740
Number of extensions: 776784
Number of successful extensions: 2195
Number of sequences better than 1.0e-10: 7
Number of HSP's gapped: 2193
Number of HSP's successfully gapped: 7
Length of query: 537
Length of database: 17,035,801
Length adjustment: 106
Effective length of query: 431
Effective length of database: 11,501,117
Effective search space: 4956981427
Effective search space used: 4956981427
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 158 (65.5 bits)