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Os08g0484500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Phospho-2-dehydro-3-deoxyheptonate aldolase 1, chloroplast precursor (EC 2.5.1.54) (Phospho-2-keto-3-deoxyheptonate aldolase 1) (DAHP synthetase 1) (3-deoxy-D-arabino-heptulosonate 7-phosphate synthase 1).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 24.89 | 0.234 | 14.1 | 1.17 | 0.75 | -1.14 | -0.0286 | 1.45 | -0.0503 | 20.9 | 9.882 | 4162 | -- | -- |
| 28.08 | 0.247 | 14.1 | 0.956 | 0.697 | -1.17 | -0.215 | -- | -0.0643 | 21.1 | 9.08 | 4300 | -- | -- |
| 24.89 | 0.232 | 14.1 | 1.17 | 0.75 | -1.14 | -- | 1.45 | -0.0503 | 20.9 | 9.883 | 4161 | -- | -- |
| 26.84 | 0.241 | 14.1 | 0.84 | 0.737 | -1.2 | -- | -- | -0.139 | 20.9 | 11.31 | 4305 | -- | -- |
| 55.82 | 0.348 | 14.1 | 1.16 | -- | -1.11 | -- | 1.47 | -0.0689 | -- | 9.437 | 4393 | -- | -- |
| 53.13 | 0.342 | 14.2 | 0.281 | 0.737 | -- | -0.0942 | -- | -0.377 | 20.5 | -- | -- | -- | -- |
| 53.16 | 0.341 | 14.2 | 0.284 | 0.737 | -- | -- | -- | -0.377 | 20.5 | -- | -- | -- | -- |
| 57.77 | 0.354 | 14.1 | 0.836 | -- | -1.19 | -- | -- | -0.148 | -- | 11.49 | 4399 | -- | -- |
| 38.15 | 0.288 | 14.2 | -- | 0.821 | -0.919 | -- | -- | -0.266 | 20.7 | 9.912 | 2027 | -- | -- |
| 83.63 | 0.427 | 14.2 | 0.281 | -- | -- | -- | -- | -0.384 | -- | -- | -- | -- | -- |
| 55.28 | 0.348 | 14.2 | -- | 0.736 | -- | -- | -- | -0.408 | 20.6 | -- | -- | -- | -- |
| 70.84 | 0.392 | 14.1 | -- | -- | -0.774 | -- | -- | -0.291 | -- | 6.874 | 2926 | -- | -- |
| 85.71 | 0.432 | 14.2 | -- | -- | -- | -- | -- | -0.415 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 23.84 | temperature | 15 | 1440 | > th | dose dependent | rect. | 18 | 14 |
| 9 | 23.93 | temperature | 30 | 1440 | < th | dose dependent | rect. | 18 | 14 |
| 28 | 24.00 | temperature | 15 | 1440 | > th | dose dependent | sin | 11 | NA |
| 53 | 24.07 | radiation | 1 | 14400 | < th | dose independent | rect. | 18 | 13 |
| 67 | 24.11 | temperature | 30 | 1440 | < th | dose dependent | sin | 11 | NA |
| 118 | 24.26 | radiation | 1 | 14400 | > th | dose independent | rect. | 18 | 13 |
| 146 | 24.34 | temperature | 15 | 1440 | > th | dose dependent | rect. | 1 | 7 |
| 150 | 24.35 | temperature | 15 | 1440 | > th | dose dependent | rect. | 3 | 5 |
| 167 | 24.37 | temperature | 30 | 1440 | < th | dose dependent | rect. | 1 | 7 |
| 173 | 24.38 | temperature | 30 | 1440 | < th | dose dependent | rect. | 3 | 5 |
| 277 | 24.57 | temperature | 20 | 4320 | > th | dose dependent | rect. | 15 | 4 |
| 316 | 24.61 | temperature | 20 | 4320 | > th | dose dependent | rect. | 13 | 9 |
| 357 | 24.65 | temperature | 15 | 1440 | > th | dose dependent | rect. | 21 | 2 |
| 391 | 24.67 | temperature | 20 | 4320 | > th | dose dependent | rect. | 17 | 1 |
| 439 | 24.71 | temperature | 30 | 4320 | < th | dose dependent | rect. | 21 | 1 |
| 483 | 24.73 | radiation | 1 | 14400 | < th | dose dependent | rect. | 4 | 3 |
| 606 | 24.80 | temperature | 20 | 4320 | > th | dose dependent | sin | 19 | NA |
| 729 | 24.86 | radiation | 1 | 14400 | > th | dose independent | rect. | 17 | 19 |
| 825 | 24.90 | radiation | 1 | 14400 | < th | dose independent | rect. | 17 | 19 |
| 937 | 24.94 | temperature | 10 | 4320 | > th | dose dependent | no | NA | NA |
| 990 | 24.95 | temperature | 10 | 4320 | > th | dose dependent | rect. | 1 | 23 |
| 993 | 24.95 | temperature | 10 | 4320 | > th | dose dependent | rect. | 20 | 23 |
