BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os08g0484500 Os08g0484500|AK070359
(505 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os08g0484500 Similar to Phospho-2-dehydro-3-deoxyheptonate ... 944 0.0
Os03g0389700 Similar to M-160-u1_1 (Fragment) 813 0.0
Os07g0622200 Similar to M-160-u1_1 (Fragment) 801 0.0
Os10g0564400 Similar to Phospho-2-dehydro-3-deoxyheptonate ... 719 0.0
Os03g0790100 90 3e-18
Os08g0362600 90 3e-18
Os07g0648500 90 3e-18
>Os08g0484500 Similar to Phospho-2-dehydro-3-deoxyheptonate aldolase 1,
chloroplast precursor (EC 2.5.1.54)
(Phospho-2-keto-3-deoxyheptonate aldolase 1) (DAHP
synthetase 1) (3-deoxy-D-arabino-heptulosonate
7-phosphate synthase 1)
Length = 505
Score = 944 bits (2440), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 453/466 (97%), Positives = 453/466 (97%)
Query: 40 SKWSLGSWRSLTALQQPEYPDKAELDEVLRTVEAFPPIVFAGXXXXXXXXXXXXXVGRAF 99
SKWSLGSWRSLTALQQPEYPDKAELDEVLRTVEAFPPIVFAG VGRAF
Sbjct: 40 SKWSLGSWRSLTALQQPEYPDKAELDEVLRTVEAFPPIVFAGEARKLEERLAEAAVGRAF 99
Query: 100 LLQGGDCAESFKEFNANNIRDTFRVLLQMSVVLMFGGQMPIIKVGRMAGQFAKPRSDGFE 159
LLQGGDCAESFKEFNANNIRDTFRVLLQMSVVLMFGGQMPIIKVGRMAGQFAKPRSDGFE
Sbjct: 100 LLQGGDCAESFKEFNANNIRDTFRVLLQMSVVLMFGGQMPIIKVGRMAGQFAKPRSDGFE 159
Query: 160 ERDGVKLPSYRGDNINGDSFDEKSRLPDPHRMIRAYSQSAATLNLLRAFATGGYAAMQRV 219
ERDGVKLPSYRGDNINGDSFDEKSRLPDPHRMIRAYSQSAATLNLLRAFATGGYAAMQRV
Sbjct: 160 ERDGVKLPSYRGDNINGDSFDEKSRLPDPHRMIRAYSQSAATLNLLRAFATGGYAAMQRV 219
Query: 220 TQWNLDFTEHSEQGDRYMELAHRVDEALGFMAAAGLTMDHPIMTTTEFWTSHECLLLPYE 279
TQWNLDFTEHSEQGDRYMELAHRVDEALGFMAAAGLTMDHPIMTTTEFWTSHECLLLPYE
Sbjct: 220 TQWNLDFTEHSEQGDRYMELAHRVDEALGFMAAAGLTMDHPIMTTTEFWTSHECLLLPYE 279
Query: 280 QALTREDSTSGLYYDCSAHFLWVGERTRQLDCAHVEFLRGIANPLGIKVSDKMDPKELVK 339
QALTREDSTSGLYYDCSAHFLWVGERTRQLDCAHVEFLRGIANPLGIKVSDKMDPKELVK
Sbjct: 280 QALTREDSTSGLYYDCSAHFLWVGERTRQLDCAHVEFLRGIANPLGIKVSDKMDPKELVK 339
Query: 340 LIDILNPQNKPGRITIITRMGPENMRVKLPHLIRAVRGAGQIVTWVTDPMHGNTMKAPCG 399
LIDILNPQNKPGRITIITRMGPENMRVKLPHLIRAVRGAGQIVTWVTDPMHGNTMKAPCG
Sbjct: 340 LIDILNPQNKPGRITIITRMGPENMRVKLPHLIRAVRGAGQIVTWVTDPMHGNTMKAPCG 399
Query: 400 LKTRSFDRILAEVRAFFDVHEQEGSHPGGVHLEMTGQNVTECIGGSRTVTFDDLGSRYHT 459
LKTRSFDRILAEVRAFFDVHEQEGSHPGGVHLEMTGQNVTECIGGSRTVTFDDLGSRYHT
Sbjct: 400 LKTRSFDRILAEVRAFFDVHEQEGSHPGGVHLEMTGQNVTECIGGSRTVTFDDLGSRYHT 459
Query: 460 HCDPRLNASQSLELAFIIAERLRKRRIASWQLNKNSHLGNIPSLGL 505
HCDPRLNASQSLELAFIIAERLRKRRIASWQLNKNSHLGNIPSLGL
Sbjct: 460 HCDPRLNASQSLELAFIIAERLRKRRIASWQLNKNSHLGNIPSLGL 505
>Os03g0389700 Similar to M-160-u1_1 (Fragment)
Length = 554
Score = 813 bits (2099), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 378/453 (83%), Positives = 415/453 (91%), Gaps = 1/453 (0%)
Query: 40 SKWSLGSWRSLTALQQPEYPDKAELDEVLRTVEAFPPIVFAGXXXXXXXXXXXXXVGRAF 99
++W++ SWR+ ALQ PEYP+ AEL+ VL+T+EAFPPIVFAG +GRAF
Sbjct: 93 ARWAVDSWRTKKALQLPEYPNAAELEAVLKTIEAFPPIVFAGEARHLEERLADAAMGRAF 152
Query: 100 LLQGGDCAESFKEFNANNIRDTFRVLLQMSVVLMFGGQMPIIKVGRMAGQFAKPRSDGFE 159
LLQGGDCAESFKEFN NNIRDTFRVLLQMS VL FGGQMP+IKVGRMAGQFAKPRS+ FE
Sbjct: 153 LLQGGDCAESFKEFNGNNIRDTFRVLLQMSAVLTFGGQMPVIKVGRMAGQFAKPRSEAFE 212
Query: 160 ERDGVKLPSYRGDNINGDSFDEKSRLPDPHRMIRAYSQSAATLNLLRAFATGGYAAMQRV 219
ERDGVKLPSYRGDNINGD+F+EKSR+PDP RM+RAY+QSAATLNLLRAFATGGYAAMQRV
Sbjct: 213 ERDGVKLPSYRGDNINGDAFNEKSRIPDPQRMVRAYAQSAATLNLLRAFATGGYAAMQRV 272
Query: 220 TQWNLDFTEHSEQGDRYMELAHRVDEALGFMAAAGLTMDHPIMTTTEFWTSHECLLLPYE 279
TQWNLDFT+HSEQGDRY ELAHRVDEALGFM+AAGLT+DHP+MT+T+FWTSHECLLLPYE
Sbjct: 273 TQWNLDFTQHSEQGDRYRELAHRVDEALGFMSAAGLTVDHPLMTSTDFWTSHECLLLPYE 332
Query: 280 QALTREDSTSGLYYDCSAHFLWVGERTRQLDCAHVEFLRGIANPLGIKVSDKMDPKELVK 339
Q+LTR+DST+G +YDCSAH LWVGERTRQLD AHVEFLRG+ANPLGIKVSDKM+P ELVK
Sbjct: 333 QSLTRQDSTTGHFYDCSAHMLWVGERTRQLDGAHVEFLRGVANPLGIKVSDKMNPTELVK 392
Query: 340 LIDILNPQNKPGRITIITRMGPENMRVKLPHLIRAVRGAGQIVTWVTDPMHGNTMKAPCG 399
LI+ILNP NKPGRITIITRMG ENMRVKLPHLIRAVR AGQIVTW+TDPMHGNT+KAPCG
Sbjct: 393 LIEILNPSNKPGRITIITRMGAENMRVKLPHLIRAVRHAGQIVTWITDPMHGNTIKAPCG 452
Query: 400 LKTRSFDRILAEVRAFFDVHEQEGSHPGGVHLEMTGQNVTECIGGSRTVTFDDLGSRYHT 459
LKTR FD I AEVRAFFDVH+QEGSHPGGVHLEMTGQNVTECIGGSRTVTFDDLG RYHT
Sbjct: 453 LKTRPFDSI-AEVRAFFDVHDQEGSHPGGVHLEMTGQNVTECIGGSRTVTFDDLGDRYHT 511
Query: 460 HCDPRLNASQSLELAFIIAERLRKRRIASWQLN 492
HCDPRLNASQSLEL+FIIAERLR++RI S +LN
Sbjct: 512 HCDPRLNASQSLELSFIIAERLRRKRIRSSKLN 544
>Os07g0622200 Similar to M-160-u1_1 (Fragment)
Length = 537
Score = 801 bits (2070), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 370/439 (84%), Positives = 401/439 (91%)
Query: 41 KWSLGSWRSLTALQQPEYPDKAELDEVLRTVEAFPPIVFAGXXXXXXXXXXXXXVGRAFL 100
KW++ SW++ ALQ PEYP + ELD VL+T+E FPP+VFAG +GRAF+
Sbjct: 77 KWTVDSWKAKKALQLPEYPSQEELDSVLKTIETFPPVVFAGEARHLEERLADAAMGRAFV 136
Query: 101 LQGGDCAESFKEFNANNIRDTFRVLLQMSVVLMFGGQMPIIKVGRMAGQFAKPRSDGFEE 160
LQGGDCAESFKEFNANNIRDTFR+LLQM VLMFGGQMP++KVGRMAGQFAKPRSD FEE
Sbjct: 137 LQGGDCAESFKEFNANNIRDTFRILLQMGAVLMFGGQMPVVKVGRMAGQFAKPRSDSFEE 196
Query: 161 RDGVKLPSYRGDNINGDSFDEKSRLPDPHRMIRAYSQSAATLNLLRAFATGGYAAMQRVT 220
RDGVKLPSYRGDNINGD+FDEKSR+PDP RMIRAY+QS ATLNLLRAFATGGYAAMQRVT
Sbjct: 197 RDGVKLPSYRGDNINGDTFDEKSRVPDPQRMIRAYAQSVATLNLLRAFATGGYAAMQRVT 256
Query: 221 QWNLDFTEHSEQGDRYMELAHRVDEALGFMAAAGLTMDHPIMTTTEFWTSHECLLLPYEQ 280
QWNLDF +HSEQGDRY ELAHRVDEALGFM AAGLT+DHPIMTTT+FWTSHECLLLPYEQ
Sbjct: 257 QWNLDFMDHSEQGDRYRELAHRVDEALGFMTAAGLTVDHPIMTTTDFWTSHECLLLPYEQ 316
Query: 281 ALTREDSTSGLYYDCSAHFLWVGERTRQLDCAHVEFLRGIANPLGIKVSDKMDPKELVKL 340
+LTREDSTSGL+YDCSAH LWVGERTRQLD AHVEFLRG+ANPLGIKVSDKM+P++LVKL
Sbjct: 317 SLTREDSTSGLFYDCSAHMLWVGERTRQLDGAHVEFLRGVANPLGIKVSDKMNPRDLVKL 376
Query: 341 IDILNPQNKPGRITIITRMGPENMRVKLPHLIRAVRGAGQIVTWVTDPMHGNTMKAPCGL 400
I+ILNP NKPGRITIITRMG ENMRVKLPHLIRAVR +GQIVTW+TDPMHGNT+KAPCGL
Sbjct: 377 IEILNPSNKPGRITIITRMGAENMRVKLPHLIRAVRNSGQIVTWITDPMHGNTIKAPCGL 436
Query: 401 KTRSFDRILAEVRAFFDVHEQEGSHPGGVHLEMTGQNVTECIGGSRTVTFDDLGSRYHTH 460
KTR FD ILAEVRAFFDVH+QEGSHPGG+HLEMTGQNVTECIGGSRTVTFDDL RYHTH
Sbjct: 437 KTRPFDSILAEVRAFFDVHDQEGSHPGGIHLEMTGQNVTECIGGSRTVTFDDLSDRYHTH 496
Query: 461 CDPRLNASQSLELAFIIAE 479
CDPRLNASQSLELAFIIAE
Sbjct: 497 CDPRLNASQSLELAFIIAE 515
>Os10g0564400 Similar to Phospho-2-dehydro-3-deoxyheptonate aldolase 2,
chloroplast precursor (EC 2.5.1.54)
(Phospho-2-keto-3-deoxyheptonate aldolase 2) (DAHP
synthetase 2) (3-deoxy-D-arabino-heptulosonate
7-phosphate synthase 2)
Length = 508
Score = 719 bits (1857), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 343/451 (76%), Positives = 375/451 (83%)
Query: 40 SKWSLGSWRSLTALQQPEYPDKAELDEVLRTVEAFPPIVFAGXXXXXXXXXXXXXVGRAF 99
S W GSWR+ A Q PEYPD A L+ R + +FPP+VFAG +GRAF
Sbjct: 50 SGWEPGSWRARPARQIPEYPDAAALEGAERELASFPPLVFAGEARKLEERLGDAAMGRAF 109
Query: 100 LLQGGDCAESFKEFNANNIRDTFRVLLQMSVVLMFGGQMPIIKVGRMAGQFAKPRSDGFE 159
LLQGGDCAESFKEF ANNIRDTFR++LQM+VVL FGGQMP IKVGRMAGQFAKPRS+ E
Sbjct: 110 LLQGGDCAESFKEFAANNIRDTFRLMLQMAVVLTFGGQMPTIKVGRMAGQFAKPRSNPTE 169
Query: 160 ERDGVKLPSYRGDNINGDSFDEKSRLPDPHRMIRAYSQSAATLNLLRAFATGGYAAMQRV 219
DGV LPSYRGD IN D FDEKSR PDP R+IRAYSQSA+TLNLLR FA GGYA +QRV
Sbjct: 170 TIDGVTLPSYRGDIINSDGFDEKSRAPDPERLIRAYSQSASTLNLLRGFAHGGYADLQRV 229
Query: 220 TQWNLDFTEHSEQGDRYMELAHRVDEALGFMAAAGLTMDHPIMTTTEFWTSHECLLLPYE 279
TQWNLDF S QGDRYMEL+ RV +A+GFM AAGLT HPIMTT EFWTSHECL LPYE
Sbjct: 230 TQWNLDFLRDSTQGDRYMELSERVHDAIGFMVAAGLTPQHPIMTTAEFWTSHECLHLPYE 289
Query: 280 QALTREDSTSGLYYDCSAHFLWVGERTRQLDCAHVEFLRGIANPLGIKVSDKMDPKELVK 339
QALTR DS SGLYYDCSAH LWVGERTRQLD AHVEFLRGI+NPLG+KVSDK++P ELVK
Sbjct: 290 QALTRVDSISGLYYDCSAHMLWVGERTRQLDGAHVEFLRGISNPLGVKVSDKLEPSELVK 349
Query: 340 LIDILNPQNKPGRITIITRMGPENMRVKLPHLIRAVRGAGQIVTWVTDPMHGNTMKAPCG 399
L +ILNP NKPGR+TIITRMG EN RVKLPH+IRAVR AG IVTWV+DPMHGNT+ APCG
Sbjct: 350 LCEILNPHNKPGRLTIITRMGAENTRVKLPHMIRAVRQAGLIVTWVSDPMHGNTISAPCG 409
Query: 400 LKTRSFDRILAEVRAFFDVHEQEGSHPGGVHLEMTGQNVTECIGGSRTVTFDDLGSRYHT 459
LKTRSFD I E+RAFFDVHEQEGS+PGG+HLEMTGQNVTECIGGS+TVT DDL SRY T
Sbjct: 410 LKTRSFDAIRCELRAFFDVHEQEGSYPGGIHLEMTGQNVTECIGGSKTVTLDDLSSRYRT 469
Query: 460 HCDPRLNASQSLELAFIIAERLRKRRIASWQ 490
HCDPRLNASQSLELAF IA+RLRK+R +W
Sbjct: 470 HCDPRLNASQSLELAFAIADRLRKKRDRAWN 500
>Os03g0790100
Length = 229
Score = 90.1 bits (222), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 41/45 (91%), Positives = 42/45 (93%)
Query: 361 PENMRVKLPHLIRAVRGAGQIVTWVTDPMHGNTMKAPCGLKTRSF 405
PEN+RVKLPHLIRAV A QIVTWVTDPMHGNTMKAPCGLKTRSF
Sbjct: 93 PENIRVKLPHLIRAVHVAVQIVTWVTDPMHGNTMKAPCGLKTRSF 137
>Os08g0362600
Length = 306
Score = 90.1 bits (222), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 41/45 (91%), Positives = 42/45 (93%)
Query: 361 PENMRVKLPHLIRAVRGAGQIVTWVTDPMHGNTMKAPCGLKTRSF 405
PEN+RVKLPHLIRAV A QIVTWVTDPMHGNTMKAPCGLKTRSF
Sbjct: 249 PENIRVKLPHLIRAVHVAVQIVTWVTDPMHGNTMKAPCGLKTRSF 293
>Os07g0648500
Length = 213
Score = 90.1 bits (222), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 41/45 (91%), Positives = 42/45 (93%)
Query: 361 PENMRVKLPHLIRAVRGAGQIVTWVTDPMHGNTMKAPCGLKTRSF 405
PEN+RVKLPHLIRAV A QIVTWVTDPMHGNTMKAPCGLKTRSF
Sbjct: 108 PENIRVKLPHLIRAVHVAVQIVTWVTDPMHGNTMKAPCGLKTRSF 152
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.321 0.137 0.417
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 16,264,546
Number of extensions: 663910
Number of successful extensions: 1113
Number of sequences better than 1.0e-10: 7
Number of HSP's gapped: 1112
Number of HSP's successfully gapped: 7
Length of query: 505
Length of database: 17,035,801
Length adjustment: 105
Effective length of query: 400
Effective length of database: 11,553,331
Effective search space: 4621332400
Effective search space used: 4621332400
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 158 (65.5 bits)