Os03g0389700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to M-160-u1_1 (Fragment).
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Os03g0389700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to M-160-u1_1 (Fragment).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 481.75 | 1.03 | 9.1 | -5.89 | 2.44 | 2.87 | -0.451 | -7.16 | -0.716 | 12.4 | 27.6 | 1680 | -- | -- |
| 489.16 | 1.03 | 8.92 | -4.45 | 2.51 | 2.39 | -0.294 | -- | -0.378 | 12.5 | 28.4 | 1748 | -- | -- |
| 482.61 | 1.02 | 9.1 | -5.89 | 2.44 | 2.85 | -- | -7.03 | -0.72 | 12.5 | 27.58 | 1671 | -- | -- |
| 487.97 | 1.03 | 8.93 | -4.44 | 2.44 | 2.14 | -- | -- | -0.456 | 12.5 | 27.94 | 1746 | -- | -- |
| 782.12 | 1.31 | 9.07 | -4.95 | -- | 3.77 | -- | -7.01 | -0.718 | -- | 26.83 | 1650 | -- | -- |
| 633.49 | 1.18 | 8.95 | -3.9 | 2.38 | -- | -0.587 | -- | -0.533 | 12.7 | -- | -- | -- | -- |
| 634.95 | 1.18 | 8.95 | -3.92 | 2.39 | -- | -- | -- | -0.536 | 12.7 | -- | -- | -- | -- |
| 789.13 | 1.31 | 9 | -4.38 | -- | 3.21 | -- | -- | -0.609 | -- | 26.7 | 1700 | -- | -- |
| 981.14 | 1.46 | 8.81 | -- | 2.55 | 1.39 | -- | -- | 0.123 | 12.7 | 30.4 | 1805 | -- | -- |
| 991.23 | 1.47 | 8.99 | -4.01 | -- | -- | -- | -- | -0.578 | -- | -- | -- | -- | -- |
| 1040.22 | 1.51 | 8.85 | -- | 2.45 | -- | -- | -- | -0.0988 | 12.8 | -- | -- | -- | -- |
| 1250.13 | 1.65 | 8.93 | -- | -- | 2.61 | -- | -- | -0.319 | -- | 24.6 | 4 | -- | -- |
| 1414.71 | 1.76 | 8.89 | -- | -- | -- | -- | -- | -0.133 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 473.85 | wind | 9.0 | 43200 | > th | dose dependent | rect. | 20 | 10 |
| 5 | 476.44 | wind | 9.0 | 43200 | > th | dose independent | rect. | 19 | 10 |
| 12 | 478.02 | wind | 9.0 | 43200 | < th | dose independent | rect. | 20 | 10 |
| 13 | 478.08 | wind | 5.0 | 43200 | > th | dose independent | rect. | 6 | 1 |
| 20 | 478.82 | wind | 9.0 | 43200 | > th | dose dependent | rect. | 20 | 5 |
| 21 | 478.87 | wind | 9.0 | 43200 | > th | dose independent | rect. | 19 | 5 |
| 35 | 480.04 | wind | 5.0 | 43200 | < th | dose independent | rect. | 6 | 1 |
| 42 | 480.96 | wind | 5.0 | 43200 | > th | dose independent | rect. | 2 | 14 |
| 45 | 481.44 | wind | 5.0 | 43200 | > th | dose independent | sin | 3 | NA |
| 46 | 481.50 | wind | 5.0 | 43200 | < th | dose independent | rect. | 2 | 14 |
| 47 | 481.55 | wind | 5.0 | 43200 | < th | dose independent | sin | 3 | NA |
| 50 | 481.82 | wind | 9.0 | 43200 | < th | dose independent | rect. | 19 | 5 |
| 52 | 481.89 | wind | 5.0 | 43200 | > th | dose independent | rect. | 19 | 21 |
| 56 | 482.25 | wind | 5.0 | 43200 | < th | dose independent | rect. | 19 | 21 |
| 66 | 483.12 | radiation | 10.0 | 14400 | > th | dose dependent | rect. | 17 | 1 |
| 86 | 483.44 | wind | 3.0 | 43200 | > th | dose dependent | rect. | 3 | 12 |
| 91 | 483.49 | wind | 3.0 | 43200 | > th | dose dependent | sin | 4 | NA |
| 95 | 483.59 | wind | 5.0 | 43200 | > th | dose dependent | rect. | 19 | 21 |
| 105 | 483.88 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 17 | 4 |
| 109 | 484.13 | atmosphere | 1000.0 | 43200 | < th | dose dependent | rect. | 11 | 2 |
| 121 | 484.59 | temperature | 25.0 | 1440 | > th | dose dependent | rect. | 18 | 1 |
| 126 | 484.73 | atmosphere | 1000.0 | 43200 | < th | dose dependent | rect. | 11 | 4 |
| 139 | 485.13 | temperature | 25.0 | 1440 | > th | dose dependent | rect. | 16 | 3 |
| 153 | 485.40 | atmosphere | 1000.0 | 43200 | < th | dose dependent | rect. | 14 | 1 |
| 156 | 485.51 | wind | 5.0 | 43200 | > th | dose dependent | rect. | 6 | 1 |
| 160 | 485.64 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 19 | 2 |
| 161 | 485.65 | wind | 3.0 | 43200 | > th | dose dependent | rect. | 5 | 9 |
| 169 | 485.78 | radiation | 30.0 | 14400 | > th | dose independent | rect. | 16 | 16 |
| 177 | 485.91 | wind | 5.0 | 43200 | > th | dose independent | rect. | 15 | 21 |
| 180 | 485.94 | temperature | 25.0 | 1440 | > th | dose dependent | rect. | 15 | 18 |
| 188 | 486.03 | temperature | 30.0 | 1440 | < th | dose independent | rect. | 15 | 3 |
| 216 | 486.58 | temperature | 30.0 | 1440 | > th | dose independent | rect. | 15 | 3 |
| 222 | 486.74 | wind | 5.0 | 43200 | < th | dose independent | rect. | 15 | 22 |
| 224 | 486.79 | radiation | 30.0 | 14400 | > th | dose independent | rect. | 7 | 1 |
| 261 | 487.21 | temperature | 25.0 | 1440 | > th | dose dependent | rect. | 12 | 21 |
| 276 | 487.42 | temperature | 25.0 | 1440 | > th | dose dependent | rect. | 16 | 8 |
| 278 | 487.45 | temperature | 25.0 | 1440 | > th | dose dependent | rect. | 15 | 10 |
| 305 | 487.77 | wind | 3.0 | 43200 | > th | dose dependent | rect. | 9 | 1 |
| 316 | 487.92 | humidity | 80.0 | 43200 | > th | dose independent | rect. | 23 | 1 |
| 321 | 487.97 | wind | 5.0 | 43200 | < th | dose independent | rect. | 9 | 1 |
| 345 | 488.31 | temperature | 25.0 | 1440 | > th | dose dependent | sin | 15 | NA |
| 352 | 488.45 | wind | 5.0 | 43200 | > th | dose independent | rect. | 9 | 1 |
| 363 | 488.57 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 16 | 2 |
| 366 | 488.62 | temperature | 30.0 | 1440 | < th | dose independent | rect. | 15 | 9 |
| 370 | 488.78 | temperature | 30.0 | 1440 | < th | dose independent | rect. | 15 | 11 |
| 372 | 488.79 | temperature | 30.0 | 1440 | < th | dose independent | rect. | 15 | 14 |
| 376 | 488.81 | humidity | 80.0 | 43200 | < th | dose independent | rect. | 22 | 1 |
| 379 | 488.81 | temperature | 25.0 | 1440 | > th | dose dependent | rect. | 12 | 14 |
| 382 | 488.83 | temperature | 30.0 | 1440 | < th | dose independent | rect. | 15 | 16 |
| 424 | 489.29 | temperature | 30.0 | 1440 | < th | dose independent | rect. | 14 | 23 |
| 441 | 489.42 | temperature | 30.0 | 1440 | < th | dose independent | sin | 18 | NA |
| 457 | 489.51 | temperature | 30.0 | 1440 | < th | dose independent | rect. | 9 | 9 |
| 489 | 489.66 | temperature | 30.0 | 1440 | < th | dose independent | rect. | 9 | 15 |
| 508 | 489.73 | temperature | 30.0 | 1440 | < th | dose independent | rect. | 9 | 20 |
| 512 | 489.74 | temperature | 30.0 | 1440 | < th | dose independent | rect. | 14 | 21 |
| 513 | 489.74 | temperature | 30.0 | 1440 | < th | dose independent | rect. | 9 | 22 |
| 541 | 489.83 | wind | 5.0 | 43200 | > th | dose dependent | rect. | 15 | 22 |
| 643 | 490.47 | temperature | 30.0 | 1440 | < th | dose independent | rect. | 19 | 23 |
| 646 | 490.49 | wind | 5.0 | 43200 | > th | dose independent | rect. | 24 | 23 |
| 650 | 490.53 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 17 | 2 |
| 651 | 490.53 | temperature | 30.0 | 1440 | < th | dose independent | rect. | 12 | 23 |
| 652 | 490.53 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 17 | 2 |
| 653 | 490.54 | temperature | 30.0 | 1440 | < th | dose independent | rect. | 21 | 21 |
| 658 | 490.58 | temperature | 30.0 | 1440 | < th | dose independent | rect. | 6 | 12 |
| 660 | 490.61 | temperature | 30.0 | 1440 | < th | dose independent | rect. | 3 | 15 |
| 663 | 490.62 | temperature | 30.0 | 1440 | < th | dose independent | rect. | 23 | 19 |
| 673 | 490.68 | temperature | 30.0 | 1440 | < th | dose independent | rect. | 6 | 18 |
| 694 | 490.71 | temperature | 30.0 | 1440 | < th | dose independent | rect. | 3 | 21 |
| 700 | 490.72 | temperature | 30.0 | 1440 | < th | dose independent | rect. | 1 | 23 |
| 717 | 490.75 | temperature | 30.0 | 1440 | < th | dose independent | rect. | 6 | 22 |
| 730 | 490.79 | temperature | 30.0 | 1440 | < th | dose independent | no | NA | NA |
| 756 | 490.80 | temperature | 30.0 | 1440 | < th | dose independent | rect. | 23 | 23 |
| 773 | 490.86 | temperature | 25.0 | 4320 | < th | dose independent | rect. | 7 | 1 |
| 804 | 490.92 | temperature | 30.0 | 1440 | > th | dose independent | rect. | 14 | 23 |
| 815 | 490.95 | wind | 5.0 | 43200 | > th | dose independent | no | NA | NA |
| 833 | 491.04 | temperature | 25.0 | 1440 | > th | dose dependent | rect. | 15 | 23 |
| 835 | 491.05 | temperature | 30.0 | 1440 | > th | dose dependent | rect. | 14 | 1 |
| 843 | 491.09 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 17 | 2 |
| 847 | 491.10 | humidity | 70.0 | 14400 | < th | dose dependent | rect. | 18 | 1 |
| 849 | 491.12 | temperature | 25.0 | 1440 | > th | dose dependent | rect. | 6 | 23 |
| 850 | 491.13 | temperature | 25.0 | 1440 | > th | dose dependent | no | NA | NA |
| 851 | 491.13 | temperature | 25.0 | 1440 | > th | dose dependent | rect. | 6 | 21 |
| 852 | 491.13 | temperature | 25.0 | 1440 | > th | dose dependent | rect. | 4 | 22 |
| 862 | 491.16 | temperature | 30.0 | 14400 | > th | dose independent | rect. | 16 | 2 |
| 870 | 491.18 | temperature | 25.0 | 1440 | > th | dose dependent | rect. | 23 | 23 |
| 876 | 491.21 | temperature | 25.0 | 1440 | > th | dose dependent | rect. | 21 | 23 |
| 888 | 491.28 | radiation | 10.0 | 1440 | < th | dose dependent | rect. | 18 | 11 |
| 932 | 491.44 | wind | 9.0 | 43200 | < th | dose dependent | rect. | 8 | 2 |