BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os03g0389700 Os03g0389700|AB122057
(554 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G22410.1 | chr1:7912120-7914742 FORWARD LENGTH=528 826 0.0
AT4G39980.1 | chr4:18539654-18541832 FORWARD LENGTH=526 810 0.0
AT4G33510.1 | chr4:16116496-16118549 FORWARD LENGTH=508 794 0.0
>AT1G22410.1 | chr1:7912120-7914742 FORWARD LENGTH=528
Length = 527
Score = 826 bits (2133), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 387/439 (88%), Positives = 414/439 (94%), Gaps = 1/439 (0%)
Query: 94 RWAVDSWRTKKALQLPEYPNAAELEAVLKTIEAFPPIVFAGEARHLEERLADAAMGRAFL 153
+WA +SWRTKKALQ P+YP+ A LEAVL+TIEAFPPIVFAGEAR LEERL AAMG AFL
Sbjct: 74 KWAPESWRTKKALQQPDYPDLAALEAVLETIEAFPPIVFAGEARLLEERLGQAAMGEAFL 133
Query: 154 LQGGDCAESFKEFNGNNIRDTFRVLLQMSAVLTFGGQMPVIKVGRMAGQFAKPRSEAFEE 213
LQGGDCAESFKEFN NNIRDTFR+LLQM AVL FGGQ+PV+KVGRMAGQFAKPRS++FEE
Sbjct: 134 LQGGDCAESFKEFNANNIRDTFRILLQMGAVLMFGGQVPVVKVGRMAGQFAKPRSDSFEE 193
Query: 214 RDGVKLPSYRGDNINGDAFNEKSRIPDPQRMVRAYAQSAATLNLLRAFATGGYAAMQRVT 273
+DGVKLPSYRGDNINGDAF+ KSRIPDPQRM+RAY QSAATLNLLRAFATGGYAAMQRVT
Sbjct: 194 KDGVKLPSYRGDNINGDAFDSKSRIPDPQRMIRAYCQSAATLNLLRAFATGGYAAMQRVT 253
Query: 274 QWNLDFTQHSEQGDRYRELAHRVDEALGFMSAAGLTVDHPLMTSTDFWTSHECLLLPYEQ 333
QWNLDFT+ SEQGDRYRELA+RVDEALGFM AAGLT+DHP+M +TDFWTSHECLLLPYEQ
Sbjct: 254 QWNLDFTERSEQGDRYRELANRVDEALGFMHAAGLTLDHPIMQTTDFWTSHECLLLPYEQ 313
Query: 334 SLTRQDSTTGHFYDCSAHMLWVGERTRQLDGAHVEFLRGVANPLGIKVSDKMNPTELVKL 393
SLTR DST+G +YDCSAHM+WVGERTRQLDGAHVEFLRGVANPLGIKVSDKM+P ELVKL
Sbjct: 314 SLTRLDSTSGLYYDCSAHMIWVGERTRQLDGAHVEFLRGVANPLGIKVSDKMDPKELVKL 373
Query: 394 IEILNPSNKPGRITIITRMGAENMRVKLPHLIRAVRHAGQIVTWITDPMHGNTIKAPCGL 453
IEILN NKPGRITIITRMGAENMRVKLPHLIR VR AGQIVTW++DPMHGNTIKAPCGL
Sbjct: 374 IEILNADNKPGRITIITRMGAENMRVKLPHLIREVRRAGQIVTWVSDPMHGNTIKAPCGL 433
Query: 454 KTRPFDSI-AEVRAFFDVHDQEGSHPGGVHLEMTGQNVTECIGGSRTVTFDDLGDRYHTH 512
KTRPFD+I AEVRAFFDVH+QEGSHPGG+HLEMTGQNVTECIGGSRTVTFDDLG RYHTH
Sbjct: 434 KTRPFDAILAEVRAFFDVHEQEGSHPGGIHLEMTGQNVTECIGGSRTVTFDDLGSRYHTH 493
Query: 513 CDPRLNASQSLELSFIIAE 531
CDPRLNASQSLELSFIIAE
Sbjct: 494 CDPRLNASQSLELSFIIAE 512
>AT4G39980.1 | chr4:18539654-18541832 FORWARD LENGTH=526
Length = 525
Score = 810 bits (2091), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 374/439 (85%), Positives = 410/439 (93%), Gaps = 1/439 (0%)
Query: 94 RWAVDSWRTKKALQLPEYPNAAELEAVLKTIEAFPPIVFAGEARHLEERLADAAMGRAFL 153
+W +SW+ KKALQLP+YPNA ELE+VLKTIEAFPPIVFAGEAR+LEERLADAA+G+AFL
Sbjct: 74 KWTPESWKLKKALQLPDYPNANELESVLKTIEAFPPIVFAGEARNLEERLADAAVGKAFL 133
Query: 154 LQGGDCAESFKEFNGNNIRDTFRVLLQMSAVLTFGGQMPVIKVGRMAGQFAKPRSEAFEE 213
LQGGDCAESFKEFN NIRDTFRVLLQMS VLTFGGQ+PVIKVGRMAGQFAKPRS+AFEE
Sbjct: 134 LQGGDCAESFKEFNATNIRDTFRVLLQMSIVLTFGGQVPVIKVGRMAGQFAKPRSDAFEE 193
Query: 214 RDGVKLPSYRGDNINGDAFNEKSRIPDPQRMVRAYAQSAATLNLLRAFATGGYAAMQRVT 273
+DGVKLPSY+GDNINGD F+EKSRIPDP RM+RAY QSAATLNLLRAFATGGYAA+QRVT
Sbjct: 194 KDGVKLPSYKGDNINGDTFDEKSRIPDPNRMIRAYTQSAATLNLLRAFATGGYAAIQRVT 253
Query: 274 QWNLDFTQHSEQGDRYRELAHRVDEALGFMSAAGLTVDHPLMTSTDFWTSHECLLLPYEQ 333
QWNLDF + SEQ DRY+ELA+RVDEALGFMSA GL DHPLMT+TDF+TSHECLLLPYEQ
Sbjct: 254 QWNLDFVEQSEQADRYQELANRVDEALGFMSACGLGTDHPLMTTTDFYTSHECLLLPYEQ 313
Query: 334 SLTRQDSTTGHFYDCSAHMLWVGERTRQLDGAHVEFLRGVANPLGIKVSDKMNPTELVKL 393
SLTR DST+G +YDCSAHM+W GERTRQLDGAHVEFLRG+ANPLGIKVS+KM+P ELVKL
Sbjct: 314 SLTRLDSTSGLYYDCSAHMVWCGERTRQLDGAHVEFLRGIANPLGIKVSNKMDPFELVKL 373
Query: 394 IEILNPSNKPGRITIITRMGAENMRVKLPHLIRAVRHAGQIVTWITDPMHGNTIKAPCGL 453
+EILNP+NKPGRIT+I RMGAENMRVKLPHLIRAVR +GQIVTW+ DPMHGNTIKAPCGL
Sbjct: 374 VEILNPNNKPGRITVIVRMGAENMRVKLPHLIRAVRRSGQIVTWVCDPMHGNTIKAPCGL 433
Query: 454 KTRPFDSI-AEVRAFFDVHDQEGSHPGGVHLEMTGQNVTECIGGSRTVTFDDLGDRYHTH 512
KTR FDSI AEVRAF DVH+QEGSH GG+HLEMTGQNVTECIGGSRTVT+DDL RYHTH
Sbjct: 434 KTRAFDSILAEVRAFLDVHEQEGSHAGGIHLEMTGQNVTECIGGSRTVTYDDLSSRYHTH 493
Query: 513 CDPRLNASQSLELSFIIAE 531
CDPRLNASQSLEL+FI+AE
Sbjct: 494 CDPRLNASQSLELAFIVAE 512
>AT4G33510.1 | chr4:16116496-16118549 FORWARD LENGTH=508
Length = 507
Score = 794 bits (2050), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 365/439 (83%), Positives = 410/439 (93%), Gaps = 1/439 (0%)
Query: 94 RWAVDSWRTKKALQLPEYPNAAELEAVLKTIEAFPPIVFAGEARHLEERLADAAMGRAFL 153
+W+++SW++KKALQLP+YP+ ++++VL+T+ +FPPIVFAGEAR LE++L AAMG+AF+
Sbjct: 51 KWSLESWKSKKALQLPDYPDQKDVDSVLQTLSSFPPIVFAGEARKLEDKLGQAAMGQAFM 110
Query: 154 LQGGDCAESFKEFNGNNIRDTFRVLLQMSAVLTFGGQMPVIKVGRMAGQFAKPRSEAFEE 213
LQGGDCAESFKEFN NNIRDTFRVLLQM VL FGGQ+PVIKVGRMAGQFAKPRS+ FEE
Sbjct: 111 LQGGDCAESFKEFNANNIRDTFRVLLQMGVVLMFGGQLPVIKVGRMAGQFAKPRSDPFEE 170
Query: 214 RDGVKLPSYRGDNINGDAFNEKSRIPDPQRMVRAYAQSAATLNLLRAFATGGYAAMQRVT 273
+DGVKLPSYRGDNINGDAF+EKSRIPDP RMVRAY QS ATLNLLRAFATGGYAAMQRV+
Sbjct: 171 KDGVKLPSYRGDNINGDAFDEKSRIPDPHRMVRAYTQSVATLNLLRAFATGGYAAMQRVS 230
Query: 274 QWNLDFTQHSEQGDRYRELAHRVDEALGFMSAAGLTVDHPLMTSTDFWTSHECLLLPYEQ 333
QWNLDFTQHSEQGDRYRELA+RVDEALGFM AAGLT HP+MT+T+FWTSHECLLLPYEQ
Sbjct: 231 QWNLDFTQHSEQGDRYRELANRVDEALGFMGAAGLTSAHPIMTTTEFWTSHECLLLPYEQ 290
Query: 334 SLTRQDSTTGHFYDCSAHMLWVGERTRQLDGAHVEFLRGVANPLGIKVSDKMNPTELVKL 393
+LTR+DST+G +YDCSAHMLWVGERTRQLDGAHVEFLRG+ANPLGIKVSDKM P+ELVKL
Sbjct: 291 ALTREDSTSGLYYDCSAHMLWVGERTRQLDGAHVEFLRGIANPLGIKVSDKMVPSELVKL 350
Query: 394 IEILNPSNKPGRITIITRMGAENMRVKLPHLIRAVRHAGQIVTWITDPMHGNTIKAPCGL 453
IEILNP NKPGRIT+I RMGAENMRVKLP+LIRAVR AGQIVTW++DPMHGNTI AP GL
Sbjct: 351 IEILNPQNKPGRITVIVRMGAENMRVKLPNLIRAVRGAGQIVTWVSDPMHGNTIMAPGGL 410
Query: 454 KTRPFDSI-AEVRAFFDVHDQEGSHPGGVHLEMTGQNVTECIGGSRTVTFDDLGDRYHTH 512
KTR FD+I AE+RAFFDVHDQEGS PGGVHLEMTGQNVTEC+GGSRT+T++DL RYHTH
Sbjct: 411 KTRSFDAIRAELRAFFDVHDQEGSFPGGVHLEMTGQNVTECVGGSRTITYNDLSSRYHTH 470
Query: 513 CDPRLNASQSLELSFIIAE 531
CDPRLNASQSLEL+FIIAE
Sbjct: 471 CDPRLNASQSLELAFIIAE 489
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.319 0.134 0.405
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 10,374,188
Number of extensions: 401606
Number of successful extensions: 767
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 764
Number of HSP's successfully gapped: 3
Length of query: 554
Length of database: 11,106,569
Length adjustment: 104
Effective length of query: 450
Effective length of database: 8,255,305
Effective search space: 3714887250
Effective search space used: 3714887250
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 114 (48.5 bits)