BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os03g0389700 Os03g0389700|AB122057
(554 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os03g0389700 Similar to M-160-u1_1 (Fragment) 981 0.0
Os07g0622200 Similar to M-160-u1_1 (Fragment) 860 0.0
Os08g0484500 Similar to Phospho-2-dehydro-3-deoxyheptonate ... 817 0.0
Os10g0564400 Similar to Phospho-2-dehydro-3-deoxyheptonate ... 720 0.0
Os07g0648500 86 1e-16
Os03g0790100 83 5e-16
Os08g0362600 83 6e-16
>Os03g0389700 Similar to M-160-u1_1 (Fragment)
Length = 554
Score = 981 bits (2535), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 479/554 (86%), Positives = 479/554 (86%)
Query: 1 MSLATSSSMAGGXXXXXXXXXXXXXXXXXXMKXXXXXXXXXXXXEPSKNPPVGVPSAAKT 60
MSLATSSSMAGG MK EPSKNPPVGVPSAAKT
Sbjct: 1 MSLATSSSMAGGAAVVPRSATATTASAFVTMKRRATAVRAVHAAEPSKNPPVGVPSAAKT 60
Query: 61 SSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRWAVDSWRTKKALQLPEYPNAAELEAV 120
SS RWAVDSWRTKKALQLPEYPNAAELEAV
Sbjct: 61 SSPSVAAPEKAPVAAAPAPVAPAPAATKQVAPARWAVDSWRTKKALQLPEYPNAAELEAV 120
Query: 121 LKTIEAFPPIVFAGEARHLEERLADAAMGRAFLLQGGDCAESFKEFNGNNIRDTFRVLLQ 180
LKTIEAFPPIVFAGEARHLEERLADAAMGRAFLLQGGDCAESFKEFNGNNIRDTFRVLLQ
Sbjct: 121 LKTIEAFPPIVFAGEARHLEERLADAAMGRAFLLQGGDCAESFKEFNGNNIRDTFRVLLQ 180
Query: 181 MSAVLTFGGQMPVIKVGRMAGQFAKPRSEAFEERDGVKLPSYRGDNINGDAFNEKSRIPD 240
MSAVLTFGGQMPVIKVGRMAGQFAKPRSEAFEERDGVKLPSYRGDNINGDAFNEKSRIPD
Sbjct: 181 MSAVLTFGGQMPVIKVGRMAGQFAKPRSEAFEERDGVKLPSYRGDNINGDAFNEKSRIPD 240
Query: 241 PQRMVRAYAQSAATLNLLRAFATGGYAAMQRVTQWNLDFTQHSEQGDRYRELAHRVDEAL 300
PQRMVRAYAQSAATLNLLRAFATGGYAAMQRVTQWNLDFTQHSEQGDRYRELAHRVDEAL
Sbjct: 241 PQRMVRAYAQSAATLNLLRAFATGGYAAMQRVTQWNLDFTQHSEQGDRYRELAHRVDEAL 300
Query: 301 GFMSAAGLTVDHPLMTSTDFWTSHECLLLPYEQSLTRQDSTTGHFYDCSAHMLWVGERTR 360
GFMSAAGLTVDHPLMTSTDFWTSHECLLLPYEQSLTRQDSTTGHFYDCSAHMLWVGERTR
Sbjct: 301 GFMSAAGLTVDHPLMTSTDFWTSHECLLLPYEQSLTRQDSTTGHFYDCSAHMLWVGERTR 360
Query: 361 QLDGAHVEFLRGVANPLGIKVSDKMNPTELVKLIEILNPSNKPGRITIITRMGAENMRVK 420
QLDGAHVEFLRGVANPLGIKVSDKMNPTELVKLIEILNPSNKPGRITIITRMGAENMRVK
Sbjct: 361 QLDGAHVEFLRGVANPLGIKVSDKMNPTELVKLIEILNPSNKPGRITIITRMGAENMRVK 420
Query: 421 LPHLIRAVRHAGQIVTWITDPMHGNTIKAPCGLKTRPFDSIAEVRAFFDVHDQEGSHPGG 480
LPHLIRAVRHAGQIVTWITDPMHGNTIKAPCGLKTRPFDSIAEVRAFFDVHDQEGSHPGG
Sbjct: 421 LPHLIRAVRHAGQIVTWITDPMHGNTIKAPCGLKTRPFDSIAEVRAFFDVHDQEGSHPGG 480
Query: 481 VHLEMTGQNVTECIGGSRTVTFDDLGDRYHTHCDPRLNASQSLELSFIIAEXXXXXXXXX 540
VHLEMTGQNVTECIGGSRTVTFDDLGDRYHTHCDPRLNASQSLELSFIIAE
Sbjct: 481 VHLEMTGQNVTECIGGSRTVTFDDLGDRYHTHCDPRLNASQSLELSFIIAERLRRKRIRS 540
Query: 541 XXXXXMLPLPPFGV 554
MLPLPPFGV
Sbjct: 541 SKLNNMLPLPPFGV 554
>Os07g0622200 Similar to M-160-u1_1 (Fragment)
Length = 537
Score = 860 bits (2221), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 404/461 (87%), Positives = 428/461 (92%), Gaps = 2/461 (0%)
Query: 94 RWAVDSWRTKKALQLPEYPNAAELEAVLKTIEAFPPIVFAGEARHLEERLADAAMGRAFL 153
+W VDSW+ KKALQLPEYP+ EL++VLKTIE FPP+VFAGEARHLEERLADAAMGRAF+
Sbjct: 77 KWTVDSWKAKKALQLPEYPSQEELDSVLKTIETFPPVVFAGEARHLEERLADAAMGRAFV 136
Query: 154 LQGGDCAESFKEFNGNNIRDTFRVLLQMSAVLTFGGQMPVIKVGRMAGQFAKPRSEAFEE 213
LQGGDCAESFKEFN NNIRDTFR+LLQM AVL FGGQMPV+KVGRMAGQFAKPRS++FEE
Sbjct: 137 LQGGDCAESFKEFNANNIRDTFRILLQMGAVLMFGGQMPVVKVGRMAGQFAKPRSDSFEE 196
Query: 214 RDGVKLPSYRGDNINGDAFNEKSRIPDPQRMVRAYAQSAATLNLLRAFATGGYAAMQRVT 273
RDGVKLPSYRGDNINGD F+EKSR+PDPQRM+RAYAQS ATLNLLRAFATGGYAAMQRVT
Sbjct: 197 RDGVKLPSYRGDNINGDTFDEKSRVPDPQRMIRAYAQSVATLNLLRAFATGGYAAMQRVT 256
Query: 274 QWNLDFTQHSEQGDRYRELAHRVDEALGFMSAAGLTVDHPLMTSTDFWTSHECLLLPYEQ 333
QWNLDF HSEQGDRYRELAHRVDEALGFM+AAGLTVDHP+MT+TDFWTSHECLLLPYEQ
Sbjct: 257 QWNLDFMDHSEQGDRYRELAHRVDEALGFMTAAGLTVDHPIMTTTDFWTSHECLLLPYEQ 316
Query: 334 SLTRQDSTTGHFYDCSAHMLWVGERTRQLDGAHVEFLRGVANPLGIKVSDKMNPTELVKL 393
SLTR+DST+G FYDCSAHMLWVGERTRQLDGAHVEFLRGVANPLGIKVSDKMNP +LVKL
Sbjct: 317 SLTREDSTSGLFYDCSAHMLWVGERTRQLDGAHVEFLRGVANPLGIKVSDKMNPRDLVKL 376
Query: 394 IEILNPSNKPGRITIITRMGAENMRVKLPHLIRAVRHAGQIVTWITDPMHGNTIKAPCGL 453
IEILNPSNKPGRITIITRMGAENMRVKLPHLIRAVR++GQIVTWITDPMHGNTIKAPCGL
Sbjct: 377 IEILNPSNKPGRITIITRMGAENMRVKLPHLIRAVRNSGQIVTWITDPMHGNTIKAPCGL 436
Query: 454 KTRPFDSI-AEVRAFFDVHDQEGSHPGGVHLEMTGQNVTECIGGSRTVTFDDLGDRYHTH 512
KTRPFDSI AEVRAFFDVHDQEGSHPGG+HLEMTGQNVTECIGGSRTVTFDDL DRYHTH
Sbjct: 437 KTRPFDSILAEVRAFFDVHDQEGSHPGGIHLEMTGQNVTECIGGSRTVTFDDLSDRYHTH 496
Query: 513 CDPRLNASQSLELSFIIAEXXXXXXXXXXXXXXMLPLPPFG 553
CDPRLNASQSLEL+FIIAE LPLPP
Sbjct: 497 CDPRLNASQSLELAFIIAERLRRRRMRSGVNSN-LPLPPLA 536
>Os08g0484500 Similar to Phospho-2-dehydro-3-deoxyheptonate aldolase 1,
chloroplast precursor (EC 2.5.1.54)
(Phospho-2-keto-3-deoxyheptonate aldolase 1) (DAHP
synthetase 1) (3-deoxy-D-arabino-heptulosonate
7-phosphate synthase 1)
Length = 505
Score = 817 bits (2110), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 381/439 (86%), Positives = 415/439 (94%), Gaps = 1/439 (0%)
Query: 94 RWAVDSWRTKKALQLPEYPNAAELEAVLKTIEAFPPIVFAGEARHLEERLADAAMGRAFL 153
+W++ SWR+ ALQ PEYP+ AEL+ VL+T+EAFPPIVFAGEAR LEERLA+AA+GRAFL
Sbjct: 41 KWSLGSWRSLTALQQPEYPDKAELDEVLRTVEAFPPIVFAGEARKLEERLAEAAVGRAFL 100
Query: 154 LQGGDCAESFKEFNGNNIRDTFRVLLQMSAVLTFGGQMPVIKVGRMAGQFAKPRSEAFEE 213
LQGGDCAESFKEFN NNIRDTFRVLLQMS VL FGGQMP+IKVGRMAGQFAKPRS+ FEE
Sbjct: 101 LQGGDCAESFKEFNANNIRDTFRVLLQMSVVLMFGGQMPIIKVGRMAGQFAKPRSDGFEE 160
Query: 214 RDGVKLPSYRGDNINGDAFNEKSRIPDPQRMVRAYAQSAATLNLLRAFATGGYAAMQRVT 273
RDGVKLPSYRGDNINGD+F+EKSR+PDP RM+RAY+QSAATLNLLRAFATGGYAAMQRVT
Sbjct: 161 RDGVKLPSYRGDNINGDSFDEKSRLPDPHRMIRAYSQSAATLNLLRAFATGGYAAMQRVT 220
Query: 274 QWNLDFTQHSEQGDRYRELAHRVDEALGFMSAAGLTVDHPLMTSTDFWTSHECLLLPYEQ 333
QWNLDFT+HSEQGDRY ELAHRVDEALGFM+AAGLT+DHP+MT+T+FWTSHECLLLPYEQ
Sbjct: 221 QWNLDFTEHSEQGDRYMELAHRVDEALGFMAAAGLTMDHPIMTTTEFWTSHECLLLPYEQ 280
Query: 334 SLTRQDSTTGHFYDCSAHMLWVGERTRQLDGAHVEFLRGVANPLGIKVSDKMNPTELVKL 393
+LTR+DST+G +YDCSAH LWVGERTRQLD AHVEFLRG+ANPLGIKVSDKM+P ELVKL
Sbjct: 281 ALTREDSTSGLYYDCSAHFLWVGERTRQLDCAHVEFLRGIANPLGIKVSDKMDPKELVKL 340
Query: 394 IEILNPSNKPGRITIITRMGAENMRVKLPHLIRAVRHAGQIVTWITDPMHGNTIKAPCGL 453
I+ILNP NKPGRITIITRMG ENMRVKLPHLIRAVR AGQIVTW+TDPMHGNT+KAPCGL
Sbjct: 341 IDILNPQNKPGRITIITRMGPENMRVKLPHLIRAVRGAGQIVTWVTDPMHGNTMKAPCGL 400
Query: 454 KTRPFDSI-AEVRAFFDVHDQEGSHPGGVHLEMTGQNVTECIGGSRTVTFDDLGDRYHTH 512
KTR FD I AEVRAFFDVH+QEGSHPGGVHLEMTGQNVTECIGGSRTVTFDDLG RYHTH
Sbjct: 401 KTRSFDRILAEVRAFFDVHEQEGSHPGGVHLEMTGQNVTECIGGSRTVTFDDLGSRYHTH 460
Query: 513 CDPRLNASQSLELSFIIAE 531
CDPRLNASQSLEL+FIIAE
Sbjct: 461 CDPRLNASQSLELAFIIAE 479
>Os10g0564400 Similar to Phospho-2-dehydro-3-deoxyheptonate aldolase 2,
chloroplast precursor (EC 2.5.1.54)
(Phospho-2-keto-3-deoxyheptonate aldolase 2) (DAHP
synthetase 2) (3-deoxy-D-arabino-heptulosonate
7-phosphate synthase 2)
Length = 508
Score = 720 bits (1858), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 334/438 (76%), Positives = 378/438 (86%), Gaps = 1/438 (0%)
Query: 95 WAVDSWRTKKALQLPEYPNAAELEAVLKTIEAFPPIVFAGEARHLEERLADAAMGRAFLL 154
W SWR + A Q+PEYP+AA LE + + +FPP+VFAGEAR LEERL DAAMGRAFLL
Sbjct: 52 WEPGSWRARPARQIPEYPDAAALEGAERELASFPPLVFAGEARKLEERLGDAAMGRAFLL 111
Query: 155 QGGDCAESFKEFNGNNIRDTFRVLLQMSAVLTFGGQMPVIKVGRMAGQFAKPRSEAFEER 214
QGGDCAESFKEF NNIRDTFR++LQM+ VLTFGGQMP IKVGRMAGQFAKPRS E
Sbjct: 112 QGGDCAESFKEFAANNIRDTFRLMLQMAVVLTFGGQMPTIKVGRMAGQFAKPRSNPTETI 171
Query: 215 DGVKLPSYRGDNINGDAFNEKSRIPDPQRMVRAYAQSAATLNLLRAFATGGYAAMQRVTQ 274
DGV LPSYRGD IN D F+EKSR PDP+R++RAY+QSA+TLNLLR FA GGYA +QRVTQ
Sbjct: 172 DGVTLPSYRGDIINSDGFDEKSRAPDPERLIRAYSQSASTLNLLRGFAHGGYADLQRVTQ 231
Query: 275 WNLDFTQHSEQGDRYRELAHRVDEALGFMSAAGLTVDHPLMTSTDFWTSHECLLLPYEQS 334
WNLDF + S QGDRY EL+ RV +A+GFM AAGLT HP+MT+ +FWTSHECL LPYEQ+
Sbjct: 232 WNLDFLRDSTQGDRYMELSERVHDAIGFMVAAGLTPQHPIMTTAEFWTSHECLHLPYEQA 291
Query: 335 LTRQDSTTGHFYDCSAHMLWVGERTRQLDGAHVEFLRGVANPLGIKVSDKMNPTELVKLI 394
LTR DS +G +YDCSAHMLWVGERTRQLDGAHVEFLRG++NPLG+KVSDK+ P+ELVKL
Sbjct: 292 LTRVDSISGLYYDCSAHMLWVGERTRQLDGAHVEFLRGISNPLGVKVSDKLEPSELVKLC 351
Query: 395 EILNPSNKPGRITIITRMGAENMRVKLPHLIRAVRHAGQIVTWITDPMHGNTIKAPCGLK 454
EILNP NKPGR+TIITRMGAEN RVKLPH+IRAVR AG IVTW++DPMHGNTI APCGLK
Sbjct: 352 EILNPHNKPGRLTIITRMGAENTRVKLPHMIRAVRQAGLIVTWVSDPMHGNTISAPCGLK 411
Query: 455 TRPFDSI-AEVRAFFDVHDQEGSHPGGVHLEMTGQNVTECIGGSRTVTFDDLGDRYHTHC 513
TR FD+I E+RAFFDVH+QEGS+PGG+HLEMTGQNVTECIGGS+TVT DDL RY THC
Sbjct: 412 TRSFDAIRCELRAFFDVHEQEGSYPGGIHLEMTGQNVTECIGGSKTVTLDDLSSRYRTHC 471
Query: 514 DPRLNASQSLELSFIIAE 531
DPRLNASQSLEL+F IA+
Sbjct: 472 DPRLNASQSLELAFAIAD 489
>Os07g0648500
Length = 213
Score = 85.5 bits (210), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 40/66 (60%), Positives = 48/66 (72%)
Query: 415 ENMRVKLPHLIRAVRHAGQIVTWITDPMHGNTIKAPCGLKTRPFDSIAEVRAFFDVHDQE 474
EN+RVKLPHLIRAV A QIVTW+TDPMHGNT+KAPCGLKTR F + + + D++
Sbjct: 109 ENIRVKLPHLIRAVHVAVQIVTWVTDPMHGNTMKAPCGLKTRSFATFQSLFSMADMNFGS 168
Query: 475 GSHPGG 480
G G
Sbjct: 169 GGEAYG 174
>Os03g0790100
Length = 229
Score = 83.2 bits (204), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 37/44 (84%), Positives = 40/44 (90%)
Query: 415 ENMRVKLPHLIRAVRHAGQIVTWITDPMHGNTIKAPCGLKTRPF 458
EN+RVKLPHLIRAV A QIVTW+TDPMHGNT+KAPCGLKTR F
Sbjct: 94 ENIRVKLPHLIRAVHVAVQIVTWVTDPMHGNTMKAPCGLKTRSF 137
>Os08g0362600
Length = 306
Score = 82.8 bits (203), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 37/44 (84%), Positives = 40/44 (90%)
Query: 415 ENMRVKLPHLIRAVRHAGQIVTWITDPMHGNTIKAPCGLKTRPF 458
EN+RVKLPHLIRAV A QIVTW+TDPMHGNT+KAPCGLKTR F
Sbjct: 250 ENIRVKLPHLIRAVHVAVQIVTWVTDPMHGNTMKAPCGLKTRSF 293
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.319 0.134 0.405
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 16,930,756
Number of extensions: 662999
Number of successful extensions: 1173
Number of sequences better than 1.0e-10: 7
Number of HSP's gapped: 1168
Number of HSP's successfully gapped: 7
Length of query: 554
Length of database: 17,035,801
Length adjustment: 106
Effective length of query: 448
Effective length of database: 11,501,117
Effective search space: 5152500416
Effective search space used: 5152500416
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 159 (65.9 bits)