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Os10g0564400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Phospho-2-dehydro-3-deoxyheptonate aldolase 2, chloroplast precursor (EC 2.5.1.54) (Phospho-2-keto-3-deoxyheptonate aldolase 2) (DAHP synthetase 2) (3-deoxy-D-arabino-heptulosonate 7-phosphate synthase 2).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose independent, type of G = sin)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 183.26 | 0.636 | 6.65 | 1.84 | 1.56 | -1.72 | -0.249 | 1.3 | 0.0242 | 13.2 | 21.19 | 748 | 23.2 | -- |
| 185.19 | 0.634 | 6.63 | 2.11 | 1.54 | -1.7 | 0.428 | -- | 0.0868 | 13.2 | 21.4 | 749 | 22.9 | -- |
| 183 | 0.63 | 6.65 | 1.88 | 1.58 | -1.69 | -- | 1.11 | 0.0326 | 13.2 | 21.4 | 748 | 23.1 | -- |
| 185.86 | 0.635 | 6.64 | 2.1 | 1.57 | -1.8 | -- | -- | 0.076 | 13.2 | 21.4 | 746 | 22.7 | -- |
| 232.92 | 0.715 | 6.58 | 2.53 | -- | -1.12 | -- | -0.733 | 0.35 | -- | 26.3 | 4 | 4.01 | -- |
| 248.8 | 0.739 | 6.55 | 2.54 | 1.17 | -- | 0.877 | -- | 0.422 | 13.8 | -- | -- | -- | -- |
| 251.78 | 0.743 | 6.55 | 2.57 | 1.17 | -- | -- | -- | 0.427 | 13.9 | -- | -- | -- | -- |
| 234.43 | 0.713 | 6.58 | 2.51 | -- | -1.13 | -- | -- | 0.34 | -- | 26.4 | 4 | 3.73 | -- |
| 204.68 | 0.666 | 6.74 | -- | 1.2 | -2.43 | -- | -- | -0.437 | 13.9 | 17.8 | 47520 | 1.75 | -- |
| 334.39 | 0.854 | 6.56 | 2.52 | -- | -- | -- | -- | 0.4 | -- | -- | -- | -- | -- |
| 425.69 | 0.965 | 6.62 | -- | 1.12 | -- | -- | -- | 0.141 | 13.8 | -- | -- | -- | -- |
| 292.37 | 0.796 | 6.75 | -- | -- | -2.36 | -- | -- | -0.429 | -- | 17.89 | 47520 | 0.744 | -- |
| 501.98 | 1.05 | 6.63 | -- | -- | -- | -- | -- | 0.12 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 176.92 | temperature | 10 | 720 | > th | dose dependent | rect. | 3 | 7 |
| 5 | 180.11 | temperature | 30 | 720 | < th | dose dependent | rect. | 24 | 11 |
| 9 | 180.38 | temperature | 30 | 720 | < th | dose dependent | rect. | 1 | 8 |
| 49 | 183.26 | temperature | 25 | 720 | < th | dose dependent | rect. | 5 | 2 |
| 73 | 184.51 | temperature | 10 | 720 | > th | dose dependent | sin | 6 | NA |
| 75 | 184.62 | temperature | 30 | 720 | < th | dose dependent | sin | 6 | NA |
| 77 | 184.81 | temperature | 10 | 720 | > th | dose dependent | rect. | 22 | 17 |
| 81 | 184.99 | temperature | 20 | 720 | > th | dose independent | rect. | 3 | 6 |
| 101 | 186.04 | temperature | 20 | 720 | < th | dose independent | rect. | 5 | 2 |
| 140 | 187.75 | temperature | 20 | 720 | < th | dose independent | rect. | 3 | 4 |
| 320 | 192.52 | temperature | 20 | 720 | < th | dose independent | rect. | 1 | 12 |
| 349 | 193.14 | temperature | 20 | 720 | > th | dose independent | rect. | 3 | 12 |
| 542 | 196.49 | radiation | 1 | 43200 | < th | dose independent | rect. | 16 | 2 |
| 548 | 196.59 | radiation | 1 | 43200 | > th | dose independent | rect. | 16 | 2 |
| 564 | 196.96 | temperature | 20 | 720 | < th | dose independent | sin | 5 | NA |
| 599 | 197.33 | temperature | 20 | 720 | > th | dose independent | sin | 5 | NA |
| 612 | 197.54 | radiation | 1 | 43200 | < th | dose independent | rect. | 15 | 15 |
| 631 | 197.73 | radiation | 1 | 43200 | > th | dose independent | rect. | 15 | 15 |
| 659 | 198.01 | radiation | 1 | 43200 | < th | dose dependent | rect. | 16 | 2 |
| 669 | 198.10 | radiation | 1 | 43200 | < th | dose independent | rect. | 10 | 20 |
| 673 | 198.13 | radiation | 1 | 43200 | < th | dose independent | rect. | 3 | 15 |
| 685 | 198.15 | radiation | 1 | 43200 | < th | dose independent | rect. | 10 | 8 |
| 686 | 198.16 | radiation | 1 | 43200 | > th | dose independent | rect. | 4 | 14 |
| 700 | 198.20 | radiation | 1 | 43200 | > th | dose independent | rect. | 10 | 8 |
| 726 | 198.36 | radiation | 1 | 43200 | > th | dose independent | rect. | 10 | 20 |
| 738 | 198.43 | temperature | 10 | 43200 | > th | dose dependent | rect. | 6 | 1 |
| 739 | 198.43 | temperature | 30 | 43200 | < th | dose dependent | rect. | 6 | 1 |
| 754 | 198.53 | radiation | 1 | 43200 | < th | dose independent | sin | 12 | NA |
| 755 | 198.54 | radiation | 1 | 43200 | < th | dose independent | rect. | 14 | 22 |
| 763 | 198.58 | radiation | 1 | 43200 | < th | dose independent | rect. | 3 | 3 |
| 767 | 198.59 | radiation | 1 | 43200 | < th | dose independent | rect. | 1 | 5 |
| 776 | 198.61 | radiation | 1 | 43200 | > th | dose independent | rect. | 14 | 22 |
| 782 | 198.64 | radiation | 1 | 43200 | < th | dose independent | rect. | 21 | 9 |
| 795 | 198.67 | radiation | 1 | 43200 | > th | dose independent | sin | 12 | NA |
| 851 | 198.84 | radiation | 1 | 43200 | > th | dose independent | rect. | 4 | 2 |
| 905 | 198.92 | radiation | 1 | 43200 | < th | dose independent | no | NA | NA |
| 961 | 198.96 | radiation | 1 | 43200 | < th | dose independent | rect. | 14 | 8 |
| 962 | 198.96 | radiation | 1 | 43200 | < th | dose independent | rect. | 14 | 10 |
| 966 | 198.96 | temperature | 10 | 270 | > th | dose dependent | rect. | 3 | 20 |
| 976 | 198.98 | radiation | 1 | 43200 | > th | dose independent | rect. | 4 | 8 |
| 995 | 199.00 | radiation | 1 | 43200 | < th | dose independent | rect. | 3 | 9 |
