BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os07g0622200 Os07g0622200|AK105687
(537 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G22410.1 | chr1:7912120-7914742 FORWARD LENGTH=528 835 0.0
AT4G39980.1 | chr4:18539654-18541832 FORWARD LENGTH=526 831 0.0
AT4G33510.1 | chr4:16116496-16118549 FORWARD LENGTH=508 825 0.0
>AT1G22410.1 | chr1:7912120-7914742 FORWARD LENGTH=528
Length = 527
Score = 835 bits (2156), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 391/449 (87%), Positives = 417/449 (92%), Gaps = 4/449 (0%)
Query: 71 KPVGL----GKWTVDSWKAKKALQLPEYPSQEELDSVLKTIETFPPVVFAGEARHLEERL 126
KPVG+ GKW +SW+ KKALQ P+YP L++VL+TIE FPP+VFAGEAR LEERL
Sbjct: 64 KPVGVNVGKGKWAPESWRTKKALQQPDYPDLAALEAVLETIEAFPPIVFAGEARLLEERL 123
Query: 127 ADAAMGRAFVLQGGDCAESFKEFNANNIRDTFRILLQMGAVLMFGGQMPVVKVGRMAGQF 186
AAMG AF+LQGGDCAESFKEFNANNIRDTFRILLQMGAVLMFGGQ+PVVKVGRMAGQF
Sbjct: 124 GQAAMGEAFLLQGGDCAESFKEFNANNIRDTFRILLQMGAVLMFGGQVPVVKVGRMAGQF 183
Query: 187 AKPRSDSFEERDGVKLPSYRGDNINGDTFDEKSRVPDPQRMIRAYAQSVATLNLLRAFAT 246
AKPRSDSFEE+DGVKLPSYRGDNINGD FD KSR+PDPQRMIRAY QS ATLNLLRAFAT
Sbjct: 184 AKPRSDSFEEKDGVKLPSYRGDNINGDAFDSKSRIPDPQRMIRAYCQSAATLNLLRAFAT 243
Query: 247 GGYAAMQRVTQWNLDFMDHSEQGDRYRELAHRVDEALGFMTAAGLTVDHPIMTTTDFWTS 306
GGYAAMQRVTQWNLDF + SEQGDRYRELA+RVDEALGFM AAGLT+DHPIM TTDFWTS
Sbjct: 244 GGYAAMQRVTQWNLDFTERSEQGDRYRELANRVDEALGFMHAAGLTLDHPIMQTTDFWTS 303
Query: 307 HECLLLPYEQSLTREDSTSGLFYDCSAHMLWVGERTRQLDGAHVEFLRGVANPLGIKVSD 366
HECLLLPYEQSLTR DSTSGL+YDCSAHM+WVGERTRQLDGAHVEFLRGVANPLGIKVSD
Sbjct: 304 HECLLLPYEQSLTRLDSTSGLYYDCSAHMIWVGERTRQLDGAHVEFLRGVANPLGIKVSD 363
Query: 367 KMNPRDLVKLIEILNPSNKPGRITIITRMGAENMRVKLPHLIRAVRNSGQIVTWITDPMH 426
KM+P++LVKLIEILN NKPGRITIITRMGAENMRVKLPHLIR VR +GQIVTW++DPMH
Sbjct: 364 KMDPKELVKLIEILNADNKPGRITIITRMGAENMRVKLPHLIREVRRAGQIVTWVSDPMH 423
Query: 427 GNTIKAPCGLKTRPFDSILAEVRAFFDVHDQEGSHPGGIHLEMTGQNVTECIGGSRTVTF 486
GNTIKAPCGLKTRPFD+ILAEVRAFFDVH+QEGSHPGGIHLEMTGQNVTECIGGSRTVTF
Sbjct: 424 GNTIKAPCGLKTRPFDAILAEVRAFFDVHEQEGSHPGGIHLEMTGQNVTECIGGSRTVTF 483
Query: 487 DDLSDRYHTHCDPRLNASQSLELAFIIAE 515
DDL RYHTHCDPRLNASQSLEL+FIIAE
Sbjct: 484 DDLGSRYHTHCDPRLNASQSLELSFIIAE 512
>AT4G39980.1 | chr4:18539654-18541832 FORWARD LENGTH=526
Length = 525
Score = 831 bits (2147), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 388/484 (80%), Positives = 432/484 (89%), Gaps = 11/484 (2%)
Query: 32 PMRRRTVSAVHAADPAKSNGPVQAAAKASSPSTVAAPEKKPVGLGKWTVDSWKAKKALQL 91
P V+AVHAA+PA++ V+ + +SS G KWT +SWK KKALQL
Sbjct: 40 PKSVNLVTAVHAAEPARNAVSVKESVASSSS-----------GALKWTPESWKLKKALQL 88
Query: 92 PEYPSQEELDSVLKTIETFPPVVFAGEARHLEERLADAAMGRAFVLQGGDCAESFKEFNA 151
P+YP+ EL+SVLKTIE FPP+VFAGEAR+LEERLADAA+G+AF+LQGGDCAESFKEFNA
Sbjct: 89 PDYPNANELESVLKTIEAFPPIVFAGEARNLEERLADAAVGKAFLLQGGDCAESFKEFNA 148
Query: 152 NNIRDTFRILLQMGAVLMFGGQMPVVKVGRMAGQFAKPRSDSFEERDGVKLPSYRGDNIN 211
NIRDTFR+LLQM VL FGGQ+PV+KVGRMAGQFAKPRSD+FEE+DGVKLPSY+GDNIN
Sbjct: 149 TNIRDTFRVLLQMSIVLTFGGQVPVIKVGRMAGQFAKPRSDAFEEKDGVKLPSYKGDNIN 208
Query: 212 GDTFDEKSRVPDPQRMIRAYAQSVATLNLLRAFATGGYAAMQRVTQWNLDFMDHSEQGDR 271
GDTFDEKSR+PDP RMIRAY QS ATLNLLRAFATGGYAA+QRVTQWNLDF++ SEQ DR
Sbjct: 209 GDTFDEKSRIPDPNRMIRAYTQSAATLNLLRAFATGGYAAIQRVTQWNLDFVEQSEQADR 268
Query: 272 YRELAHRVDEALGFMTAAGLTVDHPIMTTTDFWTSHECLLLPYEQSLTREDSTSGLFYDC 331
Y+ELA+RVDEALGFM+A GL DHP+MTTTDF+TSHECLLLPYEQSLTR DSTSGL+YDC
Sbjct: 269 YQELANRVDEALGFMSACGLGTDHPLMTTTDFYTSHECLLLPYEQSLTRLDSTSGLYYDC 328
Query: 332 SAHMLWVGERTRQLDGAHVEFLRGVANPLGIKVSDKMNPRDLVKLIEILNPSNKPGRITI 391
SAHM+W GERTRQLDGAHVEFLRG+ANPLGIKVS+KM+P +LVKL+EILNP+NKPGRIT+
Sbjct: 329 SAHMVWCGERTRQLDGAHVEFLRGIANPLGIKVSNKMDPFELVKLVEILNPNNKPGRITV 388
Query: 392 ITRMGAENMRVKLPHLIRAVRNSGQIVTWITDPMHGNTIKAPCGLKTRPFDSILAEVRAF 451
I RMGAENMRVKLPHLIRAVR SGQIVTW+ DPMHGNTIKAPCGLKTR FDSILAEVRAF
Sbjct: 389 IVRMGAENMRVKLPHLIRAVRRSGQIVTWVCDPMHGNTIKAPCGLKTRAFDSILAEVRAF 448
Query: 452 FDVHDQEGSHPGGIHLEMTGQNVTECIGGSRTVTFDDLSDRYHTHCDPRLNASQSLELAF 511
DVH+QEGSH GGIHLEMTGQNVTECIGGSRTVT+DDLS RYHTHCDPRLNASQSLELAF
Sbjct: 449 LDVHEQEGSHAGGIHLEMTGQNVTECIGGSRTVTYDDLSSRYHTHCDPRLNASQSLELAF 508
Query: 512 IIAE 515
I+AE
Sbjct: 509 IVAE 512
>AT4G33510.1 | chr4:16116496-16118549 FORWARD LENGTH=508
Length = 507
Score = 825 bits (2132), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 393/516 (76%), Positives = 438/516 (84%), Gaps = 30/516 (5%)
Query: 24 PRLAATFLPMR---RRTVS-----AVHAADPAKSNGPVQAAAKASSPSTVAAPEKKPVGL 75
P +FLP R RR +S AVH+ DP KS A+ K
Sbjct: 9 PLTTKSFLPYRHAPRRPISFSPVFAVHSTDPKKSTQSASASVK----------------- 51
Query: 76 GKWTVDSWKAKKALQLPEYPSQEELDSVLKTIETFPPVVFAGEARHLEERLADAAMGRAF 135
W+++SWK+KKALQLP+YP Q+++DSVL+T+ +FPP+VFAGEAR LE++L AAMG+AF
Sbjct: 52 --WSLESWKSKKALQLPDYPDQKDVDSVLQTLSSFPPIVFAGEARKLEDKLGQAAMGQAF 109
Query: 136 VLQGGDCAESFKEFNANNIRDTFRILLQMGAVLMFGGQMPVVKVGRMAGQFAKPRSDSFE 195
+LQGGDCAESFKEFNANNIRDTFR+LLQMG VLMFGGQ+PV+KVGRMAGQFAKPRSD FE
Sbjct: 110 MLQGGDCAESFKEFNANNIRDTFRVLLQMGVVLMFGGQLPVIKVGRMAGQFAKPRSDPFE 169
Query: 196 ERDGVKLPSYRGDNINGDTFDEKSRVPDPQRMIRAYAQSVATLNLLRAFATGGYAAMQRV 255
E+DGVKLPSYRGDNINGD FDEKSR+PDP RM+RAY QSVATLNLLRAFATGGYAAMQRV
Sbjct: 170 EKDGVKLPSYRGDNINGDAFDEKSRIPDPHRMVRAYTQSVATLNLLRAFATGGYAAMQRV 229
Query: 256 TQWNLDFMDHSEQGDRYRELAHRVDEALGFMTAAGLTVDHPIMTTTDFWTSHECLLLPYE 315
+QWNLDF HSEQGDRYRELA+RVDEALGFM AAGLT HPIMTTT+FWTSHECLLLPYE
Sbjct: 230 SQWNLDFTQHSEQGDRYRELANRVDEALGFMGAAGLTSAHPIMTTTEFWTSHECLLLPYE 289
Query: 316 QSLTREDSTSGLFYDCSAHMLWVGERTRQLDGAHVEFLRGVANPLGIKVSDKMNPRDLVK 375
Q+LTREDSTSGL+YDCSAHMLWVGERTRQLDGAHVEFLRG+ANPLGIKVSDKM P +LVK
Sbjct: 290 QALTREDSTSGLYYDCSAHMLWVGERTRQLDGAHVEFLRGIANPLGIKVSDKMVPSELVK 349
Query: 376 LIEILNPSNKPGRITIITRMGAENMRVKLPHLIRAVRNSGQIVTWITDPMHGNTIKAPCG 435
LIEILNP NKPGRIT+I RMGAENMRVKLP+LIRAVR +GQIVTW++DPMHGNTI AP G
Sbjct: 350 LIEILNPQNKPGRITVIVRMGAENMRVKLPNLIRAVRGAGQIVTWVSDPMHGNTIMAPGG 409
Query: 436 LKTRPFDSILAEVRAFFDVHDQEGSHPGGIHLEMTGQNVTECIGGSRTVTFDDLSDRYHT 495
LKTR FD+I AE+RAFFDVHDQEGS PGG+HLEMTGQNVTEC+GGSRT+T++DLS RYHT
Sbjct: 410 LKTRSFDAIRAELRAFFDVHDQEGSFPGGVHLEMTGQNVTECVGGSRTITYNDLSSRYHT 469
Query: 496 HCDPRLNASQSLELAFIIAEXXXXXXXXSGVNSNLP 531
HCDPRLNASQSLELAFIIAE SG NLP
Sbjct: 470 HCDPRLNASQSLELAFIIAERLRKRRLGSG---NLP 502
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.319 0.134 0.402
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 11,190,695
Number of extensions: 467176
Number of successful extensions: 1127
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 1123
Number of HSP's successfully gapped: 3
Length of query: 537
Length of database: 11,106,569
Length adjustment: 103
Effective length of query: 434
Effective length of database: 8,282,721
Effective search space: 3594700914
Effective search space used: 3594700914
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 114 (48.5 bits)