BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os10g0517500 Os10g0517500|AK100465
(464 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os10g0517500 Cys/Met metabolism pyridoxal-phosphate-depende... 764 0.0
Os06g0175800 Similar to Cystathionine beta-lyase, chloropla... 129 6e-30
Os06g0176900 126 3e-29
Os10g0399200 Similar to Cystathionine gamma-synthase isofor... 122 8e-28
Os10g0399700 Similar to Cystathionine gamma-synthase isofor... 119 5e-27
Os10g0398800 116 3e-26
Os03g0376100 Cys/Met metabolism pyridoxal-phosphate-depende... 115 5e-26
Os06g0242600 105 6e-23
>Os10g0517500 Cys/Met metabolism pyridoxal-phosphate-dependent enzymes family
protein
Length = 464
Score = 764 bits (1974), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 388/464 (83%), Positives = 388/464 (83%)
Query: 1 MAHVMAASELVTATIKRPFQXXXXXXXXXXXXXXXKPKXXXXXXXXXXXXXXXXHEFGEH 60
MAHVMAASELVTATIKRPFQ KPK HEFGEH
Sbjct: 1 MAHVMAASELVTATIKRPFQNDDDNSSNGNGNADGKPKARRREADPAAALAAARHEFGEH 60
Query: 61 GGVNMSIEASATFTVMEPDTMRRLFSGELGPERGDLYIYSRHFNPTVLALGRQMAALEGT 120
GGVNMSIEASATFTVMEPDTMRRLFSGELGPERGDLYIYSRHFNPTVLALGRQMAALEGT
Sbjct: 61 GGVNMSIEASATFTVMEPDTMRRLFSGELGPERGDLYIYSRHFNPTVLALGRQMAALEGT 120
Query: 121 EAAYCTASGMSAISSVLMQLVGAGGHVVASRCLYGGTHALLSRFLPRASGVRATFXXXXX 180
EAAYCTASGMSAISSVLMQLVGAGGHVVASRCLYGGTHALLSRFLPRASGVRATF
Sbjct: 121 EAAYCTASGMSAISSVLMQLVGAGGHVVASRCLYGGTHALLSRFLPRASGVRATFVDADD 180
Query: 181 XXXXXXXXXPGETRVVYVETMSNPTLAVADIPMLARVAHDAGAKLVVDNTFTPMVVSPAR 240
PGETRVVYVETMSNPTLAVADIPMLARVAHDAGAKLVVDNTFTPMVVSPAR
Sbjct: 181 EAAVRAAVRPGETRVVYVETMSNPTLAVADIPMLARVAHDAGAKLVVDNTFTPMVVSPAR 240
Query: 241 LGADVVVHSVSKFXXXXXXXXXXXXXXXXSLVNAMMDLQEGALMLLGPTMNAKVAFELSE 300
LGADVVVHSVSKF SLVNAMMDLQEGALMLLGPTMNAKVAFELSE
Sbjct: 241 LGADVVVHSVSKFISGGADIIAGAICGPASLVNAMMDLQEGALMLLGPTMNAKVAFELSE 300
Query: 301 RLPHLPLRMQEHSRRAAEYASRMRRLGLRVAYPGLPDHPHHARLLAIANPGYGAGGMLCV 360
RLPHLPLRMQEHSRRAAEYASRMRRLGLRVAYPGLPDHPHHARLLAIANPGYGAGGMLCV
Sbjct: 301 RLPHLPLRMQEHSRRAAEYASRMRRLGLRVAYPGLPDHPHHARLLAIANPGYGAGGMLCV 360
Query: 361 DMGTEDRANRLMHHLQNTTRFGLMAVSLGYYETLMXXXXXXXXXEMPPEDRARAGISPGL 420
DMGTEDRANRLMHHLQNTTRFGLMAVSLGYYETLM EMPPEDRARAGISPGL
Sbjct: 361 DMGTEDRANRLMHHLQNTTRFGLMAVSLGYYETLMSCSGSSTSSEMPPEDRARAGISPGL 420
Query: 421 VRMSVGYNGTLEQRWAQFERALSLMXXXXXXHPDRDAAAKYCKV 464
VRMSVGYNGTLEQRWAQFERALSLM HPDRDAAAKYCKV
Sbjct: 421 VRMSVGYNGTLEQRWAQFERALSLMQQQQQQHPDRDAAAKYCKV 464
>Os06g0175800 Similar to Cystathionine beta-lyase, chloroplast precursor (EC
4.4.1.8) (CBL) (Beta-cystathionase) (Cysteine lyase)
Length = 475
Score = 129 bits (323), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 107/349 (30%), Positives = 168/349 (48%), Gaps = 48/349 (13%)
Query: 97 YIYSRHFNPTVLALGRQMAALEGTEAAYCTASGMSAISSVLMQLVGAGGHVVASRCLYGG 156
Y Y+R NPT L MA LE + A+C SGM+A+++V L+ +G +VA +YGG
Sbjct: 136 YDYTRSGNPTRDVLQSLMAKLEKADQAFCFTSGMAALAAV-THLLKSGQEIVAGEDIYGG 194
Query: 157 THALLSRFLPRASGVRATFXXXXXXXXXXXXXXPGETRVVYVETMSNPTLAVADIPMLAR 216
+ LLS+ PR G+ P T++V++E+ +NP L + DI +A
Sbjct: 195 SDRLLSQVAPR-HGIVVKRIDTTKISEVTSAIGP-LTKLVWLESPTNPRLQITDIKKIAE 252
Query: 217 VAHDAGAKLVVDNTF-TPMVVSPARLGADVVVHSVSKFXXXXXXXXXXXXXXXXSLVNAM 275
+AH GA ++VDN+ +P++ P LGAD+V+HS +KF +
Sbjct: 253 IAHYHGALVLVDNSIMSPVLSRPLELGADIVMHSATKF------------------IAGH 294
Query: 276 MDLQEGALMLLGPTMNAKVAF----ELSERLPH---LPLR-----------MQEHSRRAA 317
DL G L + G ++ ++AF E S P L LR Q ++++ A
Sbjct: 295 SDLMAGILAVKGESLAKEIAFLQNAEGSGLAPFDCWLCLRGIKTMALRVEKQQANAQKIA 354
Query: 318 EYASRMRRLGLRVAYPGLPDHPHHARLLAIANPGYGAGGMLCVDMGTEDRANRLMHHLQN 377
E+ + R+ +V Y GLPDHP + + A GAG +L G+ L H+
Sbjct: 355 EFLASHPRVK-KVNYAGLPDHPGRSLHYSQAK---GAGSVLSFLTGSL----ALSKHVVE 406
Query: 378 TTRFGLMAVSLGYYETLMXXXXXXXXXEMPPEDRARAGISPGLVRMSVG 426
TT++ + VS G ++L+ +P R G++ LVR+SVG
Sbjct: 407 TTKYFNVTVSFGSVKSLISLPCFMSHASIPSAVREERGLTDDLVRISVG 455
>Os06g0176900
Length = 390
Score = 126 bits (317), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 109/350 (31%), Positives = 168/350 (48%), Gaps = 49/350 (14%)
Query: 97 YIYSRHFNPTVLALGRQMAALEGTEAAYCTASGMSAISSVLMQLVGAGGHVVASRCLYGG 156
Y Y+R NPT L MA LE + A+C SGM+A+++V L+ +G +VA +YGG
Sbjct: 50 YDYTRSGNPTRDVLQSLMAKLEKADQAFCFTSGMAALAAV-THLLKSGQEIVAGEDIYGG 108
Query: 157 THALLSRFLPRASGVRATFXXXXXXXXXXXXXXPGETRVVYVETMSNPTLAVADIPMLAR 216
+ LLS+ PR G+ P T++V++E+ +NP L + DI +A
Sbjct: 109 SDRLLSQVAPR-HGIVVKRIDTTKISEVTSAIGP-LTKLVWLESPTNPRLQITDIKKIAE 166
Query: 217 VAHDAGAKLVVDNTF-TPMVVSPARLGADVVVHSVSKFXXXXXXXXXXXXXXXXSLVNAM 275
+AH GA ++VDN+ +P++ P LGAD+V+HS +KF +
Sbjct: 167 IAHYHGALVLVDNSIMSPVLSRPLELGADIVMHSATKF------------------IAGH 208
Query: 276 MDLQEGALMLLGPTMNAK-VAF----ELSERLPH---LPLR-----------MQEHSRRA 316
DL G L + G + AK +AF E S P L LR Q ++++
Sbjct: 209 SDLMAGILAVKGESSLAKEIAFLQNAEGSGLAPFDCWLCLRGIKTMALRVEKQQANAQKI 268
Query: 317 AEYASRMRRLGLRVAYPGLPDHPHHARLLAIANPGYGAGGMLCVDMGTEDRANRLMHHLQ 376
AE+ + R+ +V Y GLPDHP + + A GAG +L G+ L H+
Sbjct: 269 AEFLASHPRVK-KVNYAGLPDHPGRSLHYSQAK---GAGSVLSFLTGSL----ALSKHVV 320
Query: 377 NTTRFGLMAVSLGYYETLMXXXXXXXXXEMPPEDRARAGISPGLVRMSVG 426
TT++ + VS G ++L+ +P R G++ LVR+SVG
Sbjct: 321 ETTKYFNVTVSFGSVKSLISLPCFMSHASIPSAVREERGLTDDLVRISVG 370
>Os10g0399200 Similar to Cystathionine gamma-synthase isoform 2 (EC 4.2.99.9)
Length = 472
Score = 122 bits (305), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 98/337 (29%), Positives = 155/337 (45%), Gaps = 21/337 (6%)
Query: 97 YIYSRHFNPTVLALGRQMAALEGTEAAYCTASGMSAISSVLMQLVGAGGHVVASRCLYGG 156
+ Y R+ NPTV L +++ALE EA T+SGM+AI + L+ LV GGHVV + Y
Sbjct: 132 FEYGRYGNPTVKVLEEKISALERAEATLVTSSGMNAIVATLLALVPPGGHVVVTADCYSE 191
Query: 157 THALLSRFLPRASGVRATFXX-XXXXXXXXXXXXPGETRVVYVETMSNPTLAVADIPMLA 215
A + L + G+ +TF E + Y ++M+NP L V D+ +A
Sbjct: 192 ARAFIHDKLSKM-GITSTFVDLDDDMEALESVLDEDEVTMFYADSMTNPHLKVVDVARVA 250
Query: 216 RVAHDAGAKLVVDNTF-TPMVVSPARLGADVVVHSVSKFXXXXXXXXXXXXXXXXSLVNA 274
+ H GA + +D+T +P+ P LGADVV+HS +K+ +L++
Sbjct: 251 ELCHRRGALVCIDSTLASPINQKPLALGADVVLHSATKYIAGHHDVIAGCVSGSEALISR 310
Query: 275 MMDLQEGALMLLGPTMNAKVAFELSERLPHLPLRMQEHSRRAAEYASRMRRLGL--RVAY 332
+ LG ++ A+ + L L LR++ +R A A + + RV Y
Sbjct: 311 IRAWHHD----LGGAISPNAAYMIIRGLKTLALRVEAQNRTALRMARLLEKHPKIERVYY 366
Query: 333 PGLPDHPHH---ARLLAIANPGYGAGGMLCVDMGTEDRANRLMHHLQNTTRFGLMAVSLG 389
PGL P H R +A GAGG++ ++ ++ R + + L+A SLG
Sbjct: 367 PGLESSPWHGVATRQMA------GAGGVVSFEVASDMRG---VMRFVDALELPLIATSLG 417
Query: 390 YYETLMXXXXXXXXXEMPPEDRARAGISPGLVRMSVG 426
E+L+ E++A+ GI VR S G
Sbjct: 418 GCESLVQQPAVMSYWGKSEEEKAKNGIKDNFVRFSFG 454
>Os10g0399700 Similar to Cystathionine gamma-synthase isoform 2 (EC 4.2.99.9)
Length = 486
Score = 119 bits (298), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 98/337 (29%), Positives = 154/337 (45%), Gaps = 21/337 (6%)
Query: 97 YIYSRHFNPTVLALGRQMAALEGTEAAYCTASGMSAISSVLMQLVGAGGHVVASRCLYGG 156
+ Y R+ NPTV L +++ALE EA T+SGM+AI + L+ LV GGHVVA+ Y
Sbjct: 146 FEYGRYGNPTVKVLEEKISALERAEATLVTSSGMNAIVATLLALVPPGGHVVATADCYSE 205
Query: 157 THALLSRFLPRASGVRATFXX-XXXXXXXXXXXXPGETRVVYVETMSNPTLAVADIPMLA 215
A + L G+ +TF E + Y ++M+NP L V D+ +A
Sbjct: 206 ARAFIRDKLSNM-GITSTFVDLDDDMEALECVLDESEVTMFYADSMTNPHLKVVDVTRVA 264
Query: 216 RVAHDAGAKLVVDNTF-TPMVVSPARLGADVVVHSVSKFXXXXXXXXXXXXXXXXSLVNA 274
+ H GA + +D+T +P+ P LGADVV+HS +K+ +L++
Sbjct: 265 ELCHRRGALVCIDSTLASPINQKPLALGADVVLHSATKYIAGHHDVIAGCVSGSEALISR 324
Query: 275 MMDLQEGALMLLGPTMNAKVAFELSERLPHLPLRMQEHSRRAAEYASRMRR--LGLRVAY 332
+ LG ++ A+ + L + LR++ +R A A + + RV Y
Sbjct: 325 IRAWHHD----LGGAISPNAAYMIIRGLKTIALRVEAQNRTALRMARLLEKHPKIERVYY 380
Query: 333 PGLPDHPHH---ARLLAIANPGYGAGGMLCVDMGTEDRANRLMHHLQNTTRFGLMAVSLG 389
PGL H R +A GAGG++ D+ ++ R + + L+A SLG
Sbjct: 381 PGLESSLWHGVATRQMA------GAGGVVSFDVASDLRG---VMRFVDALELPLIATSLG 431
Query: 390 YYETLMXXXXXXXXXEMPPEDRARAGISPGLVRMSVG 426
E+L+ E++A+ GI VR S G
Sbjct: 432 GCESLVQQPAVMSYWGKSEEEKAKNGIKDNFVRFSFG 468
>Os10g0398800
Length = 433
Score = 116 bits (291), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 97/307 (31%), Positives = 149/307 (48%), Gaps = 23/307 (7%)
Query: 97 YIYSRHFNPTVLALGRQMAALEGTEAAYCTASGMSAISSVLMQLVGAGGHVVASRCLYGG 156
+ Y R+ NPTV L +++ALE EA T+SGM+AI + L+ LV GGHVVA+ Y
Sbjct: 133 FEYGRYGNPTVKVLEEKISALERAEATLVTSSGMNAIVATLLALVPPGGHVVATADCYSE 192
Query: 157 THALLSRFLPRASGVRATFXX-XXXXXXXXXXXXPGETRVVYVETMSNPTLAVADIPMLA 215
A + L G+ +TF GE + Y ++M+NP L V D+ +A
Sbjct: 193 ARAFIRDKLSNM-GITSTFVDLDDDMEALESVLDEGEVTMFYADSMTNPHLKVVDVTRVA 251
Query: 216 RVAHDAGAKLVVDNTF-TPMVVSPARLGADVVVHSVSKFXXXXXXXXXXXXXXXXSLVNA 274
+ H GA + +D+T +P+ P LGADVV+HS +K+ +LV+
Sbjct: 252 ELCHRRGALVCIDSTLASPINQKPLALGADVVLHSATKYIAGHHDVIAGCVSGSEALVSR 311
Query: 275 MMDLQEGALMLLGPTMNAKVAFELSERLPHLPLRMQEHSRRAAEYASRMRRLGL--RVAY 332
+ LG ++ A+ + L L LR+Q +R A A + + RV Y
Sbjct: 312 IRTWHHD----LGGAISPNAAYMIIRGLKTLALRVQAQNRTALRMAQLLEKHPKIERVYY 367
Query: 333 PGLPDHPHHA---RLLAIANPGYGAGGMLCVDMGTEDR-ANRLMHHLQNTTRFGLMAVSL 388
PGL P H R +A GAGG++ +++ ++ R A R + L+ L+A SL
Sbjct: 368 PGLESSPWHGVATRQMA------GAGGVVGLEVASDMRGAMRFVDALE----LPLIATSL 417
Query: 389 GYYETLM 395
G E+L+
Sbjct: 418 GGCESLV 424
>Os03g0376100 Cys/Met metabolism pyridoxal-phosphate-dependent enzymes family
protein
Length = 360
Score = 115 bits (289), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 95/333 (28%), Positives = 150/333 (45%), Gaps = 19/333 (5%)
Query: 99 YSRHFNPTVLALGRQMAALEGTEAAYCTASGMSAISSVLMQLVGAGGHVVASRCLYGGTH 158
Y R+ NPT AL ++M+ALE E+ ASGM A ++L LV AGGHVV + Y T
Sbjct: 24 YGRYGNPTTEALEKKMSALEKAESTVFVASGMYASVAMLSALVPAGGHVVTTTDCYRKTR 83
Query: 159 ALLSRFLPRASGVRATFXXXXXXXXXXXXXXPGETRVVYVETMSNPTLAVADIPMLARVA 218
+ LP+ G+ T + + ET +NP L DI +++++
Sbjct: 84 IYMETELPK-RGITMTVIRPADMDALQNALDNNNVSLFFTETPTNPFLRCIDIDLVSKMC 142
Query: 219 HDAGAKLVVDNTF-TPMVVSPARLGADVVVHSVSKFXXXXXXXXXXXXXXXXSLVNAMMD 277
H GA L +D+TF +P+ LGAD+V+HS +K+ LV+ +
Sbjct: 143 HSKGALLCIDSTFASPINQKALTLGADLVIHSATKYIAGHNDVIGGCISGRDELVSKVRI 202
Query: 278 LQEGALMLLGPTMNAKVAFELSERLPHLPLRMQEHSR---RAAEYASRMRRLGLRVAYPG 334
++G +N A+ + + L LR+Q + R A++ ++ RV YPG
Sbjct: 203 YHH----VVGGVLNPNAAYLILRGMKTLHLRVQCQNNTAMRMAQFLEEHPKIA-RVYYPG 257
Query: 335 LPDHPHHARLLAIANPGY-GAGGMLCVDMGTEDRANRLMHHLQNTTRFGLMAVSLGYYET 393
LP HP H IA G GG++ ++ + A R ++ + A S G E+
Sbjct: 258 LPSHPEH----HIAKSQMTGFGGVISFEVAGDFDATR---RFIDSVKIPYHAPSFGGCES 310
Query: 394 LMXXXXXXXXXEMPPEDRARAGISPGLVRMSVG 426
++ + E R GI L+R S+G
Sbjct: 311 IIDQPAIMSYWD-SKEQREIYGIKDNLIRFSIG 342
>Os06g0242600
Length = 380
Score = 105 bits (263), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 92/334 (27%), Positives = 142/334 (42%), Gaps = 52/334 (15%)
Query: 97 YIYSRHFNPTVLALGRQMAALEGTEAAYCTASGMSAISSVLMQLVGAGGHVVASRCLYGG 156
+ Y+R+ NPTV L +++A+E EA T+SGM+AI + L+ +V GGHVVA+ Y
Sbjct: 77 FEYARYGNPTVEVLEDKISAMEKAEATIVTSSGMNAIVATLLAVVPPGGHVVATTDCYSE 136
Query: 157 THALLSRFLPRASGVRATFXXXXXXXXXXXXXXPGETRVVYVETMSNPTLAVADIPMLAR 216
A + L + G+R TF G + Y ++++NP L D+ +A
Sbjct: 137 ARAFIRDRLSKM-GIRTTFVDLDDMEALQSVLDQGNVTMFYADSLTNPHLKCVDVRRVAE 195
Query: 217 VAHDAGAKLVVDNTF-TPMVVSPARLGADVVVHSVSKFXXXXXXXXXXXXXXXXSLVNAM 275
+ H GA + +D+T +P+ P LGADVV+HS
Sbjct: 196 LCHQRGALVCIDSTLASPINQKPLTLGADVVLHS-------------------------- 229
Query: 276 MDLQEGALMLLGPTMNAKVAFELSERLPHLPLRMQEHSRRAAEYASRMRR--LGLRVAYP 333
Q A M++ L + LR++ +R A A + R RV YP
Sbjct: 230 -HHQNAAYMII-------------RGLKTMALRVEAQNRTALRVARLLERHPKVERVNYP 275
Query: 334 GLPDHPHHARLLAIANPGYGAGGMLCVDMGTEDR-ANRLMHHLQNTTRFGLMAVSLGYYE 392
L P H GAGG++ ++ ++ R A R + L+ +A SLG E
Sbjct: 276 WLESSPWHG---VARKQMTGAGGVISFEVASDMRGAMRFVDALE----LPFIATSLGGCE 328
Query: 393 TLMXXXXXXXXXEMPPEDRARAGISPGLVRMSVG 426
+L+ ++ GI LVR S G
Sbjct: 329 SLVQQPAIMSYWGKSEAEKTENGIKDNLVRFSFG 362
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.322 0.134 0.395
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 12,834,453
Number of extensions: 466625
Number of successful extensions: 1066
Number of sequences better than 1.0e-10: 8
Number of HSP's gapped: 1043
Number of HSP's successfully gapped: 8
Length of query: 464
Length of database: 17,035,801
Length adjustment: 104
Effective length of query: 360
Effective length of database: 11,605,545
Effective search space: 4177996200
Effective search space used: 4177996200
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 158 (65.5 bits)