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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os10g0399200

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Cystathionine gamma-synthase isoform 2 (EC 4.2.99.9).


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.1 (0.011) R2 : 0.0245
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.0784 (0.0232) R2dN8 : 0.0317 R2N8 : 0.0245
σ : 0.207
deviance : 19.71
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
18.02 0.199 3.01 0.84 0.0668 -0.593 0.197 4.84 -0.0176 12 28.96 1741 -- --
19.02 0.203 3.1 0.075 0.0605 -0.0527 0.181 -- -0.0803 12.2 33.9 5333 -- --
18.18 0.199 3.01 0.843 0.0659 -0.603 -- 4.92 -0.0254 11.5 29.08 1747 -- --
19.1 0.204 3.1 0.0884 0.059 -0.063 -- -- -0.0797 11.6 33.9 1948 -- --
18.45 0.2 3.01 0.844 -- -0.616 -- 4.95 -0.0283 -- 29.11 1748 -- --
19.12 0.205 3.1 0.0602 0.073 -- 0.184 -- -0.0712 11.1 -- -- -- --
19.26 0.206 3.1 0.0672 0.0738 -- -- -- -0.0708 10.5 -- -- -- --
19.19 0.204 3.09 0.11 -- -0.139 -- -- -0.0461 -- -0.6142 2235 -- --
19.24 0.204 3.1 -- 0.0706 -0.0555 -- -- -0.0886 10.3 33.91 1944 -- --
19.59 0.207 3.1 0.0659 -- -- -- -- -0.0711 -- -- -- -- --
19.38 0.206 3.1 -- 0.0734 -- -- -- -0.0783 10.4 -- -- -- --
19.5 0.206 3.1 -- -- -0.0951 -- -- -0.0634 -- 3.65 2211 -- --
19.71 0.207 3.1 -- -- -- -- -- -0.0784 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 17.84 humidity 90.0 1440 > th dose dependent rect. 10 4
2 17.87 wind 5.0 14400 < th dose independent rect. 11 1
3 17.87 humidity 90.0 1440 > th dose independent rect. 11 3
5 17.88 humidity 80.0 14400 < th dose dependent rect. 24 9
6 17.89 humidity 90.0 1440 > th dose dependent rect. 15 1
9 17.91 wind 7.0 14400 < th dose independent rect. 9 1
13 17.93 precipitation 0.1 1440 < th dose independent rect. 15 1
14 17.93 precipitation 0.1 1440 < th dose dependent rect. 15 1
15 17.94 wind 7.0 14400 < th dose dependent rect. 10 2
16 17.95 wind 5.0 14400 > th dose independent rect. 11 1
18 17.96 atmosphere 1000.0 90 < th dose independent rect. 6 20
21 17.97 precipitation 0.1 1440 > th dose independent rect. 15 1
23 17.97 precipitation 0.1 1440 > th dose dependent rect. 15 1
24 17.97 wind 1.0 14400 > th dose dependent rect. 10 2
26 17.98 temperature 30.0 1440 > th dose independent rect. 14 21
27 17.98 temperature 30.0 1440 < th dose independent rect. 14 21
37 17.99 wind 7.0 10 > th dose dependent rect. 9 3
56 18.01 humidity 90.0 1440 < th dose independent rect. 10 4
57 18.01 wind 5.0 14400 < th dose independent rect. 9 6
58 18.01 temperature 15.0 1440 > th dose independent rect. 8 16
59 18.01 temperature 15.0 90 > th dose independent rect. 5 22
60 18.01 atmosphere 1000.0 30 > th dose independent rect. 21 23
62 18.02 wind 3.0 720 < th dose independent rect. 2 3
70 18.03 wind 7.0 14400 > th dose independent rect. 9 1
72 18.03 temperature 15.0 1440 > th dose independent rect. 8 19
74 18.03 temperature 15.0 270 > th dose independent rect. 3 23
77 18.03 wind 7.0 90 > th dose dependent rect. 9 2
85 18.04 wind 5.0 14400 > th dose independent rect. 9 6
89 18.04 precipitation 0.1 1440 > th dose dependent rect. 5 2
101 18.05 atmosphere 1015.0 1440 < th dose independent rect. 3 5
115 18.06 precipitation 0.1 1440 > th dose independent rect. 5 2
117 18.06 atmosphere 1010.0 10 < th dose independent rect. 10 10
121 18.06 wind 9.0 90 > th dose dependent rect. 22 13
139 18.08 temperature 15.0 1440 > th dose independent rect. 8 3
145 18.08 humidity 80.0 90 < th dose dependent rect. 24 3
148 18.08 temperature 10.0 30 > th dose dependent rect. 21 23
149 18.09 humidity 80.0 90 < th dose independent rect. 2 1
152 18.09 atmosphere 1000.0 30 < th dose independent rect. 16 2
153 18.09 precipitation 0.1 1440 < th dose independent rect. 5 2
161 18.09 humidity 80.0 90 < th dose independent rect. 24 5
162 18.09 temperature 15.0 1440 > th dose independent rect. 21 7
166 18.09 atmosphere 1000.0 90 < th dose independent rect. 23 19
173 18.09 wind 7.0 10 > th dose dependent rect. 11 1
174 18.09 humidity 80.0 90 < th dose dependent rect. 2 1
178 18.09 precipitation 0.1 1440 < th dose dependent rect. 5 2
186 18.10 humidity 90.0 10 < th dose independent rect. 3 1
198 18.10 temperature 15.0 270 > th dose independent rect. 8 23
202 18.10 humidity 90.0 10 < th dose dependent rect. 3 1
223 18.11 temperature 30.0 1440 < th dose independent rect. 8 9
224 18.11 temperature 30.0 1440 < th dose independent rect. 4 13
230 18.11 atmosphere 1000.0 90 < th dose independent rect. 15 19
231 18.11 temperature 30.0 1440 < th dose independent rect. 21 20
236 18.11 atmosphere 1000.0 270 < th dose independent rect. 21 21
267 18.12 temperature 15.0 720 > th dose independent rect. 5 12
293 18.12 temperature 30.0 1440 < th dose independent rect. 8 21
311 18.12 atmosphere 1000.0 10 < th dose dependent rect. 17 1
323 18.13 temperature 30.0 1440 < th dose independent sin 1 NA
326 18.13 temperature 30.0 1440 < th dose independent no NA NA
327 18.13 wind 9.0 10 > th dose independent rect. 11 1
328 18.13 wind 7.0 90 > th dose independent rect. 9 2
331 18.13 wind 7.0 14400 < th dose independent rect. 6 4
334 18.13 temperature 30.0 1440 > th dose independent rect. 14 5
344 18.13 temperature 15.0 1440 > th dose independent rect. 18 10
353 18.13 atmosphere 1010.0 90 < th dose independent rect. 3 12
360 18.13 precipitation 0.1 720 > th dose independent rect. 4 13
430 18.13 temperature 30.0 1440 > th dose independent rect. 18 22
463 18.14 temperature 30.0 1440 < th dose independent sin 12 NA
464 18.14 temperature 30.0 1440 < th dose independent sin 22 NA
469 18.14 temperature 30.0 1440 > th dose independent rect. 15 2
475 18.14 temperature 30.0 1440 < th dose independent rect. 14 5
480 18.14 temperature 30.0 1440 > th dose independent rect. 8 9
527 18.14 temperature 20.0 10 < th dose dependent sin 6 NA
535 18.15 temperature 30.0 1440 > th dose independent sin 12 NA
537 18.15 temperature 30.0 1440 < th dose independent sin 20 NA
541 18.15 humidity 50.0 4320 > th dose independent rect. 14 1
546 18.15 temperature 15.0 1440 > th dose independent rect. 8 5
550 18.15 temperature 30.0 1440 > th dose independent rect. 9 7
567 18.15 precipitation 0.1 14400 > th dose independent rect. 23 11
596 18.15 temperature 30.0 1440 > th dose dependent rect. 15 1
606 18.16 temperature 30.0 1440 > th dose independent no NA NA
608 18.16 temperature 30.0 1440 < th dose independent sin 18 NA
612 18.16 temperature 30.0 1440 < th dose independent rect. 15 2
633 18.16 temperature 15.0 1440 > th dose independent rect. 8 11
637 18.16 precipitation 0.1 14400 < th dose independent rect. 23 11
654 18.16 temperature 15.0 1440 > th dose independent rect. 8 14
717 18.16 atmosphere 1000.0 10 < th dose independent rect. 15 20
751 18.16 atmosphere 1000.0 270 < th dose independent rect. 12 22
793 18.16 precipitation 0.1 14400 < th dose dependent rect. 23 11
796 18.17 temperature 30.0 1440 > th dose independent sin 21 NA
831 18.17 precipitation 0.1 1440 < th dose independent rect. 5 9
833 18.17 temperature 15.0 720 > th dose independent rect. 6 10
849 18.17 wind 5.0 14400 > th dose independent rect. 24 17
850 18.17 wind 5.0 14400 < th dose independent rect. 24 17
854 18.17 precipitation 0.1 720 > th dose independent rect. 1 18
874 18.17 atmosphere 1015.0 4320 > th dose dependent rect. 11 1
879 18.17 precipitation 0.1 1440 < th dose dependent rect. 5 9
892 18.18 precipitation 0.1 720 > th dose independent sin 2 NA
905 18.18 atmosphere 1015.0 1440 < th dose independent rect. 24 8
908 18.18 precipitation 0.1 1440 > th dose independent rect. 5 9
914 18.18 atmosphere 1010.0 270 < th dose independent rect. 8 11
915 18.18 atmosphere 1000.0 90 < th dose independent rect. 15 11
918 18.18 wind 9.0 90 > th dose independent rect. 22 13
921 18.18 precipitation 0.1 720 > th dose independent rect. 1 16
949 18.18 precipitation 0.1 1440 > th dose dependent rect. 5 8
952 18.18 precipitation 0.1 14400 > th dose dependent rect. 23 11
953 18.18 precipitation 0.1 720 > th dose dependent rect. 4 13
959 18.19 atmosphere 1015.0 1440 < th dose independent rect. 3 3
987 18.19 wind 5.0 14400 < th dose independent rect. 2 15
995 18.19 temperature 15.0 1440 > th dose independent rect. 10 18