Os03g0376100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Cys/Met metabolism pyridoxal-phosphate-dependent enzymes family protein.
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Os03g0376100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Cys/Met metabolism pyridoxal-phosphate-dependent enzymes family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 32.79 | 0.269 | 13.1 | -0.663 | 0.544 | 0.779 | 0.686 | -0.0403 | -0.405 | 11 | 25.07 | 88 | -- | -- |
| 32.79 | 0.267 | 13.1 | -0.669 | 0.545 | 0.783 | 0.696 | -- | -0.406 | 11 | 25.05 | 87 | -- | -- |
| 34.3 | 0.275 | 13.1 | -0.573 | 0.561 | 0.699 | -- | -0.573 | -0.395 | 10.7 | 25.05 | 76 | -- | -- |
| 34.78 | 0.275 | 13.1 | -0.646 | 0.542 | 0.768 | -- | -- | -0.412 | 10.8 | 24.9 | 85 | -- | -- |
| 44.7 | 0.311 | 13.1 | -0.614 | -- | 0.823 | -- | 0.0209 | -0.393 | -- | 29.22 | 753 | -- | -- |
| 41.68 | 0.303 | 13.1 | -0.854 | 0.458 | -- | 0.639 | -- | -0.559 | 10.3 | -- | -- | -- | -- |
| 43.21 | 0.308 | 13.1 | -0.831 | 0.46 | -- | -- | -- | -0.559 | 9.91 | -- | -- | -- | -- |
| 44.7 | 0.311 | 13.1 | -0.608 | -- | 0.82 | -- | -- | -0.392 | -- | 29.23 | 753 | -- | -- |
| 44.83 | 0.312 | 13.1 | -- | 0.531 | 0.98 | -- | -- | -0.283 | 11.1 | 24.96 | 137 | -- | -- |
| 55.92 | 0.349 | 13.2 | -0.836 | -- | -- | -- | -- | -0.559 | -- | -- | -- | -- | -- |
| 61.4 | 0.367 | 13.1 | -- | 0.463 | -- | -- | -- | -0.466 | 10 | -- | -- | -- | -- |
| 53.28 | 0.34 | 13.1 | -- | -- | 1.06 | -- | -- | -0.28 | -- | 29.1 | 809 | -- | -- |
| 74.35 | 0.402 | 13.1 | -- | -- | -- | -- | -- | -0.466 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 30.55 | temperature | 30 | 270 | < th | dose dependent | rect. | 16 | 15 |
| 3 | 30.76 | temperature | 15 | 270 | > th | dose dependent | rect. | 17 | 11 |
| 12 | 31.18 | temperature | 25 | 90 | < th | dose dependent | sin | 14 | NA |
| 14 | 31.21 | temperature | 25 | 10 | < th | dose dependent | sin | 14 | NA |
| 17 | 31.22 | temperature | 25 | 90 | < th | dose dependent | rect. | 16 | 19 |
| 59 | 31.56 | temperature | 25 | 270 | < th | dose dependent | rect. | 11 | 20 |
| 77 | 31.64 | wind | 1 | 43200 | < th | dose dependent | rect. | 6 | 1 |
| 99 | 31.72 | temperature | 25 | 720 | > th | dose independent | rect. | 15 | 4 |
| 100 | 31.72 | wind | 1 | 43200 | < th | dose dependent | rect. | 4 | 4 |
| 129 | 31.89 | temperature | 25 | 10 | < th | dose dependent | rect. | 16 | 12 |
| 162 | 32.01 | humidity | 60 | 43200 | < th | dose dependent | rect. | 14 | 1 |
| 188 | 32.08 | temperature | 25 | 10 | < th | dose dependent | rect. | 12 | 20 |
| 196 | 32.11 | humidity | 60 | 43200 | < th | dose dependent | rect. | 24 | 16 |
| 199 | 32.12 | temperature | 10 | 270 | > th | dose dependent | sin | 13 | NA |
| 202 | 32.12 | humidity | 60 | 43200 | < th | dose dependent | rect. | 3 | 13 |
| 215 | 32.16 | humidity | 50 | 43200 | > th | dose independent | rect. | 14 | 2 |
| 225 | 32.18 | wind | 1 | 43200 | > th | dose independent | rect. | 4 | 4 |
| 263 | 32.24 | humidity | 60 | 43200 | < th | dose dependent | rect. | 11 | 5 |
| 280 | 32.26 | temperature | 25 | 720 | < th | dose independent | rect. | 10 | 14 |
| 333 | 32.34 | humidity | 60 | 43200 | < th | dose dependent | sin | 3 | NA |
| 394 | 32.48 | temperature | 25 | 10 | < th | dose dependent | rect. | 12 | 16 |
| 407 | 32.52 | temperature | 25 | 720 | < th | dose independent | rect. | 15 | 8 |
| 430 | 32.55 | temperature | 10 | 720 | > th | dose dependent | rect. | 15 | 6 |
| 443 | 32.56 | temperature | 25 | 720 | < th | dose independent | rect. | 13 | 11 |
| 474 | 32.59 | temperature | 25 | 90 | < th | dose dependent | rect. | 5 | 23 |
| 514 | 32.64 | temperature | 25 | 720 | < th | dose dependent | rect. | 17 | 6 |
| 522 | 32.64 | humidity | 60 | 43200 | < th | dose dependent | rect. | 11 | 23 |
| 524 | 32.65 | temperature | 25 | 720 | > th | dose independent | rect. | 9 | 14 |
| 543 | 32.66 | humidity | 60 | 43200 | < th | dose dependent | no | NA | NA |
| 562 | 32.66 | humidity | 60 | 43200 | < th | dose dependent | rect. | 2 | 23 |
| 591 | 32.68 | humidity | 60 | 43200 | < th | dose dependent | rect. | 6 | 23 |
| 645 | 32.73 | wind | 1 | 43200 | < th | dose independent | rect. | 4 | 4 |
| 665 | 32.74 | temperature | 15 | 90 | > th | dose dependent | rect. | 9 | 20 |
| 701 | 32.78 | humidity | 60 | 43200 | < th | dose dependent | rect. | 13 | 23 |
| 703 | 32.79 | humidity | 50 | 43200 | > th | dose independent | rect. | 13 | 20 |
| 707 | 32.79 | humidity | 70 | 43200 | < th | dose dependent | rect. | 24 | 10 |
| 716 | 32.80 | temperature | 25 | 720 | < th | dose independent | sin | 18 | NA |
| 717 | 32.80 | temperature | 25 | 90 | < th | dose dependent | no | NA | NA |
| 740 | 32.82 | temperature | 25 | 10 | < th | dose dependent | rect. | 6 | 22 |
| 747 | 32.83 | humidity | 70 | 43200 | < th | dose dependent | rect. | 8 | 2 |
| 751 | 32.83 | temperature | 10 | 270 | > th | dose dependent | rect. | 7 | 21 |
| 767 | 32.86 | humidity | 50 | 43200 | > th | dose independent | rect. | 13 | 4 |
| 782 | 32.87 | temperature | 20 | 90 | > th | dose independent | rect. | 9 | 20 |
| 793 | 32.87 | temperature | 25 | 90 | < th | dose dependent | rect. | 3 | 23 |
| 795 | 32.88 | temperature | 25 | 720 | > th | dose independent | sin | 20 | NA |
| 837 | 32.91 | temperature | 25 | 10 | < th | dose dependent | rect. | 3 | 23 |
| 901 | 32.98 | temperature | 25 | 10 | < th | dose dependent | no | NA | NA |
| 924 | 32.99 | temperature | 25 | 90 | < th | dose dependent | rect. | 1 | 23 |
| 925 | 32.99 | temperature | 25 | 30 | < th | dose dependent | rect. | 19 | 23 |
| 930 | 33.00 | temperature | 25 | 30 | < th | dose dependent | rect. | 21 | 23 |
| 931 | 33.00 | temperature | 25 | 30 | < th | dose dependent | rect. | 23 | 23 |
| 932 | 33.01 | temperature | 25 | 720 | < th | dose dependent | rect. | 19 | 2 |
| 952 | 33.03 | humidity | 50 | 43200 | > th | dose independent | rect. | 13 | 7 |