BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os03g0376100 Os03g0376100|AF076495
(360 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT3G01120.1 | chr3:39234-41865 REVERSE LENGTH=564 559 e-160
AT1G33320.1 | chr1:12081009-12083462 FORWARD LENGTH=413 489 e-138
AT3G57050.1 | chr3:21111939-21114521 REVERSE LENGTH=465 229 2e-60
AT1G64660.1 | chr1:24028977-24030537 FORWARD LENGTH=442 146 2e-35
>AT3G01120.1 | chr3:39234-41865 REVERSE LENGTH=564
Length = 563
Score = 559 bits (1441), Expect = e-160, Method: Compositional matrix adjust.
Identities = 259/361 (71%), Positives = 305/361 (84%), Gaps = 1/361 (0%)
Query: 1 SAYWFNNSQELIDFKEGRHASFEYGRYGNPTTEALEKKMSALEKAESTVFVASGMYASVA 60
SAY+F + ELIDFKE R SFEYGRYGNPTT LE K+SALE AEST+ +ASGM AS
Sbjct: 203 SAYFFKKTAELIDFKEKRSVSFEYGRYGNPTTVVLEDKISALEGAESTLVMASGMCASTV 262
Query: 61 MLSALVPAGGHVVTTTDCYRKTRIYMETELPKRGITMTVIRPADMDALQNALDNNNVSLF 120
ML ALVPAGGH+VTTTDCYRKTRI+ME LPK GIT+TVI PAD+ L+ A++ VSLF
Sbjct: 263 MLLALVPAGGHIVTTTDCYRKTRIFMENFLPKLGITVTVIDPADIAGLEAAVNEFKVSLF 322
Query: 121 FTETPTNPFLRCIDIDLVSKMCHSKGALLCIDSTFASPINQKALTLGADLVIHSATKYIA 180
FTE+PTNPFLRC+DI+LVSK+CH +G L+CID TFA+P+NQKAL LGADLV+HSATKYI
Sbjct: 323 FTESPTNPFLRCVDIELVSKICHKRGTLVCIDGTFATPLNQKALALGADLVVHSATKYIG 382
Query: 181 GHNDVIGGCISGRDELVSKVRIYHHVVGGVLNPNAAYLILRGMKTLHLRVQCQNNTAMRM 240
GHNDV+ GCI G +LVS++R HHV+GG LNPNAAYLI+RGMKTLHLRVQ QN+TA RM
Sbjct: 383 GHNDVLAGCICGSLKLVSEIRNLHHVLGGTLNPNAAYLIIRGMKTLHLRVQQQNSTAFRM 442
Query: 241 AQFLEEHPKIARVYYPGLPSHPEHHIAKSQMTGFGGVISFEVAGDFDATRRFIDSVKIPY 300
A+ LE HPK++ VYYPGLPSHPEH +AK QMTGFGGV+SFE+ GD + T +F+DS+KIPY
Sbjct: 443 AEILEAHPKVSHVYYPGLPSHPEHELAKRQMTGFGGVVSFEIDGDIETTIKFVDSLKIPY 502
Query: 301 HAPSFGGCESIIDQPAIMSYWD-SKEQREIYGIKDNLIRFSIGVEDFEDLKNDVVQALDK 359
APSFGGCESI+DQPAIMSYWD +E+R YGIKDNL+RFS GVEDFED+K D++QAL+
Sbjct: 503 IAPSFGGCESIVDQPAIMSYWDLPQEERLKYGIKDNLVRFSFGVEDFEDVKADILQALEA 562
Query: 360 I 360
I
Sbjct: 563 I 563
>AT1G33320.1 | chr1:12081009-12083462 FORWARD LENGTH=413
Length = 412
Score = 489 bits (1258), Expect = e-138, Method: Compositional matrix adjust.
Identities = 231/361 (63%), Positives = 283/361 (78%), Gaps = 2/361 (0%)
Query: 1 SAYWFNNSQELIDFKEGRHASFEYGRYGNPTTEALEKKMSALEKAESTVFVASGMYASVA 60
+ Y+F ++ ELIDFKE R +EY RYGNPTT ALE+K+S LE AEST+ +ASGMYAS
Sbjct: 53 TTYFFKDTTELIDFKEKRIDLYEYARYGNPTTMALEEKISVLEGAESTLVMASGMYASNV 112
Query: 61 MLSALVPAGGHVVTTTDCYRKTRIYMETELPKRGITMTVIRPADMDALQNALDNNNVSLF 120
ML ALVP GH+V T DCY++TRI+ME L K GIT+T I D+ LQ ++N+ VSLF
Sbjct: 113 MLLALVPTNGHIVATKDCYKETRIFMENFLTKLGITVTFIDSDDIAGLQTLVNNHEVSLF 172
Query: 121 FTETPTNPFLRCIDIDLVSKMCHSKGALLCIDSTFASPINQKALTLGADLVIHSATKYIA 180
FTE+PTNPFLRC+DI LVSK+CH +G L+CID+T A+PINQK L LGADLV HSATKYI
Sbjct: 173 FTESPTNPFLRCVDIKLVSKICHRRGTLVCIDATIATPINQKTLALGADLVHHSATKYIG 232
Query: 181 GHNDVIGGCISGRDELVSKVRIYHHVVGGVLNPNAAYLILRGMKTLHLRVQCQNNTAMRM 240
GHND + G ISG ELVSK+R H ++GG LNPNAAYL++RGMKT+HLRV+ QN+T M+M
Sbjct: 233 GHNDFLAGSISGSMELVSKIRNLHKLLGGTLNPNAAYLLIRGMKTMHLRVRQQNSTGMKM 292
Query: 241 AQFLEEHPKIARVYYPGLPSHPEHHIAKSQMTGFGGVISFEVAGDFDATRRFIDSVKIPY 300
AQ LE HPK++RVYY GLPSHPEH IAK QMTG GG+ISFE+ GD T +FID++KIPY
Sbjct: 293 AQVLEAHPKVSRVYYLGLPSHPEHLIAKRQMTGIGGLISFEIDGDLKTTIKFIDALKIPY 352
Query: 301 HAPSFGGCESIIDQPAIMSYWD-SKEQREIYGIKDNLIRFSIGVEDFEDLKNDVVQALDK 359
A SFGGCES++DQ A WD +E+R G +DNL+RFS G+EDFED+K DV+QAL+
Sbjct: 353 LAASFGGCESLVDQLA-TGIWDIPREERLKDGFQDNLVRFSFGIEDFEDIKADVLQALET 411
Query: 360 I 360
I
Sbjct: 412 I 412
>AT3G57050.1 | chr3:21111939-21114521 REVERSE LENGTH=465
Length = 464
Score = 229 bits (584), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 121/334 (36%), Positives = 197/334 (58%), Gaps = 5/334 (1%)
Query: 22 FEYGRYGNPTTEALEKKMSALEKAESTVFVASGMYASVAMLSALVPAGGHVVTTTDCYRK 81
++Y R GNPT +ALE ++ L+KA+ SGM A+++ ++ L+ G +V D Y
Sbjct: 125 YDYTRSGNPTRDALESLLAKLDKADRAFCFTSGM-AALSAVTHLIKNGEEIVAGDDVYGG 183
Query: 82 TRIYMETELPKRGITMTVIRPADMDALQNALDNNNVSLFFTETPTNPFLRCIDIDLVSKM 141
+ + +P+ G+ + + +D + A+ L + E+PTNP + DI +S+M
Sbjct: 184 SDRLLSQVVPRSGVVVKRVNTTKLDEVAAAI-GPQTKLVWLESPTNPRQQISDIRKISEM 242
Query: 142 CHSKGALLCIDSTFASPINQKALTLGADLVIHSATKYIAGHNDVIGGCISGRDE-LVSKV 200
H++GAL+ +D++ SP+ + L LGAD+V+HSATK+IAGH+DV+ G ++ + E L +V
Sbjct: 243 AHAQGALVLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGEKLAKEV 302
Query: 201 RIYHHVVGGVLNPNAAYLILRGMKTLHLRVQCQNNTAMRMAQFLEEHPKIARVYYPGLPS 260
+ G L P +L LRG+KT+ LR++ Q A ++A +L HP++ +VYY GLP
Sbjct: 303 YFLQNSEGSGLAPFDCWLCLRGIKTMALRIEKQQENARKIAMYLSSHPRVKKVYYAGLPD 362
Query: 261 HPEHHIAKSQMTGFGGVISFEVAGDFDATRRFIDSVKIPYHAPSFGGCESIIDQPAIMSY 320
HP HH+ SQ G G V SF + G ++ +++ K A SFG +S+I P MS+
Sbjct: 363 HPGHHLHFSQAKGAGSVFSF-ITGSVALSKHLVETTKYFSIAVSFGSVKSLISMPCFMSH 421
Query: 321 WD-SKEQREIYGIKDNLIRFSIGVEDFEDLKNDV 353
E RE G+ ++L+R S G+ED +DL +D+
Sbjct: 422 ASIPAEVREARGLTEDLVRISAGIEDVDDLISDL 455
>AT1G64660.1 | chr1:24028977-24030537 FORWARD LENGTH=442
Length = 441
Score = 146 bits (368), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 96/333 (28%), Positives = 171/333 (51%), Gaps = 15/333 (4%)
Query: 22 FEYGRYGNPTTEALEKKMSALEKAESTVFVASGMYASVAMLSALVPAGGHVVTTTDCYRK 81
+ Y R+ NPT L ++M+ALE ++ +SGM A +++ L +GGHVV + Y
Sbjct: 93 YVYSRHFNPTVLNLSRQMAALEGTQAAYCTSSGMSAISSVMLQLCSSGGHVVAASTLYGG 152
Query: 82 TRIYMETELPKR-GITMTVIRPADMDALQNALDNNNVSLFFTETPTNPFLRCIDIDLVSK 140
T + LP+ IT + + D A+ NA+ + + E+ NP L DI +S+
Sbjct: 153 THALLSHFLPRTCNITTSFVDITDHGAVANAIVEGRTQVLYFESVANPTLTVADIPELSR 212
Query: 141 MCHSKGALLCIDSTFASPINQKALTLGADLVIHSATKYIAGHNDVIGGCISGRDELVSKV 200
M H KG + +D+TFA P+ LGAD+V+HS +K+I+G D+I G + G + LV ++
Sbjct: 213 MAHEKGVTVVVDNTFA-PMVLSPAKLGADVVVHSISKFISGGADIIAGAVCGSENLVKEM 271
Query: 201 RIYH----HVVGGVLNPNAAYLILRGMKTLHLRVQCQNNTAMRMAQFLEEHPKIARVYYP 256
++G +N A+ + + L LR++ ++ A A+ + + +V YP
Sbjct: 272 MDLRGGSLMLLGPTMNAKVAFELSERIPHLGLRMREHSHRAQVYAERMRDLGM--KVIYP 329
Query: 257 GLPSHPEHHIAKSQMT---GFGGVISFEVAGDFDATRRFI---DSVKIPYHAPSFGGCES 310
GL +HP+H + K + G+GG++S ++ + A + ++ + + A S G E+
Sbjct: 330 GLETHPQHKLFKGMVNRDYGYGGLLSIDMETEEKANKLMAYLQNATQFGFMAVSLGYYET 389
Query: 311 IIDQPAIMSYWD-SKEQREIYGIKDNLIRFSIG 342
++ + + Q+E GI L+R S+G
Sbjct: 390 LMSCSGSSTSSELDPSQKEAAGISPGLVRMSVG 422
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.321 0.136 0.404
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 7,830,395
Number of extensions: 326923
Number of successful extensions: 731
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 722
Number of HSP's successfully gapped: 4
Length of query: 360
Length of database: 11,106,569
Length adjustment: 100
Effective length of query: 260
Effective length of database: 8,364,969
Effective search space: 2174891940
Effective search space used: 2174891940
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 112 (47.8 bits)