FiT-DB / Search/ Help/ Sample detail

Os10g0517500

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Cys/Met metabolism pyridoxal-phosphate-dependent enzymes family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 11.9 (0.0627) R2 : 0.356
β1 : 2.45 (0.251) R2dD : 0.194 R2D : -0.0302
β2 : 1.73 (0.154) R2dC : 0.215 R2C : 0.037
β3 : -3.98 (0.322) R2dE : 0.36 R2E : -0.0489
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -6.33 (1.31) R2dD*E : 0.0584 R2D*E : -0.04
γ1 : 0.361 (0.136) R2dN8 : 0.0101 R2N8 : -0.0486
σ : 1.09
deviance : 543.98
__
_____
C
peak time of C : 21.6
E
wheather : radiation
threshold : 0.9975
memory length : 4339
response mode : < th
dose dependency : dose independent
G
type of G : rect.
peak or start time of G : 18
open length of G : 8.82

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
545.56 1.1 11.9 2.56 1.29 -3.88 -1.46 -6.96 0.308 21.6 0.9986 4326 18 8.96
573.13 1.12 12 2.39 1.3 -3.6 -1.7 -- 0.103 21.3 0.9462 4328 17.9 9.06
543.98 1.09 11.9 2.45 1.73 -3.98 -- -6.33 0.361 21.6 0.9975 4339 18 8.82
569.81 1.11 11.8 2.31 1.56 -3.83 -- -- 0.401 21.6 0.8312 4338 18 8.81
616.38 1.16 11.9 2.56 -- -3 -- -6.32 0.129 -- 0.833 4310 18 8.87
736.37 1.27 12 0.883 1 -- -1.82 -- -0.263 21.7 -- -- -- --
748.84 1.28 12 0.954 1.01 -- -- -- -0.259 21.6 -- -- -- --
608.64 1.15 11.8 2.21 -- -3.18 -- -- 0.134 -- 0.84 4297 18 9.02
648.92 1.19 11.9 -- 1.55 -2.73 -- -- -0.0746 21.6 0.8306 4346 18 8.92
809.66 1.33 11.9 0.962 -- -- -- -- -0.261 -- -- -- -- --
772.81 1.3 12 -- 1.02 -- -- -- -0.365 21.7 -- -- -- --
668.92 1.2 12 -- -- -1.98 -- -- -0.684 -- 0.7299 31403 18 9.08
834.07 1.35 12 -- -- -- -- -- -0.367 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 531.58 humidity 80 43200 < th dose dependent rect. 22 1
8 536.75 humidity 80 43200 < th dose independent rect. 23 1
22 541.11 humidity 80 43200 > th dose independent rect. 24 1
24 542.08 wind 3 43200 < th dose dependent rect. 9 2
27 542.84 humidity 80 43200 < th dose independent rect. 23 5
31 543.10 wind 3 43200 < th dose dependent rect. 8 4
36 543.84 humidity 80 43200 > th dose independent rect. 3 1
38 544.17 radiation 1 14400 < th dose dependent rect. 4 1
42 544.64 humidity 80 43200 < th dose independent rect. 3 1
43 544.68 radiation 1 14400 < th dose dependent rect. 2 3
47 545.38 wind 1 43200 > th dose independent rect. 8 3
50 545.72 humidity 80 43200 > th dose independent rect. 23 6
64 546.40 radiation 1 14400 < th dose independent rect. 18 11
69 546.75 radiation 1 14400 < th dose independent rect. 18 9
77 546.90 humidity 70 14400 < th dose dependent rect. 17 15
84 547.26 radiation 1 14400 < th dose independent rect. 18 5
86 547.31 radiation 1 14400 < th dose independent rect. 18 2
96 547.78 humidity 70 14400 < th dose dependent rect. 17 3
120 548.84 wind 1 43200 > th dose dependent rect. 9 7
122 549.11 humidity 60 14400 < th dose independent rect. 17 16
125 549.19 wind 9 43200 < th dose dependent rect. 9 7
129 549.39 wind 3 43200 > th dose independent rect. 9 5
131 549.81 wind 1 43200 > th dose dependent rect. 5 12
132 549.84 wind 1 43200 > th dose dependent rect. 6 10
135 549.93 humidity 80 43200 > th dose independent rect. 21 10
138 550.07 wind 9 43200 < th dose dependent rect. 6 10
142 550.22 wind 9 43200 < th dose dependent rect. 5 12
154 550.73 wind 3 43200 > th dose independent rect. 3 13
158 550.86 wind 3 43200 > th dose independent rect. 6 9
172 551.32 humidity 90 14400 > th dose independent rect. 21 3
189 551.79 radiation 1 14400 > th dose dependent rect. 18 1
239 553.15 wind 3 43200 < th dose independent rect. 9 1
257 553.80 humidity 90 14400 < th dose independent rect. 17 8
279 554.37 wind 3 43200 < th dose independent rect. 9 5
280 554.38 wind 3 43200 < th dose independent rect. 3 13
283 554.47 wind 1 43200 > th dose dependent sin 1 NA
284 554.48 radiation 1 14400 < th dose dependent rect. 18 1
295 554.59 radiation 1 14400 > th dose independent rect. 18 1
307 554.61 radiation 1 14400 < th dose dependent rect. 18 5
324 554.80 humidity 60 14400 > th dose independent rect. 17 16
330 554.86 wind 9 43200 < th dose dependent sin 0 NA
343 555.07 radiation 1 14400 < th dose dependent rect. 18 11
349 555.19 humidity 60 14400 > th dose independent rect. 17 3
358 555.34 wind 3 43200 < th dose independent rect. 6 9
363 555.40 humidity 60 14400 > th dose independent rect. 17 10
364 555.41 humidity 60 14400 > th dose independent rect. 17 12
367 555.45 wind 3 43200 > th dose independent rect. 9 1
368 555.45 humidity 60 14400 > th dose independent rect. 17 8
383 555.74 humidity 60 14400 > th dose independent rect. 17 6
387 555.78 wind 5 43200 > th dose independent rect. 15 1
416 556.05 radiation 1 14400 < th dose dependent rect. 18 9
440 556.52 humidity 60 14400 < th dose independent rect. 17 3
454 556.69 radiation 30 14400 < th dose independent rect. 16 15
455 556.69 wind 9 43200 > th dose dependent rect. 19 2
457 556.74 radiation 40 43200 > th dose independent rect. 10 1
476 556.94 radiation 30 14400 < th dose independent rect. 16 11
497 557.31 wind 3 43200 > th dose independent sin 2 NA
510 557.49 wind 5 43200 < th dose independent rect. 9 8
515 557.62 wind 5 43200 > th dose dependent rect. 15 1
537 558.02 radiation 30 14400 < th dose independent rect. 16 1
541 558.05 wind 5 43200 < th dose independent rect. 15 1
558 558.26 wind 9 43200 < th dose dependent rect. 3 18
571 558.46 humidity 60 14400 < th dose dependent rect. 16 18
629 559.28 wind 5 43200 < th dose dependent rect. 11 1
637 559.43 wind 1 43200 < th dose independent rect. 24 2
654 559.71 wind 5 43200 < th dose independent rect. 9 11
662 559.88 humidity 90 14400 > th dose independent rect. 18 9
667 559.91 radiation 30 14400 < th dose independent rect. 16 4
682 560.03 wind 5 43200 < th dose independent rect. 5 15
714 560.48 wind 5 43200 < th dose independent rect. 11 5
718 560.50 radiation 30 14400 < th dose independent rect. 16 7
789 561.21 wind 5 43200 > th dose independent rect. 9 11
801 561.36 wind 3 43200 < th dose independent sin 3 NA
823 561.59 wind 5 43200 < th dose independent sin 22 NA
833 561.72 radiation 20 4320 < th dose dependent rect. 18 11
919 562.59 wind 3 43200 > th dose independent rect. 11 2
950 562.86 humidity 90 14400 > th dose dependent rect. 21 3