BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os10g0516600 Os10g0516600|Os10g0516600
(470 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os10g0516600 Protein of unknown function DUF604 family protein 660 0.0
Os04g0578800 Protein of unknown function DUF604 family protein 290 2e-78
Os02g0681100 Protein of unknown function DUF604 family protein 263 2e-70
Os10g0534700 Protein of unknown function DUF604 family protein 250 2e-66
Os03g0124100 Fringe-like family protein 249 3e-66
Os08g0137300 Protein of unknown function DUF604 family protein 232 4e-61
Os03g0269900 Protein of unknown function DUF604 family protein 224 2e-58
Os03g0269700 Protein of unknown function DUF604 family protein 67 3e-11
Os02g0517150 67 4e-11
>Os10g0516600 Protein of unknown function DUF604 family protein
Length = 470
Score = 660 bits (1702), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 345/470 (73%), Positives = 345/470 (73%)
Query: 1 MRKPHHAAQXXXXXXXXXXXXXXXRNCPXXXXXXXXXXXXXXXXXXXXXXXXPASHARXX 60
MRKPHHAAQ RNCP PASHAR
Sbjct: 1 MRKPHHAAQPPPPPPLPLPLPLPPRNCPLATAVLALLSVLLATALWVLLVLSPASHARGP 60
Query: 61 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHIVFGIAGSAHLWPRRREYVRMWWDP 120
HIVFGIAGSAHLWPRRREYVRMWWDP
Sbjct: 61 AAGLSDAADAEAFAVAGGGGGGGGEGAEAPLSLGHIVFGIAGSAHLWPRRREYVRMWWDP 120
Query: 121 AAMRGHVWLDXXXXXXXXXXXXXXXXXXXXIRVSEDTSRFRYTNPTGHPSGLRIARIAAE 180
AAMRGHVWLD IRVSEDTSRFRYTNPTGHPSGLRIARIAAE
Sbjct: 121 AAMRGHVWLDAGAPAAPGPSASGEGSLLPPIRVSEDTSRFRYTNPTGHPSGLRIARIAAE 180
Query: 181 XXXXXXXXXXXXXXXXXXDDDTVVSADNLVAVLGKYDWREMVYVGAPSESHSANTYFSHS 240
DDDTVVSADNLVAVLGKYDWREMVYVGAPSESHSANTYFSHS
Sbjct: 181 AVRLVGGGGGGARWVVLVDDDTVVSADNLVAVLGKYDWREMVYVGAPSESHSANTYFSHS 240
Query: 241 MAFGGGGVALSLPLATALARTLDVCIERYPKLYGSDDRLHACITELGVPLSREYGFHQWD 300
MAFGGGGVALSLPLATALARTLDVCIERYPKLYGSDDRLHACITELGVPLSREYGFHQWD
Sbjct: 241 MAFGGGGVALSLPLATALARTLDVCIERYPKLYGSDDRLHACITELGVPLSREYGFHQWD 300
Query: 301 IRGNAHGILAAHPIAPFISIHHLELVDPIYPGLNSLESLELFTKAMKTEPMSFLQRSICY 360
IRGNAHGILAAHPIAPFISIHHLELVDPIYPGLNSLESLELFTKAMKTEPMSFLQRSICY
Sbjct: 301 IRGNAHGILAAHPIAPFISIHHLELVDPIYPGLNSLESLELFTKAMKTEPMSFLQRSICY 360
Query: 361 DKRQKYTFAVSLGXXXXXXXXXXXXRELERSERTYIAYNRMSQRTEFDFDTKDIQKSLCK 420
DKRQKYTFAVSLG RELERSERTYIAYNRMSQRTEFDFDTKDIQKSLCK
Sbjct: 361 DKRQKYTFAVSLGYVVQVYPYVLLPRELERSERTYIAYNRMSQRTEFDFDTKDIQKSLCK 420
Query: 421 KPILFFLKDVWKDGNITRVDNLFQAGRDNERKQTANSSAAGVPFSCMAAT 470
KPILFFLKDVWKDGNITRVDNLFQAGRDNERKQTANSSAAGVPFSCMAAT
Sbjct: 421 KPILFFLKDVWKDGNITRVDNLFQAGRDNERKQTANSSAAGVPFSCMAAT 470
>Os04g0578800 Protein of unknown function DUF604 family protein
Length = 524
Score = 290 bits (742), Expect = 2e-78, Method: Compositional matrix adjust.
Identities = 145/336 (43%), Positives = 206/336 (61%), Gaps = 9/336 (2%)
Query: 95 HIVFGIAGSAHLWPRRREYVRMWWDP-AAMRGHVWLDXXXXXXXXXXXXXXXXXXXXIRV 153
H+VFGIA S+ W +R+EY+++WW P AMRG+VWLD IR+
Sbjct: 96 HVVFGIAASSRFWDKRKEYIKVWWRPRGAMRGYVWLDREVRESNMSTARTGLPA---IRI 152
Query: 154 SEDTSRFRYTNPTGHPSGLRIARIAAEXXXXXXXXXXXXXXXXXXDDDTVVSADNLVAVL 213
S DTS F YT+ GH S +RI+RI +E DDDTV DNL+ VL
Sbjct: 153 SSDTSGFPYTHRRGHRSAIRISRIVSETFRLGLPGVRWFVMG---DDDTVFFPDNLLTVL 209
Query: 214 GKYDWREMVYVGAPSESHSANTYFSHSMAFGGGGVALSLPLATALARTLDVCIERYPKLY 273
K+D R+ Y+G+ SESH N YFS+ MA+GGGG A+S PLA ALAR D CI RYP LY
Sbjct: 210 NKFDHRQPYYIGSLSESHLQNIYFSYGMAYGGGGFAISRPLAEALARMQDGCIRRYPALY 269
Query: 274 GSDDRLHACITELGVPLSREYGFHQWDIRGNAHGILAAHPIAPFISIHHLELVDPIYPGL 333
GSDDR+ AC+ ELGVPL++ GFHQ+D+ G+ G+LAAHP+AP +++HHL++V P++P
Sbjct: 270 GSDDRIQACMAELGVPLTKHPGFHQYDVYGDLLGLLAAHPVAPIVTLHHLDVVQPLFPNA 329
Query: 334 NSLESL--ELFTKAMKTEPMSFLQRSICYDKRQKYTFAVSLGXXXXXXXXXXXXRELERS 391
S + LF ++ +P +Q+SICYD ++T +V+ G RE+E
Sbjct: 330 KSRPAAVRRLFDGPIELDPAGIMQQSICYDGGNRWTVSVAWGFAVLVSRGVMSPREMEMP 389
Query: 392 ERTYIAYNRMSQRTEFDFDTKDIQKSLCKKPILFFL 427
RT++ + R + T + F+T+ + +S C+KP +++L
Sbjct: 390 ARTFLNWYRRADYTAYAFNTRPLARSPCQKPAVYYL 425
>Os02g0681100 Protein of unknown function DUF604 family protein
Length = 516
Score = 263 bits (672), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 149/350 (42%), Positives = 205/350 (58%), Gaps = 16/350 (4%)
Query: 95 HIVFGIAGSAHLWPRRREYVRMWWDP-AAMRGHVWLDXXXXXXXXXXXXXXXXXXXXIRV 153
H+VFGIA SA LW +R++Y+++WW P A MRG VW+D I++
Sbjct: 95 HVVFGIAASARLWEKRKDYIKIWWRPNAGMRGFVWMDQPVRESGVPDGLPP------IKI 148
Query: 154 SEDTSRFRYTNPTGHPSGLRIARIAAEXXXXXXXXXXXXXXXXXXDDDTVVSADNLVAVL 213
S +TS F Y N GH S +RI+RI +E DDDTV DNLVAVL
Sbjct: 149 SSNTSGFPYKNRRGHRSAIRISRIVSETFRLGLSGVRWYVMG---DDDTVFLPDNLVAVL 205
Query: 214 GKYDWREMVYVGAPSESHSANTYFSHSMAFGGGGVALSLPLATALARTLDVCIERYPKLY 273
K D R+ Y+G PSESH N +FS+ MAFGGGG A+S PLA L R D CI RYP LY
Sbjct: 206 QKLDHRQPYYIGYPSESHLQNIFFSYGMAFGGGGFAISQPLAARLERMQDACIHRYPSLY 265
Query: 274 GSDDRLHACITELGVPLSREYGFHQWDIRGNAHGILAAHPIAPFISIHHLELVDPIYPGL 333
GSDDR+HAC+ ELGVPL+R GFHQ+D+ G+ G+LAAHP+AP +S+HHL++V P++P
Sbjct: 266 GSDDRIHACMAELGVPLTRHPGFHQYDVYGDLLGLLAAHPVAPLVSLHHLDVVRPLFPNA 325
Query: 334 NSLESL--ELFTKAMKTEPMSFLQRSICYDKRQKYTFAVSLGXXXXXXXXXXXXRELERS 391
S + LF + + +Q+SICYD R ++T +VS G RE+E
Sbjct: 326 RSRPAALRRLFEGPVALDSAGAVQQSICYDARNRWTVSVSWGFVVMASRGMISAREMELP 385
Query: 392 ERTYIAYNRMSQRTEFDFDTKDIQKSLCKKPILFFL----KDVWKDGNIT 437
RT++ + + + F+T+ + + C+KP ++L + V +DG T
Sbjct: 386 ARTFLNWYKRADYKAHAFNTRPLARRPCEKPSFYYLSSARRTVARDGETT 435
>Os10g0534700 Protein of unknown function DUF604 family protein
Length = 527
Score = 250 bits (638), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 135/334 (40%), Positives = 196/334 (58%), Gaps = 8/334 (2%)
Query: 95 HIVFGIAGSAHLWPRRREYVRMWWDPAAMRGHVWLDXXXXXXXXXXXXXXXXXXXXIRVS 154
HI FGI S+ LW R+EY+++WW P MRG VW+D I VS
Sbjct: 109 HIAFGIGASSALWKSRKEYIKLWWRPGRMRGFVWMDRPVEEFYSKSSRTGLPP---IMVS 165
Query: 155 EDTSRFRYTNPTGHPSGLRIARIAAEXXXXXXXXXXXXXXXXXXDDDTVVSADNLVAVLG 214
DTS+F YT+ G S LRI+RI +E DDDTV +NLV VL
Sbjct: 166 SDTSKFPYTHGAGSRSALRISRIVSETFRLGLPGVRWFVMG---DDDTVFLPENLVHVLS 222
Query: 215 KYDWREMVYVGAPSESHSANTYFSHSMAFGGGGVALSLPLATALARTLDVCIERYPKLYG 274
+YD R+ Y+G+PSESH N FS+ MAFGGGG A+S LA LA+ D C+ RYP LYG
Sbjct: 223 QYDHRQPYYIGSPSESHIQNLIFSYGMAFGGGGFAISRALAEELAKMQDGCLHRYPALYG 282
Query: 275 SDDRLHACITELGVPLSREYGFHQWDIRGNAHGILAAHPIAPFISIHHLELVDPIYPGLN 334
SDDR+HAC++ELGVPL+R GFHQ D+ G+ G+L AHP+AP +++HHL+ ++P++P
Sbjct: 283 SDDRIHACMSELGVPLTRHPGFHQCDLWGDVLGLLGAHPVAPLVTLHHLDFLEPVFPTTP 342
Query: 335 SLESL--ELFTKAMKTEPMSFLQRSICYDKRQKYTFAVSLGXXXXXXXXXXXXRELERSE 392
S +LF ++ + + Q+S+CYD+ +T +VS G RE+E
Sbjct: 343 SRAGALRKLFDGPVRLDSAAVAQQSVCYDREHHWTVSVSWGFAVMVVRGVLSPREMETPM 402
Query: 393 RTYIAYNRMSQRTEFDFDTKDIQKSLCKKPILFF 426
R+++ + + + T + F+T+ + + C+KP +++
Sbjct: 403 RSFLNWYKRADYTAYSFNTRPVARQPCQKPRVYY 436
>Os03g0124100 Fringe-like family protein
Length = 506
Score = 249 bits (636), Expect = 3e-66, Method: Compositional matrix adjust.
Identities = 137/336 (40%), Positives = 191/336 (56%), Gaps = 8/336 (2%)
Query: 95 HIVFGIAGSAHLWPRRREYVRMWWDPAAMRGHVWLDXXXXXXXXXXXXXXXXXXXXIRVS 154
HIVFGIA S+ LW RREY+R WW P M G VWLD I++S
Sbjct: 86 HIVFGIAASSELWKSRREYIRTWWRPEQMSGFVWLDKPVYEFYSRNASTGLPG---IKIS 142
Query: 155 EDTSRFRYTNPTGHPSGLRIARIAAEXXXXXXXXXXXXXXXXXXDDDTVVSADNLVAVLG 214
+T++F YT+ G S LRI RI +E DDDTV DNLV VL
Sbjct: 143 GNTTKFPYTHGRGSRSALRITRIVSESFRLGLPGARWFVMG---DDDTVFFPDNLVDVLS 199
Query: 215 KYDWREMVYVGAPSESHSANTYFSHSMAFGGGGVALSLPLATALARTLDVCIERYPKLYG 274
+YD + Y+G PSESH N FS+ MAFGGGG A+S LA LA D CI+RYP LYG
Sbjct: 200 RYDHTQPYYIGNPSESHIQNLIFSYGMAFGGGGFAISRALAAQLAHMQDGCIDRYPALYG 259
Query: 275 SDDRLHACITELGVPLSREYGFHQWDIRGNAHGILAAHPIAPFISIHHLELVDPIYPGLN 334
SDDR+HAC+ ELGVPL+R GFHQ D+ G+ G+L AHP+ P +++HHL+ + P++P
Sbjct: 260 SDDRIHACVAELGVPLTRHLGFHQCDLWGDVLGLLGAHPVVPLVTLHHLDFLQPVFPTTR 319
Query: 335 SLESL--ELFTKAMKTEPMSFLQRSICYDKRQKYTFAVSLGXXXXXXXXXXXXRELERSE 392
S + LF + + Q+S+CYD +++T +VS G RE+E
Sbjct: 320 SRTAALRRLFEGPARLDSAGVAQQSVCYDGDKQWTVSVSWGFAVVVTRGVLSPREMEMPM 379
Query: 393 RTYIAYNRMSQRTEFDFDTKDIQKSLCKKPILFFLK 428
RT++ + R + T + F+T+ + + C+ P +++++
Sbjct: 380 RTFLNWYRRADYTAYAFNTRPVARQPCQTPQVYYMR 415
>Os08g0137300 Protein of unknown function DUF604 family protein
Length = 493
Score = 232 bits (592), Expect = 4e-61, Method: Compositional matrix adjust.
Identities = 118/281 (41%), Positives = 166/281 (59%), Gaps = 4/281 (1%)
Query: 154 SEDTSRFRYTNPTGHPSGLRIARIAAEXXXXXXXXXXXXXX---XXXXDDDTVVSADNLV 210
S D SRF YT+P G PS +R+ARIA E DDDT NL+
Sbjct: 133 STDASRFPYTHPRGLPSAVRVARIAKELLQLDDHHHATPPPPRWLVLADDDTAFVLPNLL 192
Query: 211 AVLGKYDWREMVYVGAPSESHSANTYFSHSMAFGGGGVALSLPLATALARTLDVCIERYP 270
L +YDWRE Y+GA SES + N + +MA+GGGG+A+S PLA LAR LD C+ RYP
Sbjct: 193 HTLSRYDWREPWYLGARSESAAQNAWHGFAMAYGGGGIAVSWPLAARLARVLDSCLLRYP 252
Query: 271 KLYGSDDRLHACITELGVPLSREYGFHQWDIRGNAHGILAAHPIAPFISIHHLELVDPIY 330
LYGSD R+HAC+ ELGV L+ E GFHQ D+ G+ G+L AHP+ P +S+HHL+ V P+Y
Sbjct: 253 HLYGSDARIHACLAELGVELTHEPGFHQIDLHGDISGLLRAHPLTPLVSLHHLDHVYPLY 312
Query: 331 PGLNSLESLELFTKAMKTEPMSFLQRSICYDKRQKYTFAVSLGXXXXXXXXXXXXRELER 390
PG++ +++ F +A +P LQ+++CYD + T +++ G +L
Sbjct: 313 PGMDRATAVKHFFRAANADPARILQQTVCYDHSKAITVSIAWGYSVQVYKGNVLLPDLLA 372
Query: 391 SERTYIAYNRMSQRTE-FDFDTKDIQKSLCKKPILFFLKDV 430
++T++ + R T+ F FDTK + CK+ LFFLK +
Sbjct: 373 VQKTFVPWKRGRNATDVFMFDTKHYPRDECKRAALFFLKSI 413
>Os03g0269900 Protein of unknown function DUF604 family protein
Length = 527
Score = 224 bits (570), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 142/352 (40%), Positives = 189/352 (53%), Gaps = 25/352 (7%)
Query: 95 HIVFGIAGSAHLWPRRREYVRMWWDPAAMRGHVWLDXXXXXXXXXXXXXXXXXXXXIRVS 154
HIVFG+ SA W +RR Y +WW P MRGHVWLD RVS
Sbjct: 99 HIVFGVGASARTWDKRRGYAELWWRPGEMRGHVWLDEQPVGPWPAATCPP------YRVS 152
Query: 155 EDTSRFRYTNPTGHPSGLRIARIAAEXXXXXXXXXXXXXXXX-------XXDDDTVVSAD 207
D SRF S R+ARI A+ DDDTV D
Sbjct: 153 ADASRF-----GDRASASRMARIVADSFLAVTAEMANGTTDSPEARWFVMGDDDTVFFPD 207
Query: 208 NLVAVLGKYDWREMVYVGAPSESHSANTYFSHSMAFGGGGVALSLPLATALARTLDVCIE 267
NLVAVL KYD EM YVGAPSES + S+ MAFGGGG A+S P A LA+ +D C+E
Sbjct: 208 NLVAVLNKYDHEEMYYVGAPSESVEQDVMHSYGMAFGGGGFAVSYPAAAELAKAIDGCLE 267
Query: 268 RYPKLYGSDDRLHACITELGVPLSREYGFHQWDIRGNAHGILAAHPIAPFISIHHLELVD 327
RY YGSD R+ AC++ELGVPL+RE GFHQ D+RG+A+G+LAAHP+AP +S+HHL+ ++
Sbjct: 268 RYRLFYGSDQRVQACLSELGVPLTREPGFHQVDVRGDAYGMLAAHPLAPLVSLHHLDHIE 327
Query: 328 PIYPG---LNSLESLELFTKAMKTEPMSFLQRSICYDKRQKYTFAVSL--GXXXXXXXXX 382
PI PG + L++ +A + + LQ++ CY + +YT++VS+ G
Sbjct: 328 PISPGGQHGSPLDAARRLVRASRLDQARSLQQAFCYQRGPRYTWSVSVSWGYTVQLYPWA 387
Query: 383 XXXRELERSERTYIAYNRMSQRTEFDFDTKDIQK-SLCKKPILFFLKDVWKD 433
ELE RT+ + + F F+T+ + + C + +FFL D
Sbjct: 388 VAPHELEVPLRTFKTWRSWAD-GPFVFNTRPLSRDDACAQRAVFFLSAARND 438
>Os03g0269700 Protein of unknown function DUF604 family protein
Length = 254
Score = 66.6 bits (161), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 47/153 (30%), Positives = 80/153 (52%), Gaps = 21/153 (13%)
Query: 298 QWDIRGNAHGILAAHPIAPFISIHHLELVDPIYPG-LNSLESLELFTKAMKTEPMSFLQR 356
Q D++G+ +G+LAAHP+AP +S+HHL+ ++PI P L L ++ A + +P LQ+
Sbjct: 16 QLDLKGHVYGLLAAHPVAPLVSLHHLDRLNPISPNWLKRLPAVRSLVGASRHDPSRTLQQ 75
Query: 357 SICY-----------DKRQKYTFAVSL--GXXXXXXXXXXXXRELERSERTYIAYNRMSQ 403
+ICY +R+++T +VS+ G EL+ RT+ A++ S
Sbjct: 76 AICYHHDARGGGRRRRRRRQFTLSVSVSWGYMVHLYPAAVPPHELQTPLRTFRAWSG-SP 134
Query: 404 RTEFDFDTK-----DIQKSLC-KKPILFFLKDV 430
F +T+ + C +KPI+F+L V
Sbjct: 135 AGPFTVNTRPEATPNATALPCHRKPIMFYLDRV 167
>Os02g0517150
Length = 232
Score = 66.6 bits (161), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 33/57 (57%), Positives = 40/57 (70%)
Query: 199 DDDTVVSADNLVAVLGKYDWREMVYVGAPSESHSANTYFSHSMAFGGGGVALSLPLA 255
DDDTV DN+VAVL K+D + Y+GAPSES + S+SMAFGGGG A+S P A
Sbjct: 176 DDDTVFFPDNMVAVLNKFDHAKTYYIGAPSESVEQDVMHSYSMAFGGGGFAISYPAA 232
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.322 0.135 0.425
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 11,910,395
Number of extensions: 404678
Number of successful extensions: 876
Number of sequences better than 1.0e-10: 9
Number of HSP's gapped: 854
Number of HSP's successfully gapped: 9
Length of query: 470
Length of database: 17,035,801
Length adjustment: 104
Effective length of query: 366
Effective length of database: 11,605,545
Effective search space: 4247629470
Effective search space used: 4247629470
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 158 (65.5 bits)