Os03g0269700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Protein of unknown function DUF604 family protein.
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Os03g0269700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Protein of unknown function DUF604 family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 149.79 | 0.575 | 3.26 | -1.46 | 0.831 | -0.604 | -2.72 | 2.77 | -0.351 | 9.81 | 71 | 1647 | -- | -- |
| 158.12 | 0.586 | 3.26 | -1.18 | 0.853 | -0.383 | -2.79 | -- | -0.317 | 10.3 | 72.68 | 1365 | -- | -- |
| 174.74 | 0.62 | 3.25 | -1.39 | 0.788 | -0.283 | -- | 2.06 | -0.291 | 9.48 | 70.91 | 1609 | -- | -- |
| 186.05 | 0.635 | 3.27 | -1.23 | 1.02 | -0.603 | -- | -- | -0.347 | 10.3 | 88.56 | 887 | -- | -- |
| 207.69 | 0.675 | 3.27 | -1.39 | -- | -0.498 | -- | 2.14 | -0.302 | -- | 68.91 | 1568 | -- | -- |
| 160.39 | 0.594 | 3.24 | -1.2 | 0.839 | -- | -2.8 | -- | -0.239 | 10.3 | -- | -- | -- | -- |
| 192.06 | 0.649 | 3.25 | -1.31 | 0.853 | -- | -- | -- | -0.246 | 10.3 | -- | -- | -- | -- |
| 225.03 | 0.702 | 3.28 | -1.3 | -- | -0.428 | -- | -- | -0.281 | -- | 68.91 | 1568 | -- | -- |
| 225.29 | 0.699 | 3.25 | -- | 1.09 | -0.805 | -- | -- | -0.249 | 10.3 | 88.25 | 927 | -- | -- |
| 236.36 | 0.718 | 3.27 | -1.32 | -- | -- | -- | -- | -0.248 | -- | -- | -- | -- | -- |
| 237.09 | 0.72 | 3.21 | -- | 0.86 | -- | -- | -- | -0.1 | 10.4 | -- | -- | -- | -- |
| 269.91 | 0.768 | 3.25 | -- | -- | -0.448 | -- | -- | -0.137 | -- | 68.91 | 1568 | -- | -- |
| 282.33 | 0.784 | 3.24 | -- | -- | -- | -- | -- | -0.102 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 144.74 | temperature | 30 | 90 | < th | dose dependent | rect. | 10 | 1 |
| 3 | 145.69 | humidity | 90 | 1440 | > th | dose dependent | rect. | 23 | 2 |
| 6 | 146.00 | atmosphere | 1010 | 10 | < th | dose dependent | rect. | 2 | 9 |
| 13 | 146.35 | atmosphere | 1005 | 30 | > th | dose dependent | rect. | 5 | 7 |
| 34 | 146.70 | humidity | 80 | 1440 | < th | dose independent | rect. | 12 | 2 |
| 47 | 147.13 | humidity | 80 | 1440 | > th | dose independent | rect. | 12 | 2 |
| 55 | 147.30 | humidity | 90 | 1440 | > th | dose dependent | rect. | 12 | 14 |
| 65 | 147.46 | atmosphere | 1010 | 10 | < th | dose dependent | rect. | 24 | 11 |
| 71 | 147.56 | temperature | 25 | 10 | < th | dose independent | rect. | 11 | 1 |
| 73 | 147.57 | wind | 3 | 30 | > th | dose independent | rect. | 11 | 1 |
| 75 | 147.65 | humidity | 90 | 1440 | > th | dose independent | rect. | 23 | 1 |
| 84 | 147.71 | humidity | 90 | 720 | > th | dose dependent | rect. | 21 | 10 |
| 86 | 147.72 | atmosphere | 1005 | 30 | > th | dose dependent | rect. | 5 | 18 |
| 101 | 147.92 | atmosphere | 1005 | 30 | > th | dose dependent | rect. | 1 | 11 |
| 102 | 147.93 | temperature | 25 | 90 | < th | dose independent | rect. | 10 | 1 |
| 125 | 148.14 | humidity | 70 | 1440 | > th | dose dependent | rect. | 12 | 2 |
| 135 | 148.19 | atmosphere | 1005 | 30 | > th | dose dependent | rect. | 24 | 23 |
| 153 | 148.32 | humidity | 60 | 30 | > th | dose independent | rect. | 11 | 1 |
| 173 | 148.42 | humidity | 90 | 720 | > th | dose dependent | sin | 12 | NA |
| 176 | 148.44 | atmosphere | 1005 | 10 | > th | dose dependent | rect. | 5 | 10 |
| 182 | 148.48 | humidity | 90 | 1440 | > th | dose dependent | sin | 16 | NA |
| 212 | 148.64 | atmosphere | 1005 | 30 | > th | dose independent | rect. | 5 | 7 |
| 246 | 148.79 | radiation | 20 | 270 | < th | dose independent | rect. | 8 | 3 |
| 263 | 148.89 | wind | 3 | 30 | > th | dose independent | rect. | 7 | 5 |
| 278 | 148.93 | humidity | 70 | 1440 | > th | dose dependent | rect. | 11 | 21 |
| 279 | 148.93 | atmosphere | 1015 | 10 | < th | dose dependent | rect. | 12 | 23 |
| 284 | 148.97 | atmosphere | 1005 | 90 | < th | dose independent | rect. | 3 | 7 |
| 296 | 149.02 | atmosphere | 1005 | 270 | < th | dose independent | rect. | 3 | 4 |
| 313 | 149.12 | humidity | 90 | 1440 | < th | dose independent | rect. | 23 | 1 |
| 314 | 149.12 | atmosphere | 1010 | 270 | > th | dose independent | rect. | 8 | 1 |
| 320 | 149.13 | atmosphere | 1005 | 270 | < th | dose independent | rect. | 1 | 7 |
| 321 | 149.13 | humidity | 90 | 720 | > th | dose independent | rect. | 21 | 11 |
| 344 | 149.22 | atmosphere | 995 | 30 | > th | dose dependent | rect. | 20 | 16 |
| 362 | 149.28 | atmosphere | 1005 | 10 | > th | dose dependent | sin | 4 | NA |
| 397 | 149.37 | atmosphere | 1010 | 10 | < th | dose independent | rect. | 12 | 23 |
| 423 | 149.43 | atmosphere | 1015 | 90 | < th | dose dependent | rect. | 2 | 16 |
| 430 | 149.45 | radiation | 30 | 270 | < th | dose dependent | rect. | 8 | 3 |
| 451 | 149.50 | atmosphere | 995 | 43200 | < th | dose dependent | rect. | 12 | 18 |
| 460 | 149.52 | humidity | 90 | 720 | > th | dose dependent | rect. | 4 | 22 |
| 488 | 149.59 | atmosphere | 1015 | 10 | < th | dose dependent | rect. | 2 | 17 |
| 542 | 149.68 | atmosphere | 995 | 43200 | < th | dose dependent | rect. | 13 | 14 |
| 543 | 149.69 | atmosphere | 1000 | 14400 | < th | dose dependent | rect. | 16 | 4 |
| 566 | 149.72 | atmosphere | 1015 | 270 | < th | dose dependent | rect. | 24 | 16 |
| 569 | 149.73 | humidity | 80 | 1440 | > th | dose independent | rect. | 1 | 17 |
| 583 | 149.74 | humidity | 70 | 1440 | > th | dose dependent | rect. | 20 | 20 |
| 587 | 149.75 | atmosphere | 1000 | 14400 | < th | dose dependent | rect. | 16 | 1 |
| 625 | 149.79 | humidity | 50 | 720 | > th | dose dependent | rect. | 22 | 10 |
| 638 | 149.81 | humidity | 80 | 1440 | > th | dose independent | rect. | 4 | 14 |
| 667 | 149.84 | atmosphere | 1005 | 270 | < th | dose dependent | rect. | 3 | 4 |
| 682 | 149.85 | atmosphere | 995 | 43200 | < th | dose dependent | sin | 15 | NA |
| 689 | 149.86 | atmosphere | 1005 | 270 | < th | dose independent | rect. | 5 | 2 |
| 741 | 149.92 | atmosphere | 995 | 43200 | > th | dose independent | rect. | 17 | 19 |
| 775 | 149.95 | atmosphere | 1000 | 14400 | < th | dose independent | rect. | 19 | 1 |
| 789 | 149.96 | radiation | 30 | 90 | < th | dose dependent | rect. | 10 | 1 |
| 832 | 150.00 | atmosphere | 995 | 43200 | > th | dose independent | sin | 8 | NA |
| 838 | 150.01 | atmosphere | 995 | 43200 | > th | dose independent | rect. | 18 | 17 |
| 847 | 150.02 | atmosphere | 1010 | 30 | < th | dose independent | rect. | 2 | 17 |
| 858 | 150.03 | atmosphere | 995 | 43200 | < th | dose independent | rect. | 17 | 19 |
| 872 | 150.04 | atmosphere | 995 | 43200 | < th | dose independent | sin | 8 | NA |
| 892 | 150.06 | humidity | 80 | 1440 | < th | dose independent | rect. | 1 | 17 |
| 893 | 150.06 | atmosphere | 995 | 43200 | < th | dose independent | rect. | 18 | 17 |
| 903 | 150.06 | humidity | 60 | 90 | > th | dose dependent | rect. | 23 | 11 |
| 910 | 150.06 | humidity | 50 | 10 | > th | dose dependent | rect. | 12 | 23 |
| 925 | 150.08 | humidity | 80 | 1440 | < th | dose independent | rect. | 5 | 13 |
| 946 | 150.09 | humidity | 90 | 720 | > th | dose dependent | rect. | 5 | 1 |
| 976 | 150.12 | humidity | 80 | 1440 | > th | dose independent | sin | 23 | NA |
| 996 | 150.13 | atmosphere | 1010 | 270 | < th | dose independent | rect. | 24 | 16 |