Os04g0578800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Protein of unknown function DUF604 family protein.
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Os04g0578800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Protein of unknown function DUF604 family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 142.12 | 0.56 | 6.78 | -1.36 | 0.356 | 1.56 | -0.345 | 0.188 | -0.796 | 1.29 | 23.96 | 1344 | -- | -- |
| 142.12 | 0.555 | 6.79 | -1.41 | 0.355 | 1.58 | -0.317 | -- | -0.805 | 1.35 | 23.9 | 1341 | -- | -- |
| 142.48 | 0.556 | 6.79 | -1.35 | 0.375 | 1.54 | -- | 0.172 | -0.811 | 1.62 | 23.73 | 1352 | -- | -- |
| 142.48 | 0.556 | 6.79 | -1.41 | 0.369 | 1.57 | -- | -- | -0.827 | 1.6 | 23.7 | 1350 | -- | -- |
| 148.07 | 0.567 | 6.79 | -1.42 | -- | 1.72 | -- | -0.0317 | -0.841 | -- | 23.61 | 1227 | -- | -- |
| 233.2 | 0.716 | 6.73 | -0.864 | 0.573 | -- | -0.0237 | -- | -0.547 | 1.84 | -- | -- | -- | -- |
| 233.21 | 0.715 | 6.73 | -0.863 | 0.574 | -- | -- | -- | -0.547 | 1.84 | -- | -- | -- | -- |
| 148.06 | 0.567 | 6.79 | -1.41 | -- | 1.72 | -- | -- | -0.839 | -- | 23.57 | 1224 | -- | -- |
| 190 | 0.642 | 6.74 | -- | 0.356 | 1.27 | -- | -- | -0.593 | 1.64 | 24.31 | 1312 | -- | -- |
| 253.12 | 0.743 | 6.72 | -0.84 | -- | -- | -- | -- | -0.534 | -- | -- | -- | -- | -- |
| 252.84 | 0.744 | 6.71 | -- | 0.558 | -- | -- | -- | -0.451 | 1.8 | -- | -- | -- | -- |
| 196.13 | 0.652 | 6.74 | -- | -- | 1.41 | -- | -- | -0.61 | -- | 24.09 | 1219 | -- | -- |
| 271.72 | 0.769 | 6.7 | -- | -- | -- | -- | -- | -0.441 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 144.61 | temperature | 25 | 1440 | > th | dose dependent | rect. | 12 | 22 |
| 3 | 144.61 | temperature | 25 | 1440 | > th | dose dependent | rect. | 18 | 23 |
| 5 | 144.65 | temperature | 25 | 1440 | > th | dose dependent | rect. | 8 | 21 |
| 29 | 144.84 | temperature | 25 | 1440 | > th | dose dependent | no | NA | NA |
| 57 | 144.91 | temperature | 25 | 1440 | > th | dose dependent | rect. | 14 | 23 |
| 63 | 144.96 | temperature | 20 | 1440 | > th | dose dependent | rect. | 1 | 16 |
| 139 | 145.37 | temperature | 25 | 1440 | > th | dose dependent | sin | 19 | NA |
| 148 | 145.41 | temperature | 20 | 1440 | > th | dose dependent | sin | 3 | NA |
| 294 | 146.06 | temperature | 20 | 1440 | > th | dose dependent | rect. | 6 | 2 |
| 465 | 146.95 | temperature | 25 | 4320 | < th | dose independent | rect. | 7 | 2 |
| 489 | 147.07 | temperature | 10 | 1440 | > th | dose dependent | rect. | 4 | 13 |
| 500 | 147.13 | temperature | 25 | 4320 | < th | dose independent | rect. | 6 | 4 |
| 605 | 147.60 | temperature | 25 | 4320 | > th | dose independent | rect. | 6 | 4 |
| 608 | 147.61 | temperature | 25 | 1440 | > th | dose dependent | rect. | 12 | 1 |
| 626 | 147.66 | temperature | 25 | 4320 | > th | dose independent | rect. | 7 | 2 |
| 642 | 147.73 | temperature | 25 | 1440 | > th | dose dependent | rect. | 16 | 1 |