Os03g0269900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Protein of unknown function DUF604 family protein.
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Os03g0269900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Protein of unknown function DUF604 family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = wind,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 68.91 | 0.39 | 10.8 | 0.418 | 1.76 | 1.37 | 0.92 | 7.94 | -0.0878 | 7.13 | 5.802 | 2397 | -- | -- |
| 85.76 | 0.431 | 10.6 | 0.425 | 1.79 | 0.388 | 0.811 | -- | 0.063 | 7.02 | 5.495 | 20794 | -- | -- |
| 70.91 | 0.392 | 10.8 | 0.422 | 1.76 | 1.33 | -- | 7.71 | -0.0921 | 7.1 | 5.824 | 2496 | -- | -- |
| 85.7 | 0.431 | 10.7 | 0.428 | 1.79 | 0.477 | -- | -- | -0.0259 | 7.12 | 3.1 | 21077 | -- | -- |
| 232.95 | 0.711 | 10.8 | 0.449 | -- | 1.28 | -- | 8.01 | -0.054 | -- | 6.1 | 2534 | -- | -- |
| 86.86 | 0.437 | 10.7 | 0.207 | 1.75 | -- | 0.778 | -- | 0.00446 | 7.04 | -- | -- | -- | -- |
| 88.44 | 0.44 | 10.7 | 0.222 | 1.75 | -- | -- | -- | 0.00268 | 7.04 | -- | -- | -- | -- |
| 220.11 | 0.694 | 10.7 | 0.0397 | -- | -0.586 | -- | -- | 0.0149 | -- | 3.045 | 20061 | -- | -- |
| 89.72 | 0.444 | 10.7 | -- | 1.77 | 0.0166 | -- | -- | -0.0224 | 7.01 | 3.094 | 21021 | -- | -- |
| 250.16 | 0.739 | 10.7 | 0.256 | -- | -- | -- | -- | 0.0346 | -- | -- | -- | -- | -- |
| 89.73 | 0.443 | 10.7 | -- | 1.76 | -- | -- | -- | -0.022 | 7.03 | -- | -- | -- | -- |
| 220.15 | 0.693 | 10.7 | -- | -- | -0.59 | -- | -- | 0.0105 | -- | 3.045 | 20061 | -- | -- |
| 251.89 | 0.741 | 10.7 | -- | -- | -- | -- | -- | 0.00611 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 72.29 | wind | 5.0 | 720 | < th | dose independent | rect. | 7 | 12 |
| 3 | 72.85 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 17 | 1 |
| 4 | 72.85 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 17 | 1 |
| 5 | 72.91 | wind | 5.0 | 4320 | > th | dose dependent | rect. | 17 | 1 |
| 7 | 72.95 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 17 | 1 |
| 8 | 73.39 | wind | 5.0 | 1440 | > th | dose dependent | rect. | 14 | 20 |
| 9 | 73.42 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 17 | 1 |
| 15 | 73.72 | wind | 5.0 | 1440 | > th | dose independent | sin | 20 | NA |
| 18 | 73.79 | wind | 5.0 | 4320 | > th | dose dependent | rect. | 16 | 5 |
| 20 | 73.82 | wind | 9.0 | 4320 | < th | dose independent | rect. | 17 | 4 |
| 21 | 73.82 | wind | 5.0 | 720 | < th | dose independent | rect. | 14 | 21 |
| 22 | 73.83 | wind | 5.0 | 1440 | > th | dose independent | rect. | 7 | 15 |
| 37 | 73.91 | wind | 5.0 | 1440 | > th | dose independent | rect. | 13 | 21 |
| 48 | 73.94 | wind | 5.0 | 1440 | > th | dose independent | rect. | 11 | 11 |
| 62 | 73.99 | humidity | 90.0 | 720 | < th | dose independent | rect. | 19 | 4 |
| 70 | 74.02 | wind | 7.0 | 4320 | > th | dose independent | rect. | 17 | 4 |
| 82 | 74.04 | humidity | 90.0 | 30 | < th | dose independent | rect. | 20 | 20 |
| 83 | 74.04 | wind | 5.0 | 1440 | > th | dose dependent | rect. | 12 | 11 |
| 88 | 74.06 | wind | 5.0 | 1440 | > th | dose dependent | sin | 18 | NA |
| 89 | 74.06 | wind | 5.0 | 1440 | > th | dose dependent | rect. | 14 | 9 |
| 99 | 74.11 | wind | 5.0 | 1440 | < th | dose independent | sin | 20 | NA |
| 138 | 74.17 | wind | 5.0 | 4320 | > th | dose dependent | rect. | 14 | 14 |
| 180 | 74.26 | wind | 5.0 | 4320 | > th | dose independent | rect. | 17 | 1 |
| 188 | 74.26 | wind | 5.0 | 1440 | > th | dose independent | rect. | 21 | 22 |
| 275 | 74.41 | wind | 5.0 | 1440 | < th | dose independent | rect. | 11 | 11 |
| 328 | 74.47 | wind | 5.0 | 4320 | > th | dose independent | rect. | 14 | 15 |
| 339 | 74.48 | wind | 5.0 | 720 | < th | dose independent | rect. | 5 | 23 |
| 351 | 74.50 | wind | 5.0 | 4320 | > th | dose dependent | rect. | 16 | 11 |
| 381 | 74.55 | humidity | 90.0 | 30 | < th | dose independent | rect. | 20 | 10 |
| 390 | 74.56 | wind | 5.0 | 1440 | > th | dose independent | no | NA | NA |
| 412 | 74.59 | wind | 5.0 | 1440 | < th | dose independent | rect. | 21 | 22 |
| 429 | 74.63 | humidity | 90.0 | 720 | < th | dose independent | rect. | 20 | 1 |
| 515 | 74.77 | wind | 5.0 | 1440 | > th | dose dependent | rect. | 8 | 16 |
| 547 | 74.82 | wind | 5.0 | 1440 | > th | dose dependent | rect. | 3 | 20 |
| 577 | 74.87 | wind | 7.0 | 4320 | < th | dose independent | rect. | 16 | 11 |
| 582 | 74.88 | wind | 5.0 | 4320 | < th | dose independent | rect. | 14 | 15 |
| 589 | 74.88 | atmosphere | 1000.0 | 4320 | < th | dose dependent | rect. | 10 | 1 |
| 657 | 74.96 | wind | 5.0 | 1440 | < th | dose independent | no | NA | NA |
| 691 | 74.98 | wind | 5.0 | 1440 | > th | dose dependent | rect. | 20 | 23 |
| 694 | 74.99 | wind | 5.0 | 4320 | < th | dose independent | rect. | 17 | 1 |
| 699 | 74.99 | atmosphere | 995.0 | 14400 | > th | dose independent | rect. | 2 | 13 |
| 711 | 75.00 | wind | 7.0 | 4320 | > th | dose independent | rect. | 16 | 11 |
| 721 | 75.01 | atmosphere | 995.0 | 14400 | < th | dose independent | rect. | 23 | 17 |
| 739 | 75.02 | atmosphere | 995.0 | 14400 | > th | dose independent | rect. | 19 | 21 |
| 740 | 75.02 | wind | 5.0 | 1440 | > th | dose dependent | no | NA | NA |
| 757 | 75.05 | atmosphere | 995.0 | 14400 | < th | dose independent | rect. | 3 | 12 |
| 759 | 75.05 | atmosphere | 995.0 | 14400 | > th | dose independent | rect. | 22 | 18 |
| 765 | 75.05 | wind | 5.0 | 1440 | > th | dose dependent | rect. | 22 | 23 |
| 798 | 75.09 | wind | 5.0 | 1440 | > th | dose independent | rect. | 17 | 23 |
| 799 | 75.09 | atmosphere | 995.0 | 14400 | < th | dose dependent | rect. | 3 | 13 |
| 827 | 75.13 | atmosphere | 995.0 | 14400 | > th | dose independent | sin | 5 | NA |
| 855 | 75.16 | atmosphere | 1000.0 | 4320 | > th | dose independent | rect. | 20 | 15 |
| 856 | 75.16 | atmosphere | 1000.0 | 4320 | < th | dose independent | rect. | 20 | 15 |
| 861 | 75.17 | atmosphere | 1000.0 | 4320 | < th | dose independent | rect. | 15 | 1 |
| 874 | 75.18 | atmosphere | 1000.0 | 4320 | > th | dose independent | rect. | 15 | 1 |
| 898 | 75.19 | atmosphere | 995.0 | 14400 | < th | dose independent | sin | 4 | NA |
| 959 | 75.22 | atmosphere | 1000.0 | 4320 | < th | dose independent | sin | 6 | NA |
| 964 | 75.22 | atmosphere | 1000.0 | 4320 | > th | dose independent | rect. | 1 | 10 |
| 966 | 75.22 | atmosphere | 1000.0 | 4320 | > th | dose independent | rect. | 23 | 12 |
| 967 | 75.22 | atmosphere | 1000.0 | 4320 | < th | dose independent | rect. | 23 | 12 |
| 980 | 75.22 | atmosphere | 1000.0 | 4320 | > th | dose independent | rect. | 13 | 22 |
| 990 | 75.23 | atmosphere | 1000.0 | 4320 | < th | dose independent | rect. | 1 | 10 |