BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os10g0516100 Os10g0516100|AK120480
(164 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os10g0516100 Similar to Glycine cleavage system H protein, ... 335 1e-92
AF022731 266 6e-72
Os02g0170100 Glycine cleavage H-protein family protein 197 4e-51
Os06g0667600 Similar to Glycine decarboxylase complex H-pro... 195 1e-50
Os02g0169700 Glycine cleavage H-protein family protein 150 5e-37
>Os10g0516100 Similar to Glycine cleavage system H protein, mitochondrial
precursor
Length = 164
Score = 335 bits (858), Expect = 1e-92, Method: Compositional matrix adjust.
Identities = 164/164 (100%), Positives = 164/164 (100%)
Query: 1 MALRLWASSAANALKISCSGATRAAPAYSISRYFSTVLDGLKYSSSHEWVKNDGSVATIG 60
MALRLWASSAANALKISCSGATRAAPAYSISRYFSTVLDGLKYSSSHEWVKNDGSVATIG
Sbjct: 1 MALRLWASSAANALKISCSGATRAAPAYSISRYFSTVLDGLKYSSSHEWVKNDGSVATIG 60
Query: 61 ITDHAQGHLGEVVFVELPEAGAKVSQGGAFGNVESVKATSDINSPISGEVVEVNDKLSET 120
ITDHAQGHLGEVVFVELPEAGAKVSQGGAFGNVESVKATSDINSPISGEVVEVNDKLSET
Sbjct: 61 ITDHAQGHLGEVVFVELPEAGAKVSQGGAFGNVESVKATSDINSPISGEVVEVNDKLSET 120
Query: 121 PGLINSSPYEDGWMIKVKPSSPSELDALLDPAKYTKHCEEEDAH 164
PGLINSSPYEDGWMIKVKPSSPSELDALLDPAKYTKHCEEEDAH
Sbjct: 121 PGLINSSPYEDGWMIKVKPSSPSELDALLDPAKYTKHCEEEDAH 164
>AF022731
Length = 162
Score = 266 bits (679), Expect = 6e-72, Method: Compositional matrix adjust.
Identities = 132/141 (93%), Positives = 135/141 (95%)
Query: 1 MALRLWASSAANALKISCSGATRAAPAYSISRYFSTVLDGLKYSSSHEWVKNDGSVATIG 60
MALRLWASSAANALKISCSGATRAAPAYSISRYFSTVLDGLK SSSHEWVKNDGSVATIG
Sbjct: 1 MALRLWASSAANALKISCSGATRAAPAYSISRYFSTVLDGLKCSSSHEWVKNDGSVATIG 60
Query: 61 ITDHAQGHLGEVVFVELPEAGAKVSQGGAFGNVESVKATSDINSPISGEVVEVNDKLSET 120
ITDHAQGHLG VVFVELPEAGAKVSQG AF NVESVK TSDINSPISGEVVEVNDKLSET
Sbjct: 61 ITDHAQGHLGXVVFVELPEAGAKVSQGSAFCNVESVKGTSDINSPISGEVVEVNDKLSET 120
Query: 121 PGLINSSPYEDGWMIKVKPSS 141
P LINSSPYEDGWMI+VKP++
Sbjct: 121 PRLINSSPYEDGWMIQVKPNT 141
>Os02g0170100 Glycine cleavage H-protein family protein
Length = 158
Score = 197 bits (500), Expect = 4e-51, Method: Compositional matrix adjust.
Identities = 100/159 (62%), Positives = 119/159 (74%), Gaps = 11/159 (6%)
Query: 5 LWASSAANALKISCSGATRAAPAYSISRYFSTVLDGLKYSSSHEWVKNDGSVATIGITDH 64
LWAS AA+ LKIS + R FSTVL LKY+ +HEWVK +G AT+GITDH
Sbjct: 9 LWASRAASYLKIS-----------TFPRAFSTVLKDLKYADTHEWVKVEGDSATVGITDH 57
Query: 65 AQGHLGEVVFVELPEAGAKVSQGGAFGNVESVKATSDINSPISGEVVEVNDKLSETPGLI 124
AQ HLG+VV+VELPE G+ VSQG FG VESVKATSDI SP+SGEVV VND L + PGL+
Sbjct: 58 AQHHLGDVVYVELPEVGSSVSQGKNFGAVESVKATSDIYSPVSGEVVAVNDGLGDEPGLV 117
Query: 125 NSSPYEDGWMIKVKPSSPSELDALLDPAKYTKHCEEEDA 163
N+SPYE GW+IKVK S EL++L+D AKY+K CEEED+
Sbjct: 118 NTSPYESGWIIKVKVSDSGELNSLMDDAKYSKFCEEEDS 156
>Os06g0667600 Similar to Glycine decarboxylase complex H-protein
Length = 160
Score = 195 bits (496), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 92/135 (68%), Positives = 109/135 (80%)
Query: 29 SISRYFSTVLDGLKYSSSHEWVKNDGSVATIGITDHAQGHLGEVVFVELPEAGAKVSQGG 88
S R FSTVL LKY+ +HEWVK +G ATIG+TDHAQ HLG+VV+VELPE G+ VSQG
Sbjct: 24 SFPRAFSTVLKDLKYADTHEWVKVEGDSATIGVTDHAQDHLGDVVYVELPEVGSTVSQGT 83
Query: 89 AFGNVESVKATSDINSPISGEVVEVNDKLSETPGLINSSPYEDGWMIKVKPSSPSELDAL 148
FG VESVKATSDIN+P+SGE+++VND+LSE PG IN SPYE GW+IKVK S PSEL++L
Sbjct: 84 NFGAVESVKATSDINAPVSGEIIQVNDELSEKPGFINGSPYEKGWIIKVKISDPSELNSL 143
Query: 149 LDPAKYTKHCEEEDA 163
+D KY K CEEED
Sbjct: 144 MDDEKYKKFCEEEDG 158
>Os02g0169700 Glycine cleavage H-protein family protein
Length = 146
Score = 150 bits (378), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 76/127 (59%), Positives = 92/127 (72%), Gaps = 1/127 (0%)
Query: 36 TVLDGLKYSSSHEWVKNDGSVATIGITDHAQGHLGEVVFVELPEAGAKVSQGGAFGNVES 95
VL LKYS +HEWV +G ATIGI+DHAQ HLG V VELPE G VSQG FG V S
Sbjct: 16 NVLKDLKYSETHEWVSVEGDYATIGISDHAQDHLGYVASVELPEVGQSVSQGNKFGVVVS 75
Query: 96 VKATSD-INSPISGEVVEVNDKLSETPGLINSSPYEDGWMIKVKPSSPSELDALLDPAKY 154
VK T+ INSP+SGEVVEVND+LS+ PGL+N+ PYE GW+I VK S EL++L++ Y
Sbjct: 76 VKGTTRGINSPVSGEVVEVNDQLSDLPGLVNARPYETGWIIVVKISDSGELNSLMNDEDY 135
Query: 155 TKHCEEE 161
+K C+ E
Sbjct: 136 SKFCKGE 142
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.309 0.126 0.366
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 5,847,391
Number of extensions: 230333
Number of successful extensions: 456
Number of sequences better than 1.0e-10: 5
Number of HSP's gapped: 454
Number of HSP's successfully gapped: 5
Length of query: 164
Length of database: 17,035,801
Length adjustment: 93
Effective length of query: 71
Effective length of database: 12,179,899
Effective search space: 864772829
Effective search space used: 864772829
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 152 (63.2 bits)