Os02g0169700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Glycine cleavage H-protein family protein.
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Os02g0169700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Glycine cleavage H-protein family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = wind,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 251.41 | 0.745 | 3.44 | -0.0496 | 0.489 | -0.268 | 0.604 | -4.5 | 0.22 | 21.8 | 5.121 | 4383 | -- | -- |
| 260.98 | 0.758 | 3.55 | -0.0685 | 0.512 | 0.286 | 0.62 | -- | 0.101 | 22.6 | 5.121 | 4383 | -- | -- |
| 252.69 | 0.74 | 3.44 | -0.0737 | 0.49 | -0.283 | -- | -4.56 | 0.222 | 21.4 | 5.159 | 4384 | -- | -- |
| 260.04 | 0.751 | 3.54 | -0.0122 | 0.464 | 0.398 | -- | -- | 0.097 | 21.8 | 8.274 | 4384 | -- | -- |
| 266.74 | 0.761 | 3.42 | -0.0927 | -- | -0.375 | -- | -4.8 | 0.225 | -- | 5.2 | 4377 | -- | -- |
| 264.18 | 0.762 | 3.55 | -0.136 | 0.499 | -- | 0.641 | -- | 0.102 | 21.9 | -- | -- | -- | -- |
| 265.67 | 0.763 | 3.55 | -0.159 | 0.501 | -- | -- | -- | 0.102 | 21.6 | -- | -- | -- | -- |
| 275.13 | 0.773 | 3.56 | 0.0147 | -- | 0.468 | -- | -- | 0.00253 | -- | 8.546 | 5092 | -- | -- |
| 259.3 | 0.75 | 3.57 | -- | 0.537 | 0.515 | -- | -- | 0.0789 | 21.7 | 8.5 | 4384 | -- | -- |
| 280.52 | 0.783 | 3.54 | -0.156 | -- | -- | -- | -- | 0.101 | -- | -- | -- | -- | -- |
| 266.34 | 0.763 | 3.55 | -- | 0.501 | -- | -- | -- | 0.12 | 21.5 | -- | -- | -- | -- |
| 275.13 | 0.773 | 3.56 | -- | -- | 0.464 | -- | -- | 0.00202 | -- | 8.563 | 5097 | -- | -- |
| 281.16 | 0.783 | 3.53 | -- | -- | -- | -- | -- | 0.118 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 247.49 | wind | 3 | 720 | > th | dose dependent | rect. | 12 | 2 |
| 3 | 248.10 | wind | 5 | 720 | > th | dose independent | rect. | 12 | 2 |
| 12 | 249.91 | wind | 3 | 720 | > th | dose dependent | rect. | 12 | 6 |
| 17 | 250.25 | wind | 5 | 720 | > th | dose independent | rect. | 12 | 6 |
| 21 | 250.55 | temperature | 30 | 90 | > th | dose independent | rect. | 10 | 1 |
| 23 | 250.65 | radiation | 20 | 14400 | > th | dose independent | rect. | 16 | 1 |
| 43 | 250.85 | wind | 5 | 4320 | > th | dose independent | rect. | 16 | 23 |
| 51 | 251.02 | wind | 5 | 4320 | < th | dose independent | rect. | 16 | 23 |
| 55 | 251.06 | humidity | 90 | 4320 | < th | dose dependent | rect. | 23 | 1 |
| 57 | 251.10 | wind | 5 | 720 | < th | dose independent | rect. | 11 | 10 |
| 59 | 251.16 | wind | 5 | 4320 | > th | dose independent | rect. | 11 | 20 |
| 65 | 251.25 | wind | 5 | 4320 | < th | dose independent | rect. | 11 | 20 |
| 76 | 251.33 | wind | 3 | 4320 | > th | dose dependent | rect. | 12 | 18 |
| 79 | 251.36 | humidity | 90 | 4320 | < th | dose dependent | rect. | 21 | 4 |
| 84 | 251.40 | wind | 5 | 720 | > th | dose independent | rect. | 11 | 10 |
| 109 | 251.54 | wind | 5 | 4320 | > th | dose independent | rect. | 19 | 23 |
| 110 | 251.54 | wind | 3 | 4320 | > th | dose dependent | rect. | 16 | 13 |
| 155 | 251.71 | wind | 5 | 4320 | > th | dose independent | no | NA | NA |
| 156 | 251.71 | wind | 5 | 1440 | < th | dose independent | rect. | 11 | 4 |
| 160 | 251.73 | wind | 5 | 4320 | < th | dose independent | sin | 14 | NA |
| 163 | 251.74 | wind | 5 | 1440 | < th | dose independent | rect. | 12 | 1 |
| 164 | 251.74 | wind | 5 | 4320 | < th | dose independent | rect. | 16 | 13 |
| 168 | 251.76 | wind | 5 | 4320 | > th | dose independent | rect. | 2 | 23 |
| 174 | 251.79 | wind | 3 | 4320 | > th | dose dependent | sin | 14 | NA |
| 178 | 251.81 | wind | 5 | 4320 | > th | dose independent | sin | 14 | NA |
| 179 | 251.81 | wind | 5 | 4320 | > th | dose independent | rect. | 22 | 23 |
| 187 | 251.85 | wind | 5 | 4320 | < th | dose independent | rect. | 19 | 23 |
| 194 | 251.87 | wind | 5 | 4320 | > th | dose independent | rect. | 4 | 23 |
| 201 | 251.89 | wind | 5 | 720 | < th | dose independent | rect. | 10 | 13 |
| 224 | 251.97 | wind | 5 | 4320 | < th | dose independent | no | NA | NA |
| 240 | 252.01 | wind | 9 | 1440 | < th | dose dependent | rect. | 12 | 2 |
| 241 | 252.02 | wind | 5 | 4320 | > th | dose independent | rect. | 16 | 13 |
| 253 | 252.04 | wind | 5 | 4320 | < th | dose independent | rect. | 2 | 23 |
| 260 | 252.07 | wind | 5 | 720 | < th | dose independent | sin | 19 | NA |
| 264 | 252.07 | wind | 7 | 1440 | < th | dose dependent | rect. | 11 | 4 |
| 272 | 252.08 | wind | 5 | 4320 | > th | dose dependent | rect. | 19 | 22 |
| 279 | 252.10 | wind | 5 | 4320 | < th | dose independent | rect. | 22 | 23 |
| 306 | 252.15 | wind | 5 | 4320 | < th | dose independent | rect. | 4 | 23 |
| 308 | 252.15 | wind | 7 | 4320 | > th | dose dependent | rect. | 12 | 3 |
| 319 | 252.18 | wind | 5 | 720 | < th | dose independent | rect. | 12 | 7 |
| 321 | 252.18 | wind | 5 | 1440 | < th | dose independent | rect. | 9 | 9 |
| 337 | 252.19 | wind | 5 | 4320 | > th | dose dependent | rect. | 16 | 23 |
| 355 | 252.24 | humidity | 80 | 4320 | > th | dose independent | rect. | 21 | 4 |
| 369 | 252.27 | wind | 5 | 4320 | > th | dose dependent | rect. | 2 | 23 |
| 401 | 252.34 | wind | 5 | 4320 | > th | dose dependent | no | NA | NA |
| 426 | 252.38 | wind | 5 | 4320 | > th | dose dependent | rect. | 23 | 23 |
| 446 | 252.43 | wind | 5 | 4320 | > th | dose dependent | rect. | 11 | 14 |
| 483 | 252.49 | wind | 5 | 720 | > th | dose independent | sin | 20 | NA |
| 536 | 252.57 | humidity | 90 | 30 | > th | dose independent | rect. | 3 | 21 |
| 553 | 252.61 | wind | 5 | 1440 | < th | dose independent | rect. | 23 | 19 |
| 579 | 252.65 | humidity | 50 | 4320 | > th | dose dependent | rect. | 23 | 1 |
| 620 | 252.71 | humidity | 90 | 90 | < th | dose independent | rect. | 6 | 21 |
| 635 | 252.74 | humidity | 80 | 4320 | < th | dose independent | rect. | 20 | 5 |
| 636 | 252.74 | wind | 5 | 720 | < th | dose independent | rect. | 9 | 17 |
| 655 | 252.77 | wind | 5 | 1440 | < th | dose independent | sin | 23 | NA |
| 666 | 252.78 | humidity | 90 | 4320 | < th | dose dependent | rect. | 20 | 9 |
| 705 | 252.82 | wind | 9 | 720 | < th | dose dependent | rect. | 11 | 10 |
| 711 | 252.83 | humidity | 70 | 4320 | > th | dose dependent | rect. | 21 | 4 |
| 736 | 252.87 | wind | 5 | 1440 | > th | dose independent | sin | 23 | NA |
| 899 | 253.06 | wind | 5 | 720 | < th | dose independent | rect. | 15 | 3 |
| 935 | 253.10 | humidity | 90 | 90 | > th | dose independent | rect. | 5 | 23 |
| 954 | 253.12 | wind | 3 | 270 | > th | dose dependent | rect. | 21 | 1 |