Os06g0667600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Glycine decarboxylase complex H-protein.
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Os06g0667600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Glycine decarboxylase complex H-protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = atmosphere,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 72.5 | 0.4 | 7.41 | 0.355 | 0.55 | -0.534 | -0.486 | -0.089 | 0.342 | 0.983 | 1010 | 3468 | -- | -- |
| 72.51 | 0.397 | 7.41 | 0.343 | 0.55 | -0.539 | -0.477 | -- | 0.339 | 0.973 | 1010 | 3433 | -- | -- |
| 73.46 | 0.399 | 7.41 | 0.365 | 0.552 | -0.55 | -- | -0.0467 | 0.341 | 0.842 | 1011 | 3455 | -- | -- |
| 73.46 | 0.399 | 7.41 | 0.36 | 0.551 | -0.548 | -- | -- | 0.342 | 0.843 | 1011 | 3440 | -- | -- |
| 92.34 | 0.448 | 7.4 | 0.373 | -- | -0.581 | -- | -0.0446 | 0.346 | -- | 1010 | 3462 | -- | -- |
| 78.39 | 0.415 | 7.39 | 0.436 | 0.566 | -- | -0.515 | -- | 0.417 | 1.11 | -- | -- | -- | -- |
| 79.47 | 0.417 | 7.39 | 0.455 | 0.566 | -- | -- | -- | 0.42 | 0.969 | -- | -- | -- | -- |
| 92.35 | 0.448 | 7.4 | 0.366 | -- | -0.582 | -- | -- | 0.344 | -- | 1010 | 3453 | -- | -- |
| 75.75 | 0.405 | 7.42 | -- | 0.566 | -0.526 | -- | -- | 0.285 | 0.936 | 1013 | 6462 | -- | -- |
| 99.41 | 0.466 | 7.38 | 0.476 | -- | -- | -- | -- | 0.431 | -- | -- | -- | -- | -- |
| 84.92 | 0.431 | 7.4 | -- | 0.573 | -- | -- | -- | 0.369 | 1 | -- | -- | -- | -- |
| 95.67 | 0.456 | 7.41 | -- | -- | -0.65 | -- | -- | 0.298 | -- | 1010 | 3502 | -- | -- |
| 105.39 | 0.479 | 7.39 | -- | -- | -- | -- | -- | 0.378 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 70.68 | humidity | 90.0 | 1440 | < th | dose independent | rect. | 15 | 3 |
| 5 | 71.34 | humidity | 90.0 | 1440 | > th | dose independent | rect. | 15 | 3 |
| 6 | 71.43 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 20 | 4 |
| 10 | 71.55 | humidity | 90.0 | 1440 | < th | dose independent | rect. | 11 | 8 |
| 16 | 71.71 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 20 | 3 |
| 18 | 71.71 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 20 | 3 |
| 19 | 71.73 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 20 | 3 |
| 31 | 71.85 | humidity | 90.0 | 1440 | > th | dose dependent | rect. | 15 | 3 |
| 40 | 71.91 | humidity | 90.0 | 1440 | > th | dose independent | rect. | 17 | 1 |
| 47 | 71.98 | humidity | 90.0 | 1440 | > th | dose independent | rect. | 11 | 9 |
| 64 | 72.14 | humidity | 90.0 | 1440 | > th | dose dependent | rect. | 16 | 1 |
| 80 | 72.30 | humidity | 90.0 | 1440 | > th | dose independent | rect. | 10 | 12 |
| 82 | 72.32 | humidity | 90.0 | 1440 | > th | dose dependent | rect. | 11 | 9 |
| 83 | 72.34 | humidity | 80.0 | 14400 | > th | dose independent | rect. | 3 | 1 |
| 103 | 72.44 | humidity | 90.0 | 14400 | < th | dose dependent | rect. | 3 | 1 |
| 106 | 72.46 | radiation | 10.0 | 14400 | < th | dose independent | rect. | 9 | 4 |
| 108 | 72.50 | temperature | 20.0 | 1440 | < th | dose dependent | rect. | 13 | 4 |
| 111 | 72.51 | temperature | 20.0 | 1440 | < th | dose dependent | rect. | 15 | 2 |
| 115 | 72.52 | humidity | 70.0 | 14400 | < th | dose independent | rect. | 20 | 11 |
| 123 | 72.57 | humidity | 70.0 | 14400 | < th | dose dependent | rect. | 20 | 11 |
| 124 | 72.57 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 8 | 16 |
| 125 | 72.57 | temperature | 15.0 | 10 | > th | dose dependent | rect. | 9 | 20 |
| 135 | 72.60 | humidity | 70.0 | 14400 | < th | dose independent | rect. | 21 | 1 |
| 151 | 72.63 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 17 | 6 |
| 153 | 72.63 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 17 | 6 |
| 157 | 72.64 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 17 | 6 |
| 173 | 72.67 | atmosphere | 1010.0 | 4320 | > th | dose dependent | rect. | 9 | 1 |
| 182 | 72.70 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 9 | 15 |
| 183 | 72.70 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 9 | 15 |
| 186 | 72.70 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 9 | 15 |
| 188 | 72.71 | humidity | 70.0 | 14400 | > th | dose independent | rect. | 20 | 1 |
| 191 | 72.71 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 14 | 10 |
| 199 | 72.72 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 14 | 10 |
| 203 | 72.72 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 9 | 9 |
| 204 | 72.72 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 14 | 10 |
| 215 | 72.73 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 14 | 9 |
| 222 | 72.73 | temperature | 15.0 | 10 | > th | dose dependent | rect. | 9 | 22 |
| 227 | 72.74 | humidity | 70.0 | 14400 | > th | dose independent | rect. | 20 | 11 |
| 228 | 72.74 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 12 | 12 |
| 229 | 72.74 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 12 | 12 |
| 233 | 72.74 | humidity | 70.0 | 14400 | < th | dose dependent | rect. | 20 | 2 |
| 244 | 72.74 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 12 | 12 |
| 257 | 72.75 | temperature | 25.0 | 1440 | < th | dose dependent | rect. | 14 | 8 |
| 321 | 72.79 | humidity | 90.0 | 1440 | > th | dose dependent | rect. | 9 | 13 |
| 338 | 72.81 | precipitation | 0.1 | 43200 | > th | dose dependent | sin | 19 | NA |
| 386 | 72.85 | humidity | 60.0 | 4320 | < th | dose independent | rect. | 8 | 4 |
| 407 | 72.85 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 17 | 8 |
| 453 | 72.89 | precipitation | 0.1 | 43200 | < th | dose independent | sin | 18 | NA |
| 455 | 72.89 | precipitation | 0.1 | 43200 | < th | dose dependent | sin | 18 | NA |
| 465 | 72.90 | precipitation | 0.1 | 43200 | > th | dose independent | sin | 18 | NA |
| 502 | 72.93 | radiation | 30.0 | 14400 | < th | dose independent | rect. | 12 | 1 |
| 503 | 72.93 | humidity | 70.0 | 14400 | > th | dose independent | rect. | 20 | 6 |
| 508 | 72.94 | radiation | 30.0 | 14400 | > th | dose independent | rect. | 12 | 1 |
| 531 | 72.95 | humidity | 60.0 | 4320 | < th | dose dependent | rect. | 10 | 2 |
| 553 | 72.97 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 14 | 4 |
| 574 | 72.99 | humidity | 50.0 | 4320 | > th | dose independent | rect. | 8 | 2 |
| 601 | 73.01 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 14 | 4 |
| 602 | 73.01 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 12 | 6 |
| 603 | 73.01 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 12 | 6 |
| 607 | 73.01 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 14 | 4 |
| 610 | 73.01 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 12 | 6 |
| 631 | 73.02 | atmosphere | 1010.0 | 4320 | > th | dose dependent | rect. | 11 | 1 |
| 713 | 73.09 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 14 | 5 |
| 727 | 73.10 | wind | 1.0 | 270 | < th | dose dependent | rect. | 8 | 18 |
| 729 | 73.11 | humidity | 80.0 | 14400 | < th | dose independent | rect. | 3 | 1 |
| 759 | 73.12 | humidity | 60.0 | 4320 | < th | dose dependent | rect. | 18 | 18 |
| 788 | 73.15 | humidity | 60.0 | 14400 | < th | dose dependent | rect. | 18 | 1 |
| 789 | 73.15 | wind | 1.0 | 270 | < th | dose dependent | rect. | 22 | 4 |
| 803 | 73.16 | temperature | 20.0 | 4320 | < th | dose dependent | rect. | 24 | 2 |
| 832 | 73.18 | humidity | 60.0 | 4320 | > th | dose independent | rect. | 4 | 8 |
| 835 | 73.18 | humidity | 60.0 | 4320 | > th | dose independent | rect. | 2 | 10 |
| 838 | 73.18 | humidity | 60.0 | 4320 | > th | dose independent | rect. | 23 | 13 |
| 877 | 73.19 | humidity | 60.0 | 43200 | < th | dose dependent | rect. | 8 | 1 |
| 898 | 73.20 | atmosphere | 1010.0 | 4320 | > th | dose dependent | rect. | 13 | 1 |
| 915 | 73.20 | wind | 1.0 | 270 | < th | dose dependent | rect. | 10 | 16 |
| 920 | 73.21 | atmosphere | 995.0 | 43200 | > th | dose independent | rect. | 16 | 6 |
| 935 | 73.21 | radiation | 10.0 | 14400 | < th | dose independent | rect. | 9 | 18 |
| 956 | 73.22 | atmosphere | 1010.0 | 4320 | > th | dose dependent | sin | 2 | NA |
| 958 | 73.22 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 15 | 2 |
| 967 | 73.22 | temperature | 15.0 | 4320 | < th | dose dependent | rect. | 1 | 21 |
| 983 | 73.24 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 16 | 1 |
| 984 | 73.24 | atmosphere | 995.0 | 43200 | < th | dose independent | rect. | 17 | 5 |
| 1000 | 73.24 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 9 | 17 |