BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os06g0667600 Os06g0667600|AK071621
(160 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT2G35120.1 | chr2:14805913-14807274 REVERSE LENGTH=157 219 4e-58
AT2G35370.1 | chr2:14891239-14892050 FORWARD LENGTH=166 194 2e-50
AT1G32470.1 | chr1:11739479-11740246 REVERSE LENGTH=167 194 2e-50
>AT2G35120.1 | chr2:14805913-14807274 REVERSE LENGTH=157
Length = 156
Score = 219 bits (559), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 102/144 (70%), Positives = 124/144 (86%), Gaps = 1/144 (0%)
Query: 18 SYLRISSFPRAFSTV-LKDLKYADTHEWVKVEGDSATIGVTDHAQDHLGDVVYVELPEVG 76
S+LRIS R FS+V LKDLKYAD+HEWVK++G+ AT G+TDHAQDHLGDVVYVELP+VG
Sbjct: 13 SHLRISVAQRGFSSVVLKDLKYADSHEWVKIDGNKATFGITDHAQDHLGDVVYVELPDVG 72
Query: 77 STVSQGTNFGAVESVKATSDINAPVSGEIIQVNDELSEKPGFINGSPYEKGWIIKVKISD 136
+VSQG +FGAVESVKATSDIN+PVSG++++VN+EL+E PG +N SPYE+GWIIKV++SD
Sbjct: 73 HSVSQGKSFGAVESVKATSDINSPVSGKVVEVNEELTESPGLVNSSPYEQGWIIKVELSD 132
Query: 137 PSELNSLMDDEKYKKFCEEEDGKH 160
E LMD +KY KFCEEED KH
Sbjct: 133 AGEAEKLMDSDKYSKFCEEEDAKH 156
>AT2G35370.1 | chr2:14891239-14892050 FORWARD LENGTH=166
Length = 165
Score = 194 bits (492), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 92/137 (67%), Positives = 112/137 (81%)
Query: 24 SFPRAFSTVLKDLKYADTHEWVKVEGDSATIGVTDHAQDHLGDVVYVELPEVGSTVSQGT 83
SF R FSTVL+ LKYA++HEWVK EG ATIG+T HAQDHLG+VV+VELPE ++VS+
Sbjct: 29 SFSRCFSTVLEGLKYANSHEWVKHEGSVATIGITAHAQDHLGEVVFVELPEDNTSVSKEK 88
Query: 84 NFGAVESVKATSDINAPVSGEIIQVNDELSEKPGFINGSPYEKGWIIKVKISDPSELNSL 143
+FGAVESVKATS+I +P+SGEII+VN +L+E PG IN SPYE GW+IKVK S P+EL SL
Sbjct: 89 SFGAVESVKATSEILSPISGEIIEVNKKLTESPGLINSSPYEDGWMIKVKPSSPAELESL 148
Query: 144 MDDEKYKKFCEEEDGKH 160
M ++Y KFCEEED H
Sbjct: 149 MGPKEYTKFCEEEDAAH 165
>AT1G32470.1 | chr1:11739479-11740246 REVERSE LENGTH=167
Length = 166
Score = 194 bits (492), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 90/137 (65%), Positives = 112/137 (81%)
Query: 24 SFPRAFSTVLKDLKYADTHEWVKVEGDSATIGVTDHAQDHLGDVVYVELPEVGSTVSQGT 83
S R FS+VL+ LKYA++HEWVK EG ATIG+TDHAQDHLG+VV+VELPE S+VS+
Sbjct: 30 SISRCFSSVLEGLKYANSHEWVKHEGSVATIGITDHAQDHLGEVVFVELPEANSSVSKEK 89
Query: 84 NFGAVESVKATSDINAPVSGEIIQVNDELSEKPGFINGSPYEKGWIIKVKISDPSELNSL 143
+FGAVESVKATS+I +P+SGE+I+VN +L+E PG IN SPYE GW+IKVK S P+EL +L
Sbjct: 90 SFGAVESVKATSEILSPISGEVIEVNTKLTESPGLINSSPYEDGWMIKVKPSSPAELEAL 149
Query: 144 MDDEKYKKFCEEEDGKH 160
M ++Y KFCEEED H
Sbjct: 150 MGPKEYTKFCEEEDAAH 166
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.311 0.131 0.377
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 3,340,654
Number of extensions: 132758
Number of successful extensions: 286
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 286
Number of HSP's successfully gapped: 3
Length of query: 160
Length of database: 11,106,569
Length adjustment: 91
Effective length of query: 69
Effective length of database: 8,611,713
Effective search space: 594208197
Effective search space used: 594208197
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 107 (45.8 bits)