Os02g0170100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Glycine cleavage H-protein family protein.
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Os02g0170100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Glycine cleavage H-protein family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 72.96 | 0.401 | 10.2 | -1.96 | 0.254 | -0.21 | 0.845 | -4 | -0.469 | 22.8 | 9.706 | 641 | -- | -- |
| 74.73 | 0.403 | 10.2 | -1.27 | 0.159 | -0.844 | 0.207 | -- | -0.349 | 22.2 | 28.4 | 99 | -- | -- |
| 73.14 | 0.398 | 10.2 | -1.85 | 0.203 | -0.273 | -- | -3.64 | -0.425 | 23 | 2.122 | 287 | -- | -- |
| 74.86 | 0.403 | 10.1 | -1.28 | 0.17 | -0.845 | -- | -- | -0.345 | 21.2 | 28.25 | 98 | -- | -- |
| 75.39 | 0.404 | 10.2 | -1.81 | -- | -0.348 | -- | -3.61 | -0.415 | -- | 8.271 | 213 | -- | -- |
| 83.87 | 0.429 | 10.1 | -1.35 | 0.236 | -- | 0.291 | -- | -0.327 | 1.06 | -- | -- | -- | -- |
| 84.23 | 0.43 | 10.1 | -1.36 | 0.236 | -- | -- | -- | -0.329 | 1.06 | -- | -- | -- | -- |
| 75.57 | 0.407 | 10.1 | -1.26 | -- | -0.801 | -- | -- | -0.319 | -- | 26.9 | 18 | -- | -- |
| 115.91 | 0.504 | 10.1 | -- | 0.169 | -1.11 | -- | -- | -0.181 | 17.7 | 27.11 | 95 | -- | -- |
| 87.69 | 0.438 | 10.1 | -1.35 | -- | -- | -- | -- | -0.324 | -- | -- | -- | -- | -- |
| 133.22 | 0.54 | 10.1 | -- | 0.214 | -- | -- | -- | -0.177 | 0.796 | -- | -- | -- | -- |
| 116.93 | 0.504 | 10.1 | -- | -- | -1.01 | -- | -- | -0.185 | -- | 26.9 | 17 | -- | -- |
| 136.08 | 0.544 | 10.1 | -- | -- | -- | -- | -- | -0.174 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 69.09 | wind | 1.0 | 14400 | > th | dose independent | rect. | 2 | 1 |
| 2 | 70.02 | humidity | 90.0 | 14400 | < th | dose independent | rect. | 23 | 7 |
| 5 | 70.38 | humidity | 90.0 | 14400 | > th | dose independent | rect. | 24 | 7 |
| 7 | 70.49 | humidity | 90.0 | 14400 | > th | dose independent | rect. | 24 | 3 |
| 8 | 70.57 | wind | 1.0 | 14400 | < th | dose independent | rect. | 2 | 1 |
| 12 | 70.81 | humidity | 90.0 | 14400 | > th | dose independent | rect. | 1 | 1 |
| 24 | 71.18 | humidity | 90.0 | 14400 | < th | dose independent | rect. | 24 | 2 |
| 31 | 71.38 | humidity | 80.0 | 14400 | > th | dose dependent | rect. | 1 | 1 |
| 35 | 71.53 | humidity | 80.0 | 14400 | > th | dose dependent | rect. | 24 | 6 |
| 38 | 71.59 | humidity | 80.0 | 14400 | > th | dose dependent | rect. | 24 | 3 |
| 39 | 71.64 | humidity | 90.0 | 14400 | > th | dose independent | rect. | 5 | 1 |
| 48 | 71.91 | temperature | 15.0 | 270 | > th | dose dependent | rect. | 13 | 22 |
| 53 | 72.01 | temperature | 10.0 | 10 | > th | dose dependent | rect. | 15 | 23 |
| 56 | 72.02 | temperature | 15.0 | 90 | > th | dose dependent | rect. | 19 | 23 |
| 79 | 72.36 | temperature | 30.0 | 4320 | < th | dose dependent | rect. | 21 | 1 |
| 81 | 72.37 | temperature | 10.0 | 4320 | > th | dose dependent | rect. | 21 | 1 |
| 84 | 72.40 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 5 | 1 |
| 86 | 72.44 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 5 | 22 |
| 87 | 72.49 | humidity | 50.0 | 14400 | > th | dose dependent | rect. | 1 | 2 |
| 101 | 72.55 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 14 | 1 |
| 102 | 72.55 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 14 | 1 |
| 103 | 72.57 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 14 | 1 |
| 104 | 72.57 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 14 | 1 |
| 114 | 72.63 | temperature | 15.0 | 30 | > th | dose dependent | rect. | 5 | 23 |
| 131 | 72.72 | atmosphere | 995.0 | 43200 | > th | dose independent | rect. | 24 | 1 |
| 152 | 72.78 | temperature | 15.0 | 270 | > th | dose dependent | rect. | 16 | 23 |
| 153 | 72.79 | atmosphere | 995.0 | 43200 | > th | dose independent | rect. | 5 | 1 |
| 161 | 72.81 | radiation | 1.0 | 4320 | < th | dose dependent | rect. | 18 | 11 |
| 169 | 72.82 | atmosphere | 995.0 | 43200 | > th | dose independent | rect. | 24 | 6 |
| 188 | 72.84 | temperature | 15.0 | 10 | > th | dose dependent | rect. | 13 | 23 |
| 191 | 72.85 | atmosphere | 995.0 | 43200 | < th | dose independent | rect. | 1 | 1 |
| 223 | 72.85 | atmosphere | 995.0 | 43200 | > th | dose independent | rect. | 20 | 10 |
| 225 | 72.85 | atmosphere | 995.0 | 43200 | < th | dose dependent | rect. | 1 | 1 |
| 267 | 72.86 | atmosphere | 995.0 | 43200 | > th | dose independent | rect. | 20 | 5 |
| 349 | 72.88 | atmosphere | 995.0 | 43200 | > th | dose independent | rect. | 20 | 2 |
| 358 | 72.88 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 3 | 4 |
| 379 | 72.91 | atmosphere | 995.0 | 43200 | < th | dose independent | rect. | 21 | 1 |
| 394 | 72.91 | atmosphere | 995.0 | 43200 | < th | dose dependent | rect. | 21 | 1 |
| 424 | 72.92 | radiation | 1.0 | 4320 | < th | dose dependent | rect. | 18 | 1 |
| 433 | 72.93 | wind | 1.0 | 43200 | < th | dose dependent | rect. | 2 | 1 |
| 436 | 72.93 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 2 | 23 |
| 438 | 72.93 | temperature | 10.0 | 10 | > th | dose dependent | rect. | 21 | 23 |
| 439 | 72.94 | radiation | 1.0 | 4320 | < th | dose dependent | rect. | 18 | 3 |
| 442 | 72.94 | radiation | 1.0 | 4320 | < th | dose dependent | rect. | 18 | 7 |
| 476 | 73.00 | wind | 1.0 | 43200 | < th | dose independent | rect. | 2 | 6 |
| 491 | 73.02 | wind | 1.0 | 43200 | > th | dose independent | rect. | 2 | 4 |
| 520 | 73.08 | temperature | 30.0 | 720 | < th | dose dependent | rect. | 3 | 21 |
| 522 | 73.09 | temperature | 10.0 | 720 | > th | dose dependent | no | NA | NA |
| 581 | 73.17 | temperature | 10.0 | 10 | > th | dose dependent | rect. | 23 | 23 |
| 633 | 73.27 | temperature | 30.0 | 270 | > th | dose independent | rect. | 9 | 7 |
| 652 | 73.29 | temperature | 15.0 | 10 | > th | dose dependent | rect. | 11 | 23 |
| 670 | 73.32 | temperature | 20.0 | 270 | > th | dose dependent | rect. | 15 | 18 |
| 689 | 73.33 | temperature | 10.0 | 10 | > th | dose dependent | no | NA | NA |
| 704 | 73.35 | humidity | 60.0 | 43200 | < th | dose independent | rect. | 10 | 1 |
| 711 | 73.36 | temperature | 30.0 | 270 | < th | dose independent | rect. | 6 | 13 |
| 717 | 73.37 | wind | 1.0 | 43200 | > th | dose independent | rect. | 2 | 6 |
| 740 | 73.39 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 9 | 18 |
| 767 | 73.42 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 17 | 2 |
| 797 | 73.45 | radiation | 1.0 | 4320 | < th | dose independent | rect. | 18 | 1 |
| 805 | 73.45 | temperature | 15.0 | 1440 | > th | dose dependent | rect. | 17 | 20 |
| 820 | 73.47 | radiation | 1.0 | 4320 | < th | dose independent | rect. | 18 | 7 |
| 830 | 73.47 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 11 | 16 |
| 844 | 73.48 | radiation | 1.0 | 14400 | < th | dose dependent | rect. | 20 | 9 |
| 860 | 73.50 | radiation | 1.0 | 4320 | < th | dose independent | rect. | 18 | 3 |
| 866 | 73.50 | radiation | 1.0 | 14400 | < th | dose dependent | rect. | 23 | 6 |
| 907 | 73.52 | temperature | 10.0 | 4320 | > th | dose dependent | sin | 14 | NA |
| 923 | 73.53 | radiation | 40.0 | 43200 | < th | dose independent | rect. | 16 | 3 |
| 934 | 73.53 | temperature | 30.0 | 1440 | < th | dose dependent | rect. | 16 | 20 |
| 952 | 73.54 | temperature | 10.0 | 4320 | > th | dose dependent | rect. | 19 | 17 |
| 953 | 73.54 | radiation | 1.0 | 4320 | < th | dose dependent | rect. | 17 | 17 |
| 990 | 73.56 | temperature | 20.0 | 1440 | > th | dose dependent | sin | 16 | NA |