BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os02g0170100 Os02g0170100|AK058912
(158 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT2G35120.1 | chr2:14805913-14807274 REVERSE LENGTH=157 216 3e-57
AT1G32470.1 | chr1:11739479-11740246 REVERSE LENGTH=167 189 6e-49
AT2G35370.1 | chr2:14891239-14892050 FORWARD LENGTH=166 189 8e-49
>AT2G35120.1 | chr2:14805913-14807274 REVERSE LENGTH=157
Length = 156
Score = 216 bits (551), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 107/144 (74%), Positives = 124/144 (86%), Gaps = 1/144 (0%)
Query: 16 SYLKISTFPRAFSTV-LKDLKYADTHEWVKVEGDSATVGITDHAQHHLGDVVYVELPEVG 74
S+L+IS R FS+V LKDLKYAD+HEWVK++G+ AT GITDHAQ HLGDVVYVELP+VG
Sbjct: 13 SHLRISVAQRGFSSVVLKDLKYADSHEWVKIDGNKATFGITDHAQDHLGDVVYVELPDVG 72
Query: 75 SSVSQGKNFGAVESVKATSDIYSPVSGEVVAVNDGLGDEPGLVNTSPYESGWIIKVKVSD 134
SVSQGK+FGAVESVKATSDI SPVSG+VV VN+ L + PGLVN+SPYE GWIIKV++SD
Sbjct: 73 HSVSQGKSFGAVESVKATSDINSPVSGKVVEVNEELTESPGLVNSSPYEQGWIIKVELSD 132
Query: 135 SGELNSLMDDAKYSKFCEEEDSKH 158
+GE LMD KYSKFCEEED+KH
Sbjct: 133 AGEAEKLMDSDKYSKFCEEEDAKH 156
>AT1G32470.1 | chr1:11739479-11740246 REVERSE LENGTH=167
Length = 166
Score = 189 bits (480), Expect = 6e-49, Method: Compositional matrix adjust.
Identities = 89/134 (66%), Positives = 109/134 (81%)
Query: 25 RAFSTVLKDLKYADTHEWVKVEGDSATVGITDHAQHHLGDVVYVELPEVGSSVSQGKNFG 84
R FS+VL+ LKYA++HEWVK EG AT+GITDHAQ HLG+VV+VELPE SSVS+ K+FG
Sbjct: 33 RCFSSVLEGLKYANSHEWVKHEGSVATIGITDHAQDHLGEVVFVELPEANSSVSKEKSFG 92
Query: 85 AVESVKATSDIYSPVSGEVVAVNDGLGDEPGLVNTSPYESGWIIKVKVSDSGELNSLMDD 144
AVESVKATS+I SP+SGEV+ VN L + PGL+N+SPYE GW+IKVK S EL +LM
Sbjct: 93 AVESVKATSEILSPISGEVIEVNTKLTESPGLINSSPYEDGWMIKVKPSSPAELEALMGP 152
Query: 145 AKYSKFCEEEDSKH 158
+Y+KFCEEED+ H
Sbjct: 153 KEYTKFCEEEDAAH 166
>AT2G35370.1 | chr2:14891239-14892050 FORWARD LENGTH=166
Length = 165
Score = 189 bits (479), Expect = 8e-49, Method: Compositional matrix adjust.
Identities = 89/137 (64%), Positives = 110/137 (80%)
Query: 22 TFPRAFSTVLKDLKYADTHEWVKVEGDSATVGITDHAQHHLGDVVYVELPEVGSSVSQGK 81
+F R FSTVL+ LKYA++HEWVK EG AT+GIT HAQ HLG+VV+VELPE +SVS+ K
Sbjct: 29 SFSRCFSTVLEGLKYANSHEWVKHEGSVATIGITAHAQDHLGEVVFVELPEDNTSVSKEK 88
Query: 82 NFGAVESVKATSDIYSPVSGEVVAVNDGLGDEPGLVNTSPYESGWIIKVKVSDSGELNSL 141
+FGAVESVKATS+I SP+SGE++ VN L + PGL+N+SPYE GW+IKVK S EL SL
Sbjct: 89 SFGAVESVKATSEILSPISGEIIEVNKKLTESPGLINSSPYEDGWMIKVKPSSPAELESL 148
Query: 142 MDDAKYSKFCEEEDSKH 158
M +Y+KFCEEED+ H
Sbjct: 149 MGPKEYTKFCEEEDAAH 165
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.309 0.129 0.370
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 3,277,972
Number of extensions: 130002
Number of successful extensions: 273
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 273
Number of HSP's successfully gapped: 3
Length of query: 158
Length of database: 11,106,569
Length adjustment: 90
Effective length of query: 68
Effective length of database: 8,639,129
Effective search space: 587460772
Effective search space used: 587460772
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 107 (45.8 bits)