Os10g0516100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Glycine cleavage system H protein, mitochondrial precursor.
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Os10g0516100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Glycine cleavage system H protein, mitochondrial precursor.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 87.37 | 0.439 | 15.8 | -1.64 | 1.93 | 2.41 | 1.42 | 0.393 | -0.574 | 3.33 | 1.32 | 748 | -- | -- |
| 85.82 | 0.431 | 15.8 | -1.67 | 1.78 | 2.52 | 1.24 | -- | -0.586 | 3.6 | 1.3 | 803 | -- | -- |
| 90.29 | 0.443 | 15.8 | -1.7 | 1.53 | 1.99 | -- | -0.428 | -0.6 | 2.88 | 1.602 | 792 | -- | -- |
| 90.41 | 0.443 | 15.8 | -1.69 | 1.73 | 2.42 | -- | -- | -0.583 | 3.54 | 1.3 | 803 | -- | -- |
| 107.26 | 0.482 | 15.8 | -1.71 | -- | 2.01 | -- | 0.665 | -0.61 | -- | 1.32 | 1197 | -- | -- |
| 99.78 | 0.468 | 15.8 | -1.51 | 1.27 | -- | 0.626 | -- | -0.496 | 23 | -- | -- | -- | -- |
| 101.41 | 0.472 | 15.8 | -1.54 | 1.27 | -- | -- | -- | -0.497 | 22.9 | -- | -- | -- | -- |
| 108.12 | 0.484 | 15.8 | -1.72 | -- | 2.03 | -- | -- | -0.655 | -- | 1.57 | 1188 | -- | -- |
| 162.12 | 0.593 | 15.7 | -- | 1.39 | 1.67 | -- | -- | -0.31 | 2.45 | 1.58 | 784 | -- | -- |
| 201.03 | 0.663 | 15.8 | -1.51 | -- | -- | -- | -- | -0.489 | -- | -- | -- | -- | -- |
| 163.86 | 0.599 | 15.8 | -- | 1.25 | -- | -- | -- | -0.326 | 22.8 | -- | -- | -- | -- |
| 183.75 | 0.633 | 15.7 | -- | -- | -0.831 | -- | -- | -0.292 | -- | 1.57 | 1188 | -- | -- |
| 261.35 | 0.755 | 15.7 | -- | -- | -- | -- | -- | -0.321 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 84.85 | humidity | 50.0 | 720 | > th | dose dependent | rect. | 19 | 12 |
| 2 | 84.91 | humidity | 50.0 | 720 | > th | dose dependent | rect. | 19 | 3 |
| 5 | 85.76 | radiation | 1.0 | 720 | > th | dose independent | rect. | 7 | 23 |
| 9 | 86.40 | radiation | 1.0 | 720 | > th | dose independent | rect. | 7 | 11 |
| 10 | 86.40 | radiation | 1.0 | 720 | < th | dose independent | rect. | 19 | 23 |
| 11 | 86.44 | radiation | 1.0 | 720 | > th | dose independent | rect. | 15 | 21 |
| 25 | 86.63 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 19 | 1 |
| 26 | 86.68 | precipitation | 0.1 | 720 | < th | dose independent | rect. | 13 | 15 |
| 27 | 86.68 | precipitation | 0.1 | 720 | < th | dose dependent | rect. | 13 | 15 |
| 28 | 86.69 | wind | 3.0 | 43200 | < th | dose dependent | rect. | 2 | 3 |
| 29 | 86.72 | radiation | 1.0 | 720 | > th | dose independent | rect. | 13 | 23 |
| 30 | 86.74 | precipitation | 0.1 | 720 | < th | dose independent | rect. | 16 | 18 |
| 31 | 86.74 | precipitation | 0.1 | 720 | < th | dose dependent | rect. | 16 | 18 |
| 33 | 86.87 | precipitation | 0.1 | 720 | < th | dose independent | rect. | 7 | 20 |
| 34 | 86.87 | precipitation | 0.1 | 720 | < th | dose dependent | rect. | 7 | 20 |
| 47 | 87.27 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 19 | 1 |
| 48 | 87.27 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 19 | 1 |
| 49 | 87.28 | wind | 1.0 | 43200 | < th | dose independent | rect. | 1 | 3 |
| 50 | 87.33 | radiation | 1.0 | 720 | > th | dose independent | rect. | 15 | 23 |
| 51 | 87.37 | radiation | 1.0 | 720 | < th | dose independent | rect. | 1 | 23 |
| 53 | 87.38 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 16 | 1 |
| 55 | 87.47 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 19 | 1 |
| 59 | 87.50 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 16 | 1 |
| 61 | 87.50 | wind | 1.0 | 43200 | > th | dose independent | rect. | 1 | 3 |
| 62 | 87.51 | humidity | 80.0 | 14400 | > th | dose independent | rect. | 13 | 12 |
| 63 | 87.52 | radiation | 10.0 | 14400 | < th | dose independent | rect. | 13 | 2 |
| 70 | 87.55 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 13 | 1 |
| 71 | 87.55 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 16 | 1 |
| 72 | 87.55 | radiation | 1.0 | 720 | > th | dose independent | rect. | 16 | 18 |
| 73 | 87.55 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 16 | 1 |
| 76 | 87.58 | radiation | 1.0 | 720 | < th | dose independent | rect. | 15 | 17 |
| 81 | 87.61 | precipitation | 0.1 | 720 | < th | dose independent | rect. | 21 | 7 |
| 84 | 87.61 | precipitation | 0.1 | 720 | < th | dose dependent | rect. | 21 | 7 |
| 90 | 87.67 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 13 | 1 |
| 91 | 87.67 | radiation | 1.0 | 720 | < th | dose independent | rect. | 3 | 21 |
| 92 | 87.67 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 13 | 1 |
| 94 | 87.69 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 16 | 4 |
| 96 | 87.70 | radiation | 1.0 | 720 | < th | dose independent | sin | 13 | NA |
| 99 | 87.71 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 13 | 7 |
| 109 | 87.79 | wind | 1.0 | 43200 | < th | dose independent | rect. | 1 | 5 |
| 111 | 87.80 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 14 | 4 |
| 112 | 87.80 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 16 | 4 |
| 117 | 87.83 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 14 | 4 |
| 118 | 87.83 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 14 | 4 |
| 122 | 87.84 | radiation | 1.0 | 720 | > th | dose independent | rect. | 15 | 15 |
| 141 | 87.92 | humidity | 80.0 | 14400 | > th | dose independent | rect. | 15 | 1 |
| 143 | 87.92 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 13 | 1 |
| 146 | 87.93 | radiation | 1.0 | 720 | > th | dose independent | rect. | 15 | 3 |
| 152 | 87.95 | radiation | 1.0 | 720 | < th | dose independent | rect. | 3 | 23 |
| 161 | 87.97 | humidity | 90.0 | 720 | < th | dose independent | rect. | 15 | 10 |
| 164 | 87.98 | humidity | 70.0 | 720 | > th | dose independent | rect. | 19 | 12 |
| 166 | 87.98 | radiation | 1.0 | 720 | < th | dose dependent | sin | 13 | NA |
| 173 | 87.99 | radiation | 20.0 | 14400 | < th | dose dependent | rect. | 13 | 1 |
| 194 | 88.04 | humidity | 80.0 | 14400 | > th | dose independent | sin | 16 | NA |
| 204 | 88.05 | radiation | 1.0 | 720 | < th | dose dependent | rect. | 19 | 23 |
| 211 | 88.10 | humidity | 80.0 | 14400 | > th | dose independent | rect. | 20 | 2 |
| 230 | 88.12 | precipitation | 0.1 | 720 | < th | dose independent | rect. | 21 | 22 |
| 232 | 88.12 | precipitation | 0.1 | 720 | < th | dose dependent | rect. | 21 | 22 |
| 250 | 88.16 | precipitation | 0.1 | 43200 | > th | dose dependent | sin | 22 | NA |
| 254 | 88.17 | wind | 1.0 | 43200 | > th | dose independent | rect. | 3 | 1 |
| 256 | 88.17 | precipitation | 0.1 | 720 | < th | dose independent | rect. | 8 | 23 |
| 259 | 88.17 | precipitation | 0.1 | 720 | < th | dose dependent | rect. | 8 | 23 |
| 269 | 88.19 | humidity | 80.0 | 14400 | < th | dose independent | rect. | 14 | 10 |
| 290 | 88.23 | humidity | 70.0 | 720 | > th | dose independent | rect. | 19 | 10 |
| 305 | 88.26 | wind | 1.0 | 14400 | < th | dose independent | rect. | 4 | 1 |
| 325 | 88.27 | radiation | 1.0 | 720 | < th | dose dependent | rect. | 15 | 17 |
| 338 | 88.29 | radiation | 1.0 | 720 | < th | dose dependent | rect. | 1 | 23 |
| 341 | 88.30 | precipitation | 0.1 | 720 | < th | dose independent | rect. | 7 | 18 |
| 344 | 88.30 | precipitation | 0.1 | 720 | < th | dose dependent | rect. | 7 | 18 |
| 371 | 88.35 | radiation | 10.0 | 14400 | > th | dose independent | rect. | 13 | 1 |
| 394 | 88.39 | precipitation | 0.1 | 720 | < th | dose independent | rect. | 16 | 9 |
| 397 | 88.39 | precipitation | 0.1 | 720 | < th | dose dependent | rect. | 16 | 9 |
| 409 | 88.42 | precipitation | 0.1 | 720 | < th | dose independent | sin | 9 | NA |
| 415 | 88.42 | precipitation | 0.1 | 720 | < th | dose dependent | sin | 9 | NA |
| 431 | 88.45 | radiation | 1.0 | 720 | < th | dose independent | rect. | 16 | 8 |
| 440 | 88.46 | radiation | 1.0 | 720 | > th | dose independent | sin | 14 | NA |
| 454 | 88.48 | radiation | 1.0 | 720 | < th | dose dependent | rect. | 3 | 21 |
| 477 | 88.54 | humidity | 80.0 | 14400 | < th | dose independent | rect. | 19 | 3 |
| 485 | 88.55 | humidity | 80.0 | 14400 | < th | dose independent | rect. | 18 | 5 |
| 491 | 88.55 | humidity | 90.0 | 14400 | < th | dose dependent | rect. | 20 | 1 |
| 496 | 88.57 | wind | 1.0 | 720 | > th | dose independent | rect. | 4 | 1 |
| 524 | 88.60 | humidity | 70.0 | 720 | > th | dose independent | rect. | 19 | 3 |
| 550 | 88.63 | precipitation | 0.1 | 720 | < th | dose independent | rect. | 7 | 12 |
| 556 | 88.63 | precipitation | 0.1 | 720 | < th | dose dependent | rect. | 7 | 12 |
| 569 | 88.65 | humidity | 80.0 | 14400 | < th | dose independent | sin | 16 | NA |
| 574 | 88.65 | radiation | 40.0 | 720 | < th | dose dependent | rect. | 19 | 12 |
| 593 | 88.69 | temperature | 25.0 | 90 | > th | dose independent | rect. | 17 | 10 |
| 595 | 88.69 | radiation | 1.0 | 720 | < th | dose independent | rect. | 4 | 18 |
| 631 | 88.71 | radiation | 1.0 | 720 | < th | dose independent | rect. | 4 | 14 |
| 656 | 88.73 | radiation | 10.0 | 43200 | > th | dose independent | rect. | 5 | 1 |
| 754 | 88.83 | wind | 1.0 | 90 | > th | dose independent | rect. | 4 | 3 |
| 758 | 88.83 | radiation | 1.0 | 720 | < th | dose dependent | rect. | 16 | 8 |
| 770 | 88.86 | humidity | 80.0 | 43200 | > th | dose independent | rect. | 13 | 1 |
| 793 | 88.90 | radiation | 1.0 | 720 | < th | dose dependent | rect. | 3 | 23 |
| 799 | 88.92 | precipitation | 0.1 | 43200 | > th | dose independent | sin | 21 | NA |
| 809 | 88.94 | precipitation | 0.1 | 43200 | < th | dose independent | sin | 21 | NA |
| 822 | 88.94 | precipitation | 0.1 | 43200 | < th | dose dependent | sin | 21 | NA |
| 823 | 88.94 | humidity | 50.0 | 14400 | > th | dose dependent | rect. | 20 | 1 |
| 833 | 88.96 | wind | 3.0 | 43200 | < th | dose independent | rect. | 7 | 2 |
| 842 | 88.97 | temperature | 25.0 | 14400 | > th | dose independent | rect. | 6 | 1 |
| 857 | 88.98 | radiation | 1.0 | 720 | > th | dose independent | no | NA | NA |
| 858 | 88.98 | wind | 3.0 | 43200 | > th | dose independent | rect. | 7 | 2 |
| 908 | 88.99 | radiation | 40.0 | 14400 | > th | dose independent | rect. | 13 | 1 |
| 924 | 89.01 | radiation | 40.0 | 14400 | < th | dose independent | rect. | 13 | 1 |
| 928 | 89.01 | temperature | 25.0 | 270 | > th | dose independent | rect. | 15 | 10 |
| 940 | 89.03 | humidity | 80.0 | 43200 | < th | dose independent | rect. | 13 | 1 |
| 941 | 89.03 | wind | 1.0 | 720 | > th | dose independent | rect. | 15 | 4 |
| 950 | 89.05 | temperature | 25.0 | 14400 | < th | dose independent | rect. | 6 | 1 |
| 954 | 89.05 | radiation | 1.0 | 14400 | > th | dose dependent | rect. | 13 | 1 |
| 970 | 89.07 | radiation | 10.0 | 14400 | < th | dose independent | sin | 18 | NA |
| 974 | 89.07 | radiation | 1.0 | 720 | < th | dose independent | rect. | 19 | 11 |
| 977 | 89.07 | temperature | 25.0 | 14400 | > th | dose dependent | rect. | 7 | 1 |
| 991 | 89.09 | precipitation | 0.1 | 720 | < th | dose independent | rect. | 15 | 13 |
| 993 | 89.09 | precipitation | 0.1 | 720 | < th | dose dependent | rect. | 15 | 13 |
| 994 | 89.10 | wind | 3.0 | 14400 | > th | dose independent | rect. | 14 | 1 |