BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os10g0512700 Os10g0512700|AK067223
(370 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os10g0512700 Similar to SH3 domain-containing protein 3 671 0.0
Os03g0266700 Src homology-3 domain containing protein 333 1e-91
Os07g0508300 Similar to SH3 domain-containing protein 3 300 1e-81
Os04g0539800 Src homology-3 domain containing protein 118 8e-27
>Os10g0512700 Similar to SH3 domain-containing protein 3
Length = 370
Score = 671 bits (1731), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 336/370 (90%), Positives = 336/370 (90%)
Query: 1 MEAIRKQASKLREQVARQQQAVMKQXXXXXXXXXXXXXXXXXQQHSKLEKLYISTRAAKH 60
MEAIRKQASKLREQVARQQQAVMKQ QQHSKLEKLYISTRAAKH
Sbjct: 1 MEAIRKQASKLREQVARQQQAVMKQFGGGYGADGAFADEAEAQQHSKLEKLYISTRAAKH 60
Query: 61 FQRDIVRGVEGYIVTGSKQVEIGNKLCEDGKKYGAENTCTSGSTLSKAALCFAKARSLME 120
FQRDIVRGVEGYIVTGSKQVEIGNKLCEDGKKYGAENTCTSGSTLSKAALCFAKARSLME
Sbjct: 61 FQRDIVRGVEGYIVTGSKQVEIGNKLCEDGKKYGAENTCTSGSTLSKAALCFAKARSLME 120
Query: 121 KERGNLLKALGTQVAEPLRAMVMGAPLEDARHLAQRYDRMRQEAEAQAIEVSKRQMKLRE 180
KERGNLLKALGTQVAEPLRAMVMGAPLEDARHLAQRYDRMRQEAEAQAIEVSKRQMKLRE
Sbjct: 121 KERGNLLKALGTQVAEPLRAMVMGAPLEDARHLAQRYDRMRQEAEAQAIEVSKRQMKLRE 180
Query: 181 TSGNGDMISRLEAAESKLQELKSNMGVLGKEAVASMTAVEAQQQRLTLQRLIAMVESERS 240
TSGNGDMISRLEAAESKLQELKSNMGVLGKEAVASMTAVEAQQQRLTLQRLIAMVESERS
Sbjct: 181 TSGNGDMISRLEAAESKLQELKSNMGVLGKEAVASMTAVEAQQQRLTLQRLIAMVESERS 240
Query: 241 YHQRVLQILDQLEREMVSERQRIEGAXXXXXXXXXXXXXXXXXINGVFMRNPTVAELVET 300
YHQRVLQILDQLEREMVSERQRIEGA INGVFMRNPTVAELVET
Sbjct: 241 YHQRVLQILDQLEREMVSERQRIEGAPPPAVESSMPPPPSYEEINGVFMRNPTVAELVET 300
Query: 301 VEFFLAEAIQSYRAESETELNLAAGDYIVVRKVSNNGWAEGECRGKAGWFPYDYIEKRDR 360
VEFFLAEAIQSYRAESETELNLAAGDYIVVRKVSNNGWAEGECRGKAGWFPYDYIEKRDR
Sbjct: 301 VEFFLAEAIQSYRAESETELNLAAGDYIVVRKVSNNGWAEGECRGKAGWFPYDYIEKRDR 360
Query: 361 VLASKVAQVF 370
VLASKVAQVF
Sbjct: 361 VLASKVAQVF 370
>Os03g0266700 Src homology-3 domain containing protein
Length = 394
Score = 333 bits (854), Expect = 1e-91, Method: Compositional matrix adjust.
Identities = 179/387 (46%), Positives = 239/387 (61%), Gaps = 22/387 (5%)
Query: 1 MEAIRKQASKLREQVARQQQAVMKQXXXXXXXXXXXXXXXXXQQHSKLEKLYISTRAAKH 60
ME +RKQASKLRE VA+QQQAV KQ + H L++LY STRAAKH
Sbjct: 1 METLRKQASKLREHVAKQQQAVRKQFSARYNQDPSLVDEAELECHQNLQRLYNSTRAAKH 60
Query: 61 FQRDIVRGVEGYIVTGSKQVEIGNKLCEDGKKYGAENTCTSGSTLSKAALCFAKARSLME 120
FQR IVRGVEG+I +KQ+EI KL ED +YG +N G L++A++ F + S ME
Sbjct: 61 FQRSIVRGVEGFIAVSTKQMEIVKKLAEDCCRYGNDNQ-NFGFILARASVEFGNSHSQME 119
Query: 121 KERGNLLKALGTQVAEPLRAMVMGAPLEDARHLAQRYDRMRQEAEAQAIEVSKRQMKLRE 180
KER NLLK LG QV EPLR M+M APLEDAR L RY R+RQ+ E+Q +V ++Q+K +E
Sbjct: 120 KERENLLKFLGEQVFEPLREMIMSAPLEDARLLTYRYQRIRQDMESQIADVMRKQLKSKE 179
Query: 181 TSGNGDMISRLEAAESKLQELKSNMGVLGKEAVASMTAVEAQQQRLTLQRLIAMVESERS 240
+SGN D +L+ AESKL EL++ + LG+EA A+M AVE QQQ++T RL+AMV++ER+
Sbjct: 180 SSGNADNSVKLQHAESKLSELRTTLSALGREATAAMEAVEVQQQQVTFDRLLAMVDAERA 239
Query: 241 YHQRVLQILDQLEREMVSERQRIEG------AXXXXXXXXXXXXXXXXXINGVFMRN--P 292
YHQ IL++L EMV + E + +F P
Sbjct: 240 YHQNAADILNKLHDEMVQAKHHDEPENHYDETSSDPKTAATHEHSRSTSEDHIFTNTSEP 299
Query: 293 TVAEL-----VETVE--------FFLAEAIQSYRAESETELNLAAGDYIVVRKVSNNGWA 339
T E ET E ++ E I + A+++ EL+++ GDY+VVR+V+ NGW+
Sbjct: 300 TRTETSEPTRTETSEPTRNGQEVHYVGEVIHPFDAQADGELSISVGDYVVVRQVAPNGWS 359
Query: 340 EGECRGKAGWFPYDYIEKRDRVLASKV 366
EGEC+GKAGWFP Y+E+RD+ ASKV
Sbjct: 360 EGECKGKAGWFPSAYVEQRDKAPASKV 386
>Os07g0508300 Similar to SH3 domain-containing protein 3
Length = 348
Score = 300 bits (768), Expect = 1e-81, Method: Compositional matrix adjust.
Identities = 165/370 (44%), Positives = 233/370 (62%), Gaps = 30/370 (8%)
Query: 1 MEAIRKQASKLREQVARQQQAVMKQXXXX--XXXXXXXXXXXXXQQHSKLEKLYISTRAA 58
M+ +RKQASK +EQVA+QQQAV+KQ Q+H +LEKLY STR+
Sbjct: 1 MDVLRKQASKFKEQVAKQQQAVIKQFSTTGYEHSDAVVIDEVELQRHQQLEKLYTSTRSG 60
Query: 59 KHFQRDIVRGVEGYIVTGSKQVEIGNKLCEDGKKYGAENTCTSGSTLSKAALCFAKARSL 118
+ FQ+DIVR EG + G + VE+G K ED +YG E++ S L+KAA + A
Sbjct: 61 RDFQKDIVRAAEGLVSIGIRHVEVGTKFSEDCYRYGGESSA-SDEALAKAASLYGGALRN 119
Query: 119 MEKERGNLLKALGTQVAEPLRAMVMGAPLEDARHLAQRYDRMRQEAEAQAIEVSKRQMKL 178
+EKE + L +Q +PLRAM GAPLEDAR LAQRY RMR EAE + E+++R+ ++
Sbjct: 120 VEKEYEEFNRILSSQTIDPLRAMAAGAPLEDARGLAQRYSRMRHEAEILSAEIARRKQRV 179
Query: 179 RETSGNGDMISRLEAAESKLQELKSNMGVLGKEAVASMTAVEAQQQRLTLQRLIAMVESE 238
RE + ++L+ +ESK+ E K++M VLGKEA A++ AVE+QQQR+TLQRL+ MVE+E
Sbjct: 180 REAP-LAEHTTKLQQSESKMIEHKASMAVLGKEAAAALAAVESQQQRITLQRLVGMVEAE 238
Query: 239 RSYHQRVLQILDQLEREMVSERQRIEGAXXXXXXXXXXXXXXXXXINGVFMRNPTV--AE 296
+ +H R+ ILD +E EM SE+Q+ E A PT+ +
Sbjct: 239 KLFHLRLAAILDDVEAEMSSEKQKRESA------------------------PPTIHSHK 274
Query: 297 LVETVEFFLAEAIQSYRAESETELNLAAGDYIVVRKVSNNGWAEGECRGKAGWFPYDYIE 356
E ++FLAEA+ ++ +E EL+L GDY+VVR+++ NGWAEGEC+G AGWFP Y+E
Sbjct: 275 RAEKAQYFLAEAVHNFNGTTEKELSLIVGDYVVVRQIAPNGWAEGECKGVAGWFPAAYVE 334
Query: 357 KRDRVLASKV 366
+R+ + +KV
Sbjct: 335 RRENIPPNKV 344
>Os04g0539800 Src homology-3 domain containing protein
Length = 115
Score = 118 bits (295), Expect = 8e-27, Method: Composition-based stats.
Identities = 61/116 (52%), Positives = 80/116 (68%), Gaps = 2/116 (1%)
Query: 256 MVSERQRIEGAXXXXXXXXXXXXX-XXXXINGVFMRNPTVAELVETVEFFLAEAIQSYRA 314
MVSERQ+IE +NG+F + V +V+FFL EA+ S++A
Sbjct: 1 MVSERQKIEAPPTPSAENYMAQPPPSYDEVNGMFASSSVDDS-VTSVDFFLGEALDSFKA 59
Query: 315 ESETELNLAAGDYIVVRKVSNNGWAEGECRGKAGWFPYDYIEKRDRVLASKVAQVF 370
ESE+ELNL+AGD ++VRK+S NGWAEGEC+GKAGWFP+ YIE+R+RVLASKV +F
Sbjct: 60 ESESELNLSAGDIVIVRKISTNGWAEGECKGKAGWFPHGYIERRERVLASKVPHIF 115
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.315 0.128 0.344
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 8,729,650
Number of extensions: 292266
Number of successful extensions: 1092
Number of sequences better than 1.0e-10: 4
Number of HSP's gapped: 1084
Number of HSP's successfully gapped: 5
Length of query: 370
Length of database: 17,035,801
Length adjustment: 102
Effective length of query: 268
Effective length of database: 11,709,973
Effective search space: 3138272764
Effective search space used: 3138272764
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 157 (65.1 bits)