Os10g0512700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to SH3 domain-containing protein 3.
FiT-DB / Search/ Help/ Sample detail
|
Os10g0512700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
|
Description : Similar to SH3 domain-containing protein 3.
|
|
log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
|
_____ |
|
__
Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 30.95 | 0.261 | 8.84 | -0.787 | 0.756 | 1.19 | -0.379 | -1.04 | -0.245 | 6.35 | 9.054 | 476 | -- | -- |
| 31.58 | 0.262 | 8.82 | -0.618 | 0.758 | 1.17 | -0.145 | -- | -0.197 | 6.37 | 8.601 | 481 | -- | -- |
| 31.24 | 0.26 | 8.83 | -0.748 | 0.761 | 1.2 | -- | -0.744 | -0.232 | 6.38 | 9.273 | 477 | -- | -- |
| 31.63 | 0.262 | 8.82 | -0.623 | 0.761 | 1.18 | -- | -- | -0.199 | 6.4 | 11.26 | 483 | -- | -- |
| 40.87 | 0.298 | 8.85 | -0.798 | -- | 0.983 | -- | -0.675 | -0.232 | -- | 5.847 | 1331 | -- | -- |
| 47.13 | 0.322 | 8.79 | -0.352 | 0.442 | -- | -0.385 | -- | -0.0255 | 6.21 | -- | -- | -- | -- |
| 47.49 | 0.323 | 8.79 | -0.356 | 0.44 | -- | -- | -- | -0.0239 | 6.32 | -- | -- | -- | -- |
| 41.25 | 0.299 | 8.83 | -0.65 | -- | 0.975 | -- | -- | -0.193 | -- | -5.689 | 1338 | -- | -- |
| 40.75 | 0.297 | 8.8 | -- | 0.678 | 0.899 | -- | -- | -0.096 | 6.31 | 14.2 | 444 | -- | -- |
| 57.55 | 0.354 | 8.79 | -0.344 | -- | -- | -- | -- | -0.0144 | -- | -- | -- | -- | -- |
| 50.82 | 0.333 | 8.78 | -- | 0.435 | -- | -- | -- | 0.0157 | 6.36 | -- | -- | -- | -- |
| 50.92 | 0.332 | 8.81 | -- | -- | 0.705 | -- | -- | -0.0802 | -- | -62.01 | 1315 | -- | -- |
| 60.67 | 0.364 | 8.79 | -- | -- | -- | -- | -- | 0.0237 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
|
Histogram 
|
Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 27.12 | temperature | 15 | 270 | > th | dose dependent | rect. | 11 | 21 |
| 17 | 28.80 | temperature | 30 | 90 | < th | dose dependent | rect. | 9 | 18 |
| 19 | 28.88 | temperature | 30 | 90 | < th | dose dependent | rect. | 11 | 16 |
| 23 | 29.08 | temperature | 30 | 270 | < th | dose dependent | rect. | 7 | 20 |
| 29 | 29.24 | temperature | 30 | 10 | < th | dose dependent | rect. | 9 | 19 |
| 61 | 29.72 | temperature | 10 | 10 | > th | dose dependent | sin | 14 | NA |
| 66 | 29.80 | temperature | 30 | 10 | < th | dose dependent | sin | 14 | NA |
| 99 | 30.07 | temperature | 10 | 720 | > th | dose dependent | rect. | 10 | 14 |
| 134 | 30.29 | temperature | 10 | 720 | > th | dose dependent | rect. | 4 | 20 |
| 187 | 30.59 | temperature | 10 | 270 | > th | dose dependent | rect. | 24 | 23 |
| 237 | 30.78 | temperature | 15 | 270 | > th | dose dependent | rect. | 12 | 11 |
| 316 | 30.99 | temperature | 15 | 10 | > th | dose dependent | rect. | 15 | 17 |
| 332 | 31.04 | temperature | 15 | 10 | > th | dose dependent | rect. | 14 | 19 |
| 354 | 31.11 | temperature | 30 | 270 | < th | dose dependent | rect. | 15 | 11 |
| 396 | 31.21 | temperature | 10 | 720 | > th | dose dependent | rect. | 18 | 23 |
| 530 | 31.51 | temperature | 10 | 720 | > th | dose dependent | no | NA | NA |
| 543 | 31.54 | radiation | 40 | 4320 | < th | dose dependent | rect. | 20 | 10 |
| 601 | 31.66 | temperature | 25 | 10 | < th | dose dependent | rect. | 23 | 23 |
| 608 | 31.68 | temperature | 20 | 270 | > th | dose independent | rect. | 13 | 18 |
| 614 | 31.68 | temperature | 25 | 10 | < th | dose dependent | rect. | 19 | 23 |
| 615 | 31.69 | radiation | 1 | 4320 | > th | dose dependent | rect. | 4 | 2 |
| 622 | 31.69 | radiation | 40 | 4320 | < th | dose dependent | rect. | 22 | 8 |
| 636 | 31.71 | temperature | 25 | 10 | < th | dose dependent | no | NA | NA |
| 637 | 31.71 | radiation | 40 | 4320 | < th | dose dependent | rect. | 24 | 6 |
| 645 | 31.71 | temperature | 25 | 10 | < th | dose dependent | rect. | 21 | 23 |
| 650 | 31.72 | temperature | 25 | 10 | < th | dose dependent | rect. | 11 | 23 |
| 651 | 31.72 | temperature | 25 | 10 | < th | dose dependent | rect. | 15 | 23 |
| 665 | 31.74 | temperature | 25 | 10 | < th | dose dependent | rect. | 13 | 23 |
| 666 | 31.74 | temperature | 25 | 10 | < th | dose dependent | rect. | 17 | 23 |
| 681 | 31.77 | temperature | 10 | 1440 | > th | dose dependent | rect. | 5 | 9 |
| 695 | 31.80 | radiation | 40 | 4320 | < th | dose dependent | rect. | 2 | 4 |
| 743 | 31.88 | temperature | 10 | 1440 | > th | dose dependent | sin | 4 | NA |
| 749 | 31.88 | temperature | 25 | 10 | < th | dose dependent | rect. | 3 | 23 |
| 787 | 31.92 | temperature | 10 | 1440 | > th | dose dependent | rect. | 22 | 17 |
| 893 | 32.01 | temperature | 10 | 1440 | > th | dose dependent | rect. | 6 | 1 |
| 967 | 32.07 | temperature | 30 | 720 | < th | dose dependent | rect. | 11 | 23 |
| 995 | 32.09 | temperature | 20 | 10 | > th | dose dependent | rect. | 12 | 21 |
| 1000 | 32.09 | temperature | 30 | 720 | < th | dose dependent | rect. | 1 | 23 |