BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os10g0512700 Os10g0512700|AK067223
(370 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT4G34660.1 | chr4:16545595-16548294 REVERSE LENGTH=369 486 e-137
AT4G18060.1 | chr4:10027668-10029662 REVERSE LENGTH=352 340 9e-94
AT1G31440.1 | chr1:11256150-11258479 REVERSE LENGTH=440 248 3e-66
AT4G39020.1 | chr4:18182315-18184340 FORWARD LENGTH=170 96 3e-20
>AT4G34660.1 | chr4:16545595-16548294 REVERSE LENGTH=369
Length = 368
Score = 486 bits (1250), Expect = e-137, Method: Compositional matrix adjust.
Identities = 239/373 (64%), Positives = 292/373 (78%), Gaps = 8/373 (2%)
Query: 1 MEAIRKQASKLREQVARQQQAVMKQXXXXXXXXXXXXXXXXXQQHSKLEKLYISTRAAKH 60
M+AIRKQAS+LREQVARQQQAV KQ QH KLEKLYISTRAAKH
Sbjct: 1 MDAIRKQASRLREQVARQQQAVFKQFGGGGYGSGLADEAEL-NQHQKLEKLYISTRAAKH 59
Query: 61 FQRDIVRGVEGYIVTGSKQVEIGNKLCEDGKKYGAENTCTSGSTLSKAALCFAKARSLME 120
+QRDIVRGVEGYIVTGSKQVEIG KL ED +KYG+ENTCT+G+ L++AAL + +AR+ ME
Sbjct: 60 YQRDIVRGVEGYIVTGSKQVEIGTKLSEDSRKYGSENTCTNGNVLTRAALNYGRARAQME 119
Query: 121 KERGNLLKALGTQVAEPLRAMVMGAPLEDARHLAQRYDRMRQEAEAQAIEVSKRQMKLRE 180
KERGN+LKALGTQVAEPLRAMV+GAPLEDARHLAQRYDRMRQEAEAQA EV++RQ K RE
Sbjct: 120 KERGNMLKALGTQVAEPLRAMVLGAPLEDARHLAQRYDRMRQEAEAQATEVARRQAKARE 179
Query: 181 TSGNGDMISRLEAAESKLQELKSNMGVLGKEAVASMTAVEAQQQRLTLQRLIAMVESERS 240
+ GN D++ +LE+AE+KL +LKSNM +LGKEA +++ +VE QQQ+LTL+RL++MVESER+
Sbjct: 180 SQGNPDILMKLESAEAKLHDLKSNMTILGKEAASALASVEDQQQKLTLERLLSMVESERA 239
Query: 241 YHQRVLQILDQLEREMVSERQRIEGAXXXXXXXXXXXXXXXXXINGVF---MRNPTVAEL 297
YHQRVLQILDQLE EMVSERQRIE NGVF M + +
Sbjct: 240 YHQRVLQILDQLEGEMVSERQRIEAPSTPSSADSMPPPPSYEEANGVFASQMHDTS---- 295
Query: 298 VETVEFFLAEAIQSYRAESETELNLAAGDYIVVRKVSNNGWAEGECRGKAGWFPYDYIEK 357
+++ +FL E + Y ++ EL+L+ G+Y+VVRKV+ +GWAEGEC+GKAGWFPY YIE+
Sbjct: 296 TDSMGYFLGEVLFPYHGVTDVELSLSTGEYVVVRKVTGSGWAEGECKGKAGWFPYGYIER 355
Query: 358 RDRVLASKVAQVF 370
R+RVLASKV++VF
Sbjct: 356 RERVLASKVSEVF 368
>AT4G18060.1 | chr4:10027668-10029662 REVERSE LENGTH=352
Length = 351
Score = 340 bits (871), Expect = 9e-94, Method: Compositional matrix adjust.
Identities = 184/370 (49%), Positives = 237/370 (64%), Gaps = 26/370 (7%)
Query: 1 MEAIRKQASKLREQVARQQQAVMKQXXXX--XXXXXXXXXXXXXQQHSKLEKLYISTRAA 58
M+A R+QASKLR+QVA+QQ AV+KQ Q+H +L+KLY STR+A
Sbjct: 1 MDAFRRQASKLRDQVAKQQLAVIKQFSGTGYESSDVMVIDELEMQRHHQLDKLYRSTRSA 60
Query: 59 KHFQRDIVRGVEGYIVTGSKQVEIGNKLCEDGKKYGAENT-CTSGSTLSKAALCFAKARS 117
K FQRDIV+ E + G + +E G KL ED +YG EN+ + L+KAA + AR
Sbjct: 61 KEFQRDIVKAAEAFTTIGLRHIEAGTKLSEDCCRYGNENSQNIDENILAKAAAIYGDARK 120
Query: 118 LMEKERGNLLKALGTQVAEPLRAMVMGAPLEDARHLAQRYDRMRQEAEAQAIEVSKRQMK 177
++KE+ + K L +QV +PLRAMV G+PLEDARHLAQRY RMRQEAE A EVS+RQ +
Sbjct: 121 HVDKEQEDFNKLLASQVLDPLRAMVAGSPLEDARHLAQRYSRMRQEAETHATEVSRRQAR 180
Query: 178 LRETSGNGDMISRLEAAESKLQELKSNMGVLGKEAVASMTAVEAQQQRLTLQRLIAMVES 237
+RE + + +++L+ AE+K+QELK+NM VLGKEA A++ AVE+QQ RLT QRL+AMVE
Sbjct: 181 VRE-APIPENVAKLQLAEAKMQELKANMAVLGKEATAALAAVESQQHRLTFQRLVAMVEG 239
Query: 238 ERSYHQRVLQILDQLEREMVSERQRIEGAXXXXXXXXXXXXXXXXXINGVFMRNPTVAEL 297
E++YH R+ IL +E EMV+E+Q E A NG
Sbjct: 240 EKNYHLRIAAILSDIEAEMVTEKQHKESAPPAIPTE-----------NG----------- 277
Query: 298 VETVEFFLAEAIQSYRAESETELNLAAGDYIVVRKVSNNGWAEGECRGKAGWFPYDYIEK 357
E +FLAE I + A SE EL+L GDYIVVRKVS GWAEGEC+GKAGWFP YIEK
Sbjct: 278 SEKTSYFLAEVIHPFSAASEKELDLDKGDYIVVRKVSQTGWAEGECKGKAGWFPMAYIEK 337
Query: 358 RDRVLASKVA 367
R R+ + A
Sbjct: 338 RQRLPTTNFA 347
>AT1G31440.1 | chr1:11256150-11258479 REVERSE LENGTH=440
Length = 439
Score = 248 bits (634), Expect = 3e-66, Method: Compositional matrix adjust.
Identities = 137/263 (52%), Positives = 175/263 (66%), Gaps = 2/263 (0%)
Query: 1 MEAIRKQASKLREQVARQQQAVMKQXXXXXXXXXXXXXXXXXQQHSKLEKLYISTRAAKH 60
MEAIRKQA+KLREQVARQQQAV+K H KL+ LY ST+AAK
Sbjct: 1 MEAIRKQAAKLREQVARQQQAVLKHLGHVNADAVVVDEEEL-HCHQKLQDLYSSTKAAKR 59
Query: 61 FQRDIVRGVEGYIVTGSKQVEIGNKLCEDGKKYGAENTCTSGSTLSKAALCFAKARSLME 120
QR+IVRG+EG+I TG+K VEIG K ED KKYG EN + + LS+ A F + +E
Sbjct: 60 LQRNIVRGLEGFIATGTKVVEIGLKFAEDFKKYGDENP-DANTPLSRVAHHFGTSYKSVE 118
Query: 121 KERGNLLKALGTQVAEPLRAMVMGAPLEDARHLAQRYDRMRQEAEAQAIEVSKRQMKLRE 180
ER LL L QV EP+R M+ APLEDARHL YDR+RQE EAQA +V +R+ KL+E
Sbjct: 119 GERETLLGVLSEQVCEPIRTMIYSAPLEDARHLVNHYDRLRQEVEAQATDVLRRRSKLKE 178
Query: 181 TSGNGDMISRLEAAESKLQELKSNMGVLGKEAVASMTAVEAQQQRLTLQRLIAMVESERS 240
+ + + +L+ +ES+L ELKS+M LGKEA +M V+ QQQ +T QRL A+VE+ERS
Sbjct: 179 SDISEEAYIKLKNSESRLAELKSSMKTLGKEATKAMLEVDDQQQNVTSQRLRALVEAERS 238
Query: 241 YHQRVLQILDQLEREMVSERQRI 263
YH+ L ILD+L EM++E + I
Sbjct: 239 YHRNALDILDKLHSEMIAEEEAI 261
Score = 84.3 bits (207), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 32/72 (44%), Positives = 52/72 (72%)
Query: 297 LVETVEFFLAEAIQSYRAESETELNLAAGDYIVVRKVSNNGWAEGECRGKAGWFPYDYIE 356
L + +FLA+ + + A++ EL+LA DY++VR+V+ GW+EGE +GKAGWFP Y+E
Sbjct: 362 LSQNDSYFLAKVVHPFDAQAPGELSLAVDDYVIVRQVAGTGWSEGEYKGKAGWFPSAYVE 421
Query: 357 KRDRVLASKVAQ 368
K+++ ASK+ +
Sbjct: 422 KQEKAPASKIVE 433
>AT4G39020.1 | chr4:18182315-18184340 FORWARD LENGTH=170
Length = 169
Score = 95.9 bits (237), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 39/68 (57%), Positives = 55/68 (80%)
Query: 303 FFLAEAIQSYRAESETELNLAAGDYIVVRKVSNNGWAEGECRGKAGWFPYDYIEKRDRVL 362
+FL E + Y+A+S+ EL+L+ GDY+V+R+V ++ WAEGEC+G AGWF Y YIE+RDRV
Sbjct: 102 YFLGEVMFPYQADSDFELSLSVGDYVVIREVVSSVWAEGECKGNAGWFTYIYIERRDRVF 161
Query: 363 ASKVAQVF 370
A+KV +VF
Sbjct: 162 ATKVIEVF 169
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.315 0.128 0.344
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 5,716,160
Number of extensions: 192465
Number of successful extensions: 809
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 802
Number of HSP's successfully gapped: 5
Length of query: 370
Length of database: 11,106,569
Length adjustment: 100
Effective length of query: 270
Effective length of database: 8,364,969
Effective search space: 2258541630
Effective search space used: 2258541630
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 112 (47.8 bits)