Os07g0508300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to SH3 domain-containing protein 3.
FiT-DB / Search/ Help/ Sample detail
|
Os07g0508300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
|
Description : Similar to SH3 domain-containing protein 3.
|
|
log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
|
_____ |
|
__
Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 16.7 | 0.192 | 11 | 0.135 | 0.144 | 0.306 | -0.193 | 1.25 | 0.132 | 5.9 | 30.34 | 1003 | -- | -- |
| 16.86 | 0.191 | 11.1 | -0.0265 | 0.159 | 0.437 | -0.287 | -- | 0.126 | 5.85 | 30.34 | 1007 | -- | -- |
| 16.77 | 0.191 | 11 | 0.137 | 0.147 | 0.309 | -- | 1.3 | 0.132 | 6.33 | 30.34 | 992 | -- | -- |
| 16.87 | 0.191 | 11.1 | -0.0531 | 0.15 | 0.454 | -- | -- | 0.133 | 6.41 | 30.4 | 992 | -- | -- |
| 17.7 | 0.196 | 11 | 0.192 | -- | 0.243 | -- | 1.5 | 0.139 | -- | 30.45 | 1091 | -- | -- |
| 24.07 | 0.23 | 11.1 | 0.0506 | 0.13 | -- | -0.241 | -- | 0.0581 | 4.42 | -- | -- | -- | -- |
| 24.23 | 0.231 | 11.1 | 0.0524 | 0.128 | -- | -- | -- | 0.0593 | 4.21 | -- | -- | -- | -- |
| 17.78 | 0.196 | 11.1 | -0.0525 | -- | 0.402 | -- | -- | 0.13 | -- | 30.3 | 1095 | -- | -- |
| 16.94 | 0.192 | 11.1 | -- | 0.155 | 0.454 | -- | -- | 0.136 | 6.37 | 30.4 | 972 | -- | -- |
| 25.12 | 0.234 | 11.1 | 0.0576 | -- | -- | -- | -- | 0.0627 | -- | -- | -- | -- | -- |
| 24.3 | 0.231 | 11.1 | -- | 0.129 | -- | -- | -- | 0.0535 | 4.2 | -- | -- | -- | -- |
| 17.84 | 0.197 | 11.1 | -- | -- | 0.404 | -- | -- | 0.132 | -- | 30.36 | 1095 | -- | -- |
| 25.21 | 0.234 | 11.1 | -- | -- | -- | -- | -- | 0.0564 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
|
Histogram 
|
Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 16.77 | temperature | 30 | 720 | < th | dose independent | rect. | 15 | 14 |
| 2 | 16.78 | temperature | 30 | 720 | < th | dose independent | rect. | 15 | 21 |
| 3 | 16.84 | temperature | 30 | 720 | < th | dose independent | rect. | 15 | 5 |
| 6 | 16.97 | temperature | 30 | 720 | < th | dose independent | rect. | 24 | 19 |
| 8 | 17.01 | temperature | 30 | 720 | < th | dose independent | rect. | 8 | 19 |
| 12 | 17.07 | temperature | 30 | 720 | < th | dose independent | rect. | 9 | 10 |
| 34 | 17.23 | temperature | 30 | 720 | < th | dose independent | rect. | 11 | 16 |
| 37 | 17.24 | temperature | 30 | 720 | < th | dose independent | rect. | 11 | 9 |
| 42 | 17.25 | temperature | 25 | 4320 | > th | dose independent | rect. | 7 | 1 |
| 47 | 17.28 | temperature | 25 | 4320 | < th | dose independent | rect. | 7 | 1 |
| 70 | 17.38 | temperature | 30 | 720 | < th | dose independent | sin | 18 | NA |
| 81 | 17.42 | temperature | 30 | 720 | > th | dose independent | rect. | 11 | 8 |
| 97 | 17.44 | temperature | 30 | 720 | > th | dose independent | sin | 18 | NA |
| 109 | 17.46 | temperature | 25 | 1440 | > th | dose dependent | rect. | 18 | 1 |
| 151 | 17.49 | temperature | 25 | 1440 | > th | dose dependent | rect. | 6 | 3 |
| 169 | 17.52 | temperature | 30 | 1440 | > th | dose independent | rect. | 11 | 1 |
| 183 | 17.55 | temperature | 30 | 720 | < th | dose independent | rect. | 11 | 23 |
| 186 | 17.56 | temperature | 30 | 1440 | < th | dose independent | rect. | 11 | 1 |
| 187 | 17.56 | temperature | 30 | 1440 | < th | dose independent | rect. | 9 | 3 |
| 190 | 17.56 | temperature | 25 | 1440 | > th | dose dependent | rect. | 6 | 13 |
| 192 | 17.57 | temperature | 30 | 4320 | < th | dose independent | rect. | 15 | 1 |
| 193 | 17.57 | temperature | 30 | 4320 | > th | dose independent | rect. | 14 | 2 |
| 218 | 17.58 | temperature | 30 | 1440 | > th | dose dependent | rect. | 11 | 1 |
| 239 | 17.60 | temperature | 30 | 720 | > th | dose independent | rect. | 14 | 23 |
| 256 | 17.62 | temperature | 30 | 1440 | < th | dose independent | rect. | 3 | 9 |
| 259 | 17.62 | temperature | 30 | 1440 | < th | dose independent | rect. | 20 | 16 |
| 265 | 17.63 | temperature | 30 | 720 | > th | dose independent | no | NA | NA |
| 266 | 17.63 | temperature | 30 | 720 | < th | dose independent | no | NA | NA |
| 371 | 17.63 | temperature | 25 | 1440 | > th | dose dependent | sin | 1 | NA |
| 402 | 17.65 | temperature | 25 | 1440 | > th | dose dependent | rect. | 6 | 8 |
| 542 | 17.71 | temperature | 30 | 1440 | < th | dose independent | sin | 7 | NA |
| 544 | 17.71 | temperature | 30 | 1440 | < th | dose independent | sin | 5 | NA |
| 547 | 17.71 | radiation | 20 | 1440 | > th | dose independent | rect. | 16 | 1 |
| 602 | 17.71 | temperature | 25 | 1440 | > th | dose dependent | rect. | 15 | 22 |
| 629 | 17.73 | temperature | 30 | 720 | < th | dose independent | rect. | 2 | 23 |
| 645 | 17.73 | temperature | 25 | 720 | > th | dose dependent | rect. | 12 | 23 |
| 684 | 17.75 | temperature | 30 | 1440 | > th | dose independent | sin | 5 | NA |
| 690 | 17.75 | temperature | 25 | 1440 | > th | dose dependent | no | NA | NA |
| 736 | 17.76 | temperature | 30 | 1440 | > th | dose dependent | sin | 7 | NA |
| 789 | 17.77 | temperature | 25 | 1440 | > th | dose dependent | rect. | 10 | 23 |