BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os07g0508300 Os07g0508300|AK073874
(348 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT4G18060.1 | chr4:10027668-10029662 REVERSE LENGTH=352 427 e-120
AT4G34660.1 | chr4:16545595-16548294 REVERSE LENGTH=369 289 1e-78
AT1G31440.1 | chr1:11256150-11258479 REVERSE LENGTH=440 198 3e-51
AT4G39020.1 | chr4:18182315-18184340 FORWARD LENGTH=170 77 1e-14
>AT4G18060.1 | chr4:10027668-10029662 REVERSE LENGTH=352
Length = 351
Score = 427 bits (1098), Expect = e-120, Method: Compositional matrix adjust.
Identities = 202/342 (59%), Positives = 258/342 (75%), Gaps = 2/342 (0%)
Query: 1 MDVLRKQASKFKEXXXXXXXXXXXXFSTTGYEHSDAVVIDEVELQRHQQLEKLYTSTRSG 60
MD R+QASK ++ FS TGYE SD +VIDE+E+QRH QL+KLY STRS
Sbjct: 1 MDAFRRQASKLRDQVAKQQLAVIKQFSGTGYESSDVMVIDELEMQRHHQLDKLYRSTRSA 60
Query: 61 RDFQKDIVRAAEGLVSIGIRHVEVGTKFSEDCYRYGGESSAS--DEALAKAASLYGGALR 118
++FQ+DIV+AAE +IG+RH+E GTK SEDC RYG E+S + + LAKAA++YG A +
Sbjct: 61 KEFQRDIVKAAEAFTTIGLRHIEAGTKLSEDCCRYGNENSQNIDENILAKAAAIYGDARK 120
Query: 119 NVEKEYEEFNRILSSQTIDPLRAMAAGAPLEDARGLAQRYSRMRHEAEILSAEIARRKQR 178
+V+KE E+FN++L+SQ +DPLRAM AG+PLEDAR LAQRYSRMR EAE + E++RR+ R
Sbjct: 121 HVDKEQEDFNKLLASQVLDPLRAMVAGSPLEDARHLAQRYSRMRQEAETHATEVSRRQAR 180
Query: 179 VREAPLAEHTTKLQQSESKMIEHKASMAVLGKEXXXXXXXVESQQQRITLQRLVGMVEAE 238
VREAP+ E+ KLQ +E+KM E KA+MAVLGKE VESQQ R+T QRLV MVE E
Sbjct: 181 VREAPIPENVAKLQLAEAKMQELKANMAVLGKEATAALAAVESQQHRLTFQRLVAMVEGE 240
Query: 239 KLFHLRLAAILDDVEAEMSSEKQKRESAPPTIHSHKRAEKAQYFLAEAVHNFNGTTEKEL 298
K +HLR+AAIL D+EAEM +EKQ +ESAPP I + +EK YFLAE +H F+ +EKEL
Sbjct: 241 KNYHLRIAAILSDIEAEMVTEKQHKESAPPAIPTENGSEKTSYFLAEVIHPFSAASEKEL 300
Query: 299 SLIVGDYVVVRQIAPNGWAEGECKGVAGWFPAAYVERRENIP 340
L GDY+VVR+++ GWAEGECKG AGWFP AY+E+R+ +P
Sbjct: 301 DLDKGDYIVVRKVSQTGWAEGECKGKAGWFPMAYIEKRQRLP 342
>AT4G34660.1 | chr4:16545595-16548294 REVERSE LENGTH=369
Length = 368
Score = 289 bits (740), Expect = 1e-78, Method: Compositional matrix adjust.
Identities = 158/367 (43%), Positives = 221/367 (60%), Gaps = 26/367 (7%)
Query: 1 MDVLRKQASKFKEXXXXXXXXXXXXFSTTGYEHSDAVVIDEVELQRHQQLEKLYTSTRSG 60
MD +RKQAS+ +E F + + DE EL +HQ+LEKLY STR+
Sbjct: 1 MDAIRKQASRLREQVARQQQAVFKQFGGG---GYGSGLADEAELNQHQKLEKLYISTRAA 57
Query: 61 RDFQKDIVRAAEGLVSIGIRHVEVGTKFSEDCYRYGGESSASD-EALAKAASLYGGALRN 119
+ +Q+DIVR EG + G + VE+GTK SED +YG E++ ++ L +AA YG A
Sbjct: 58 KHYQRDIVRGVEGYIVTGSKQVEIGTKLSEDSRKYGSENTCTNGNVLTRAALNYGRARAQ 117
Query: 120 VEKEYEEFNRILSSQTIDPLRAMAAGAPLEDARGLAQRYSRMRHEAEILSAEIARRKQRV 179
+EKE + L +Q +PLRAM GAPLEDAR LAQRY RMR EAE + E+ARR+ +
Sbjct: 118 MEKERGNMLKALGTQVAEPLRAMVLGAPLEDARHLAQRYDRMRQEAEAQATEVARRQAKA 177
Query: 180 REAP-LAEHTTKLQQSESKMIEHKASMAVLGKEXXXXXXXVESQQQRITLQRLVGMVEAE 238
RE+ + KL+ +E+K+ + K++M +LGKE VE QQQ++TL+RL+ MVE+E
Sbjct: 178 RESQGNPDILMKLESAEAKLHDLKSNMTILGKEAASALASVEDQQQKLTLERLLSMVESE 237
Query: 239 KLFHLRLAAILDDVEAEMSSEKQKRESA-----------PPTIHSHKRAEKAQ------- 280
+ +H R+ ILD +E EM SE+Q+ E+ PP+ +Q
Sbjct: 238 RAYHQRVLQILDQLEGEMVSERQRIEAPSTPSSADSMPPPPSYEEANGVFASQMHDTSTD 297
Query: 281 ---YFLAEAVHNFNGTTEKELSLIVGDYVVVRQIAPNGWAEGECKGVAGWFPAAYVERRE 337
YFL E + ++G T+ ELSL G+YVVVR++ +GWAEGECKG AGWFP Y+ERRE
Sbjct: 298 SMGYFLGEVLFPYHGVTDVELSLSTGEYVVVRKVTGSGWAEGECKGKAGWFPYGYIERRE 357
Query: 338 NIPPNKV 344
+ +KV
Sbjct: 358 RVLASKV 364
>AT1G31440.1 | chr1:11256150-11258479 REVERSE LENGTH=440
Length = 439
Score = 198 bits (504), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 122/344 (35%), Positives = 187/344 (54%), Gaps = 36/344 (10%)
Query: 1 MDVLRKQASKFKEXXXXXXXXXXXXFSTTGYEHSDAVVIDEVELQRHQQLEKLYTSTRSG 60
M+ +RKQA+K +E G+ ++DAVV+DE EL HQ+L+ LY+ST++
Sbjct: 1 MEAIRKQAAKLREQVARQQQAVLKHL---GHVNADAVVVDEEELHCHQKLQDLYSSTKAA 57
Query: 61 RDFQKDIVRAAEGLVSIGIRHVEVGTKFSEDCYRYGGESSASDEALAKAASLYGGALRNV 120
+ Q++IVR EG ++ G + VE+G KF+ED +YG E+ ++ L++ A +G + ++V
Sbjct: 58 KRLQRNIVRGLEGFIATGTKVVEIGLKFAEDFKKYGDENPDANTPLSRVAHHFGTSYKSV 117
Query: 121 EKEYEEFNRILSSQTIDPLRAMAAGAPLEDARGLAQRYSRMRHEAEILSAEIARRKQRVR 180
E E E +LS Q +P+R M APLEDAR L Y R+R E E + ++ RR+ +++
Sbjct: 118 EGERETLLGVLSEQVCEPIRTMIYSAPLEDARHLVNHYDRLRQEVEAQATDVLRRRSKLK 177
Query: 181 EAPLAEHT-TKLQQSESKMIEHKASMAVLGKEXXXXXXXVESQQQRITLQRLVGMVEAEK 239
E+ ++E KL+ SES++ E K+SM LGKE V+ QQQ +T QRL +VEAE+
Sbjct: 178 ESDISEEAYIKLKNSESRLAELKSSMKTLGKEATKAMLEVDDQQQNVTSQRLRALVEAER 237
Query: 240 LFHLRLAAILDDVEAEMSSEKQKRESAPPTIHSHKRAEKAQYFLAEAVHNFNGTTEKELS 299
+H ILD + +EM +E+ EA+ G++ K L
Sbjct: 238 SYHRNALDILDKLHSEMIAEE------------------------EAI----GSSPKSLP 269
Query: 300 LIVGDYVVVRQIAPNGWAEGECKGVA-GWFPAAYVERRENIPPN 342
L + D + Q PN + GE K G A+ RRE I N
Sbjct: 270 LHIEDSASLPQQEPNSNSSGEIKSNPLGKIKAS---RREEIKSN 310
Score = 92.4 bits (228), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 40/76 (52%), Positives = 54/76 (71%), Gaps = 1/76 (1%)
Query: 271 HSHKR-AEKAQYFLAEAVHNFNGTTEKELSLIVGDYVVVRQIAPNGWAEGECKGVAGWFP 329
H+H+ ++ YFLA+ VH F+ ELSL V DYV+VRQ+A GW+EGE KG AGWFP
Sbjct: 357 HNHQLLSQNDSYFLAKVVHPFDAQAPGELSLAVDDYVIVRQVAGTGWSEGEYKGKAGWFP 416
Query: 330 AAYVERRENIPPNKVF 345
+AYVE++E P +K+
Sbjct: 417 SAYVEKQEKAPASKIV 432
>AT4G39020.1 | chr4:18182315-18184340 FORWARD LENGTH=170
Length = 169
Score = 77.4 bits (189), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 33/69 (47%), Positives = 46/69 (66%)
Query: 276 AEKAQYFLAEAVHNFNGTTEKELSLIVGDYVVVRQIAPNGWAEGECKGVAGWFPAAYVER 335
++ YFL E + + ++ ELSL VGDYVV+R++ + WAEGECKG AGWF Y+ER
Sbjct: 97 SDAMGYFLGEVMFPYQADSDFELSLSVGDYVVIREVVSSVWAEGECKGNAGWFTYIYIER 156
Query: 336 RENIPPNKV 344
R+ + KV
Sbjct: 157 RDRVFATKV 165
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.314 0.129 0.355
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 6,279,201
Number of extensions: 229703
Number of successful extensions: 697
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 691
Number of HSP's successfully gapped: 5
Length of query: 348
Length of database: 11,106,569
Length adjustment: 99
Effective length of query: 249
Effective length of database: 8,392,385
Effective search space: 2089703865
Effective search space used: 2089703865
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 112 (47.8 bits)