BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os07g0508300 Os07g0508300|AK073874
(348 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os07g0508300 Similar to SH3 domain-containing protein 3 671 0.0
Os10g0512700 Similar to SH3 domain-containing protein 3 297 7e-81
Os03g0266700 Src homology-3 domain containing protein 265 4e-71
Os04g0539800 Src homology-3 domain containing protein 86 5e-17
>Os07g0508300 Similar to SH3 domain-containing protein 3
Length = 348
Score = 671 bits (1732), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 329/348 (94%), Positives = 329/348 (94%)
Query: 1 MDVLRKQASKFKEXXXXXXXXXXXXFSTTGYEHSDAVVIDEVELQRHQQLEKLYTSTRSG 60
MDVLRKQASKFKE FSTTGYEHSDAVVIDEVELQRHQQLEKLYTSTRSG
Sbjct: 1 MDVLRKQASKFKEQVAKQQQAVIKQFSTTGYEHSDAVVIDEVELQRHQQLEKLYTSTRSG 60
Query: 61 RDFQKDIVRAAEGLVSIGIRHVEVGTKFSEDCYRYGGESSASDEALAKAASLYGGALRNV 120
RDFQKDIVRAAEGLVSIGIRHVEVGTKFSEDCYRYGGESSASDEALAKAASLYGGALRNV
Sbjct: 61 RDFQKDIVRAAEGLVSIGIRHVEVGTKFSEDCYRYGGESSASDEALAKAASLYGGALRNV 120
Query: 121 EKEYEEFNRILSSQTIDPLRAMAAGAPLEDARGLAQRYSRMRHEAEILSAEIARRKQRVR 180
EKEYEEFNRILSSQTIDPLRAMAAGAPLEDARGLAQRYSRMRHEAEILSAEIARRKQRVR
Sbjct: 121 EKEYEEFNRILSSQTIDPLRAMAAGAPLEDARGLAQRYSRMRHEAEILSAEIARRKQRVR 180
Query: 181 EAPLAEHTTKLQQSESKMIEHKASMAVLGKEXXXXXXXVESQQQRITLQRLVGMVEAEKL 240
EAPLAEHTTKLQQSESKMIEHKASMAVLGKE VESQQQRITLQRLVGMVEAEKL
Sbjct: 181 EAPLAEHTTKLQQSESKMIEHKASMAVLGKEAAAALAAVESQQQRITLQRLVGMVEAEKL 240
Query: 241 FHLRLAAILDDVEAEMSSEKQKRESAPPTIHSHKRAEKAQYFLAEAVHNFNGTTEKELSL 300
FHLRLAAILDDVEAEMSSEKQKRESAPPTIHSHKRAEKAQYFLAEAVHNFNGTTEKELSL
Sbjct: 241 FHLRLAAILDDVEAEMSSEKQKRESAPPTIHSHKRAEKAQYFLAEAVHNFNGTTEKELSL 300
Query: 301 IVGDYVVVRQIAPNGWAEGECKGVAGWFPAAYVERRENIPPNKVFPQA 348
IVGDYVVVRQIAPNGWAEGECKGVAGWFPAAYVERRENIPPNKVFPQA
Sbjct: 301 IVGDYVVVRQIAPNGWAEGECKGVAGWFPAAYVERRENIPPNKVFPQA 348
>Os10g0512700 Similar to SH3 domain-containing protein 3
Length = 370
Score = 297 bits (761), Expect = 7e-81, Method: Compositional matrix adjust.
Identities = 160/368 (43%), Positives = 225/368 (61%), Gaps = 26/368 (7%)
Query: 1 MDVLRKQASKFKEXXXXXXXXXXXXFSTTGYEHSDAVVIDEVELQRHQQLEKLYTSTRSG 60
M+ +RKQASK +E F GY +D DE E Q+H +LEKLY STR+
Sbjct: 1 MEAIRKQASKLREQVARQQQAVMKQFGG-GY-GADGAFADEAEAQQHSKLEKLYISTRAA 58
Query: 61 RDFQKDIVRAAEGLVSIGIRHVEVGTKFSEDCYRYGGESSA-SDEALAKAASLYGGALRN 119
+ FQ+DIVR EG + G + VE+G K ED +YG E++ S L+KAA + A
Sbjct: 59 KHFQRDIVRGVEGYIVTGSKQVEIGNKLCEDGKKYGAENTCTSGSTLSKAALCFAKARSL 118
Query: 120 VEKEYEEFNRILSSQTIDPLRAMAAGAPLEDARGLAQRYSRMRHEAEILSAEIARRKQRV 179
+EKE + L +Q +PLRAM GAPLEDAR LAQRY RMR EAE + E+++R+ ++
Sbjct: 119 MEKERGNLLKALGTQVAEPLRAMVMGAPLEDARHLAQRYDRMRQEAEAQAIEVSKRQMKL 178
Query: 180 REAP-LAEHTTKLQQSESKMIEHKASMAVLGKEXXXXXXXVESQQQRITLQRLVGMVEAE 238
RE + ++L+ +ESK+ E K++M VLGKE VE+QQQR+TLQRL+ MVE+E
Sbjct: 179 RETSGNGDMISRLEAAESKLQELKSNMGVLGKEAVASMTAVEAQQQRLTLQRLIAMVESE 238
Query: 239 KLFHLRLAAILDDVEAEMSSEKQKRESAPP-TIHSH---------------------KRA 276
+ +H R+ ILD +E EM SE+Q+ E APP + S +
Sbjct: 239 RSYHQRVLQILDQLEREMVSERQRIEGAPPPAVESSMPPPPSYEEINGVFMRNPTVAELV 298
Query: 277 EKAQYFLAEAVHNFNGTTEKELSLIVGDYVVVRQIAPNGWAEGECKGVAGWFPAAYVERR 336
E ++FLAEA+ ++ +E EL+L GDY+VVR+++ NGWAEGEC+G AGWFP Y+E+R
Sbjct: 299 ETVEFFLAEAIQSYRAESETELNLAAGDYIVVRKVSNNGWAEGECRGKAGWFPYDYIEKR 358
Query: 337 ENIPPNKV 344
+ + +KV
Sbjct: 359 DRVLASKV 366
>Os03g0266700 Src homology-3 domain containing protein
Length = 394
Score = 265 bits (677), Expect = 4e-71, Method: Compositional matrix adjust.
Identities = 145/389 (37%), Positives = 213/389 (54%), Gaps = 46/389 (11%)
Query: 1 MDVLRKQASKFKEXXXXXXXXXXXXFSTTGYEHSDAVVIDEVELQRHQQLEKLYTSTRSG 60
M+ LRKQASK +E FS + D ++DE EL+ HQ L++LY STR+
Sbjct: 1 METLRKQASKLREHVAKQQQAVRKQFS--ARYNQDPSLVDEAELECHQNLQRLYNSTRAA 58
Query: 61 RDFQKDIVRAAEGLVSIGIRHVEVGTKFSEDCYRYGGESSASDEALAKAASLYGGALRNV 120
+ FQ+ IVR EG +++ + +E+ K +EDC RYG ++ LA+A+ +G + +
Sbjct: 59 KHFQRSIVRGVEGFIAVSTKQMEIVKKLAEDCCRYGNDNQNFGFILARASVEFGNSHSQM 118
Query: 121 EKEYEEFNRILSSQTIDPLRAMAAGAPLEDARGLAQRYSRMRHEAEILSAEIARRKQRVR 180
EKE E + L Q +PLR M APLEDAR L RY R+R + E A++ R++ + +
Sbjct: 119 EKERENLLKFLGEQVFEPLREMIMSAPLEDARLLTYRYQRIRQDMESQIADVMRKQLKSK 178
Query: 181 EAP-LAEHTTKLQQSESKMIEHKASMAVLGKEXXXXXXXVESQQQRITLQRLVGMVEAEK 239
E+ A+++ KLQ +ESK+ E + +++ LG+E VE QQQ++T RL+ MV+AE+
Sbjct: 179 ESSGNADNSVKLQHAESKLSELRTTLSALGREATAAMEAVEVQQQQVTFDRLLAMVDAER 238
Query: 240 LFHLRLAAILDDVEAEMSSEKQKRE---------SAPPT--IHSHKRAEKAQ-------- 280
+H A IL+ + EM K E S P T H H R+
Sbjct: 239 AYHQNAADILNKLHDEMVQAKHHDEPENHYDETSSDPKTAATHEHSRSTSEDHIFTNTSE 298
Query: 281 ------------------------YFLAEAVHNFNGTTEKELSLIVGDYVVVRQIAPNGW 316
+++ E +H F+ + ELS+ VGDYVVVRQ+APNGW
Sbjct: 299 PTRTETSEPTRTETSEPTRNGQEVHYVGEVIHPFDAQADGELSISVGDYVVVRQVAPNGW 358
Query: 317 AEGECKGVAGWFPAAYVERRENIPPNKVF 345
+EGECKG AGWFP+AYVE+R+ P +KV
Sbjct: 359 SEGECKGKAGWFPSAYVEQRDKAPASKVI 387
>Os04g0539800 Src homology-3 domain containing protein
Length = 115
Score = 85.5 bits (210), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 37/64 (57%), Positives = 48/64 (75%)
Query: 281 YFLAEAVHNFNGTTEKELSLIVGDYVVVRQIAPNGWAEGECKGVAGWFPAAYVERRENIP 340
+FL EA+ +F +E EL+L GD V+VR+I+ NGWAEGECKG AGWFP Y+ERRE +
Sbjct: 48 FFLGEALDSFKAESESELNLSAGDIVIVRKISTNGWAEGECKGKAGWFPHGYIERRERVL 107
Query: 341 PNKV 344
+KV
Sbjct: 108 ASKV 111
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.314 0.129 0.355
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 10,045,299
Number of extensions: 373953
Number of successful extensions: 1233
Number of sequences better than 1.0e-10: 4
Number of HSP's gapped: 1227
Number of HSP's successfully gapped: 5
Length of query: 348
Length of database: 17,035,801
Length adjustment: 102
Effective length of query: 246
Effective length of database: 11,709,973
Effective search space: 2880653358
Effective search space used: 2880653358
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 156 (64.7 bits)