Os04g0539800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Src homology-3 domain containing protein.
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Os04g0539800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Src homology-3 domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 25.33 | 0.236 | 12.4 | 0.502 | 0.505 | -0.633 | -0.0456 | -0.713 | 0.46 | 2.96 | 80 | 1419 | -- | -- |
| 25.75 | 0.236 | 12.4 | 0.558 | 0.492 | -0.676 | -0.0455 | -- | 0.472 | 2.96 | 79.82 | 1430 | -- | -- |
| 25.33 | 0.234 | 12.4 | 0.503 | 0.507 | -0.634 | -- | -0.714 | 0.461 | 2.95 | 79.98 | 1413 | -- | -- |
| 25.75 | 0.236 | 12.4 | 0.559 | 0.493 | -0.677 | -- | -- | 0.473 | 2.97 | 79.78 | 1430 | -- | -- |
| 31.09 | 0.261 | 12.4 | 0.567 | -- | -0.345 | -- | -0.177 | 0.451 | -- | 79.98 | 1413 | -- | -- |
| 31.15 | 0.262 | 12.4 | 0.537 | 0.485 | -- | -0.133 | -- | 0.434 | 2.86 | -- | -- | -- | -- |
| 31.21 | 0.262 | 12.4 | 0.54 | 0.485 | -- | -- | -- | 0.434 | 2.86 | -- | -- | -- | -- |
| 30.96 | 0.26 | 12.4 | 0.596 | -- | -0.354 | -- | -- | 0.438 | -- | 77.99 | 3295 | -- | -- |
| 34.16 | 0.272 | 12.4 | -- | 0.503 | -0.605 | -- | -- | 0.451 | 2.97 | 79.52 | 1447 | -- | -- |
| 44.8 | 0.313 | 12.4 | 0.561 | -- | -- | -- | -- | 0.447 | -- | -- | -- | -- | -- |
| 38.91 | 0.292 | 12.4 | -- | 0.496 | -- | -- | -- | 0.374 | 2.87 | -- | -- | -- | -- |
| 39.93 | 0.295 | 12.4 | -- | -- | -0.341 | -- | -- | 0.389 | -- | 79.52 | 1447 | -- | -- |
| 53.1 | 0.34 | 12.4 | -- | -- | -- | -- | -- | 0.385 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 24.64 | humidity | 80.0 | 1440 | < th | dose independent | rect. | 11 | 1 |
| 2 | 24.72 | humidity | 80.0 | 1440 | > th | dose independent | rect. | 11 | 1 |
| 4 | 24.81 | humidity | 70.0 | 1440 | > th | dose dependent | rect. | 11 | 1 |
| 6 | 24.93 | humidity | 80.0 | 1440 | < th | dose independent | rect. | 19 | 20 |
| 8 | 24.98 | humidity | 70.0 | 1440 | > th | dose dependent | rect. | 10 | 3 |
| 11 | 25.02 | humidity | 80.0 | 1440 | > th | dose independent | rect. | 19 | 21 |
| 12 | 25.03 | humidity | 80.0 | 1440 | < th | dose independent | sin | 3 | NA |
| 14 | 25.07 | humidity | 80.0 | 1440 | > th | dose independent | sin | 3 | NA |
| 16 | 25.08 | humidity | 80.0 | 1440 | > th | dose independent | rect. | 10 | 3 |
| 19 | 25.09 | humidity | 80.0 | 1440 | < th | dose independent | rect. | 3 | 11 |
| 34 | 25.15 | humidity | 80.0 | 1440 | < th | dose independent | rect. | 23 | 16 |
| 38 | 25.17 | humidity | 80.0 | 1440 | > th | dose independent | rect. | 23 | 16 |
| 45 | 25.19 | humidity | 80.0 | 1440 | > th | dose independent | rect. | 3 | 11 |
| 54 | 25.20 | humidity | 80.0 | 1440 | > th | dose independent | rect. | 1 | 14 |
| 61 | 25.21 | humidity | 80.0 | 1440 | > th | dose independent | rect. | 23 | 22 |
| 70 | 25.22 | humidity | 80.0 | 1440 | < th | dose independent | rect. | 16 | 22 |
| 84 | 25.24 | humidity | 80.0 | 1440 | < th | dose independent | rect. | 22 | 22 |
| 91 | 25.25 | humidity | 70.0 | 1440 | > th | dose dependent | rect. | 2 | 13 |
| 141 | 25.31 | humidity | 80.0 | 1440 | < th | dose independent | rect. | 6 | 21 |
| 142 | 25.31 | humidity | 70.0 | 1440 | > th | dose dependent | sin | 3 | NA |
| 155 | 25.32 | humidity | 80.0 | 1440 | > th | dose independent | rect. | 15 | 23 |
| 171 | 25.34 | humidity | 80.0 | 1440 | < th | dose independent | no | NA | NA |
| 194 | 25.35 | humidity | 80.0 | 1440 | < th | dose independent | rect. | 1 | 23 |
| 224 | 25.38 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 17 | 1 |
| 227 | 25.38 | humidity | 80.0 | 1440 | > th | dose independent | rect. | 6 | 20 |
| 237 | 25.38 | humidity | 80.0 | 1440 | > th | dose independent | rect. | 1 | 23 |
| 243 | 25.39 | humidity | 80.0 | 1440 | > th | dose independent | no | NA | NA |
| 289 | 25.42 | humidity | 70.0 | 1440 | > th | dose dependent | rect. | 9 | 5 |
| 306 | 25.43 | precipitation | 0.1 | 1440 | > th | dose dependent | rect. | 5 | 3 |
| 317 | 25.44 | humidity | 70.0 | 1440 | > th | dose dependent | rect. | 1 | 18 |
| 355 | 25.47 | humidity | 60.0 | 1440 | > th | dose dependent | rect. | 23 | 17 |
| 360 | 25.48 | humidity | 70.0 | 1440 | < th | dose independent | rect. | 11 | 7 |
| 382 | 25.49 | humidity | 70.0 | 720 | > th | dose dependent | rect. | 24 | 21 |
| 434 | 25.53 | humidity | 70.0 | 1440 | > th | dose independent | rect. | 11 | 7 |
| 478 | 25.57 | precipitation | 0.1 | 1440 | > th | dose independent | rect. | 5 | 2 |
| 484 | 25.57 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 17 | 1 |
| 535 | 25.61 | precipitation | 0.1 | 1440 | > th | dose dependent | rect. | 5 | 8 |
| 548 | 25.62 | precipitation | 0.1 | 1440 | > th | dose dependent | rect. | 5 | 6 |
| 555 | 25.63 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 17 | 1 |
| 559 | 25.63 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 17 | 1 |
| 593 | 25.66 | precipitation | 0.1 | 1440 | < th | dose independent | rect. | 5 | 1 |
| 604 | 25.66 | precipitation | 0.1 | 1440 | < th | dose dependent | rect. | 5 | 1 |
| 643 | 25.69 | precipitation | 0.1 | 1440 | < th | dose independent | rect. | 5 | 3 |
| 645 | 25.69 | precipitation | 0.1 | 1440 | < th | dose dependent | rect. | 5 | 3 |
| 728 | 25.73 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 5 | 12 |
| 793 | 25.78 | precipitation | 0.1 | 1440 | < th | dose independent | rect. | 5 | 7 |
| 800 | 25.78 | precipitation | 0.1 | 1440 | < th | dose dependent | rect. | 5 | 7 |
| 805 | 25.79 | humidity | 90.0 | 1440 | < th | dose dependent | sin | 6 | NA |
| 810 | 25.79 | humidity | 90.0 | 1440 | < th | dose dependent | rect. | 23 | 15 |
| 819 | 25.79 | humidity | 60.0 | 1440 | > th | dose dependent | rect. | 7 | 23 |
| 822 | 25.80 | humidity | 60.0 | 1440 | > th | dose dependent | no | NA | NA |
| 825 | 25.80 | humidity | 90.0 | 1440 | < th | dose dependent | rect. | 22 | 18 |
| 829 | 25.80 | humidity | 90.0 | 1440 | < th | dose dependent | rect. | 19 | 21 |
| 849 | 25.81 | humidity | 60.0 | 1440 | > th | dose dependent | rect. | 9 | 23 |
| 852 | 25.82 | precipitation | 0.1 | 1440 | > th | dose independent | rect. | 5 | 8 |
| 876 | 25.83 | precipitation | 0.1 | 1440 | > th | dose independent | rect. | 5 | 6 |
| 906 | 25.84 | humidity | 70.0 | 1440 | < th | dose independent | rect. | 15 | 3 |
| 958 | 25.85 | humidity | 60.0 | 1440 | > th | dose dependent | rect. | 5 | 23 |
| 962 | 25.86 | wind | 1.0 | 43200 | > th | dose independent | rect. | 5 | 1 |