Os03g0266700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Src homology-3 domain containing protein.
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Os03g0266700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Src homology-3 domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 18.67 | 0.203 | 9.09 | 0.359 | 0.445 | 0.992 | 0.375 | 0.939 | 0.112 | 22.1 | 22.85 | 149 | -- | -- |
| 19.72 | 0.207 | 9.08 | 0.42 | 0.453 | 0.797 | 0.472 | -- | 0.132 | 22.4 | 23.1 | 176 | -- | -- |
| 19.19 | 0.204 | 9.1 | 0.333 | 0.436 | 1.02 | -- | 1.1 | 0.111 | 22.1 | 22.83 | 138 | -- | -- |
| 20.62 | 0.212 | 9.08 | 0.428 | 0.451 | 0.79 | -- | -- | 0.129 | 22.3 | 23.35 | 132 | -- | -- |
| 28.77 | 0.251 | 9.08 | 0.335 | -- | 1.1 | -- | 1.13 | 0.134 | -- | 23.42 | 25 | -- | -- |
| 27.38 | 0.245 | 9.11 | 0.273 | 0.517 | -- | 0.484 | -- | 0.0208 | 22.9 | -- | -- | -- | -- |
| 28.36 | 0.249 | 9.11 | 0.253 | 0.515 | -- | -- | -- | 0.0192 | 22.9 | -- | -- | -- | -- |
| 30.74 | 0.259 | 9.06 | 0.469 | -- | 0.942 | -- | -- | 0.17 | -- | 23.97 | 9 | -- | -- |
| 25.13 | 0.235 | 9.1 | -- | 0.439 | 0.595 | -- | -- | 0.0592 | 22.5 | 23.26 | 148 | -- | -- |
| 44.78 | 0.313 | 9.09 | 0.264 | -- | -- | -- | -- | 0.0226 | -- | -- | -- | -- | -- |
| 30.05 | 0.256 | 9.11 | -- | 0.517 | -- | -- | -- | -0.00902 | 22.9 | -- | -- | -- | -- |
| 36.07 | 0.281 | 9.08 | -- | -- | 0.813 | -- | -- | 0.0902 | -- | 23.5 | 10 | -- | -- |
| 46.62 | 0.319 | 9.1 | -- | -- | -- | -- | -- | -0.00672 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 18.20 | temperature | 25 | 270 | < th | dose dependent | rect. | 16 | 16 |
| 28 | 18.74 | temperature | 30 | 270 | < th | dose dependent | sin | 10 | NA |
| 39 | 18.87 | temperature | 10 | 270 | > th | dose dependent | sin | 10 | NA |
| 45 | 18.92 | temperature | 15 | 270 | > th | dose dependent | rect. | 19 | 10 |
| 69 | 19.10 | temperature | 25 | 720 | < th | dose dependent | rect. | 13 | 12 |
| 72 | 19.13 | temperature | 25 | 720 | < th | dose dependent | rect. | 15 | 9 |
| 129 | 19.35 | temperature | 25 | 720 | < th | dose dependent | sin | 17 | NA |
| 164 | 19.45 | temperature | 25 | 90 | < th | dose dependent | rect. | 23 | 23 |
| 196 | 19.58 | temperature | 25 | 90 | < th | dose dependent | no | NA | NA |
| 217 | 19.64 | temperature | 20 | 270 | > th | dose independent | rect. | 7 | 23 |
| 232 | 19.67 | temperature | 10 | 720 | > th | dose dependent | rect. | 18 | 8 |
| 235 | 19.67 | temperature | 25 | 90 | < th | dose dependent | rect. | 19 | 23 |
| 255 | 19.71 | temperature | 25 | 90 | < th | dose dependent | rect. | 1 | 23 |
| 280 | 19.77 | temperature | 20 | 270 | > th | dose independent | rect. | 17 | 23 |
| 328 | 19.85 | temperature | 25 | 90 | < th | dose dependent | rect. | 21 | 23 |
| 337 | 19.87 | temperature | 25 | 720 | < th | dose dependent | rect. | 19 | 2 |
| 348 | 19.88 | temperature | 25 | 30 | < th | dose dependent | rect. | 5 | 23 |
| 359 | 19.90 | temperature | 25 | 30 | < th | dose dependent | rect. | 3 | 23 |
| 381 | 19.93 | temperature | 25 | 30 | < th | dose dependent | rect. | 7 | 23 |
| 542 | 20.14 | temperature | 20 | 270 | < th | dose independent | rect. | 9 | 22 |
| 556 | 20.16 | temperature | 20 | 270 | < th | dose independent | rect. | 23 | 23 |
| 599 | 20.22 | temperature | 20 | 270 | < th | dose independent | rect. | 16 | 20 |
| 624 | 20.25 | temperature | 20 | 270 | > th | dose independent | rect. | 19 | 10 |
| 643 | 20.27 | temperature | 20 | 270 | > th | dose independent | no | NA | NA |
| 693 | 20.32 | temperature | 20 | 270 | < th | dose independent | no | NA | NA |
| 708 | 20.34 | temperature | 20 | 270 | < th | dose independent | rect. | 16 | 15 |
| 835 | 20.46 | temperature | 20 | 270 | < th | dose independent | rect. | 5 | 23 |
| 905 | 20.54 | temperature | 20 | 270 | > th | dose independent | sin | 10 | NA |
| 992 | 20.65 | temperature | 20 | 270 | < th | dose independent | sin | 11 | NA |