BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os10g0503100 Os10g0503100|AK072520
(224 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os10g0503100 Similar to Transcription factor L2 392 e-110
Os02g0641000 Similar to Transcription factor L2 278 2e-75
Os04g0532500 Similar to Transcription factor L2 266 1e-71
Os03g0266100 LIM, zinc-binding domain containing protein 212 2e-55
Os06g0237300 Similar to LIM domain protein WLIM-1 183 1e-46
Os12g0510900 Similar to LIM domain protein WLIM-1 96 3e-20
>Os10g0503100 Similar to Transcription factor L2
Length = 224
Score = 392 bits (1007), Expect = e-110, Method: Compositional matrix adjust.
Identities = 187/187 (100%), Positives = 187/187 (100%)
Query: 1 MTFSGTQDKCNACDKTVHFIDLLTADSIPYHKSCFRCSHCKGTLSMCSYSSMDGVLYCKT 60
MTFSGTQDKCNACDKTVHFIDLLTADSIPYHKSCFRCSHCKGTLSMCSYSSMDGVLYCKT
Sbjct: 1 MTFSGTQDKCNACDKTVHFIDLLTADSIPYHKSCFRCSHCKGTLSMCSYSSMDGVLYCKT 60
Query: 61 HFEQLFKETGTFKKNFPSGTKANSEQAKIPSKLSSVFCGTQDKCTACKKTVYPLEKMTME 120
HFEQLFKETGTFKKNFPSGTKANSEQAKIPSKLSSVFCGTQDKCTACKKTVYPLEKMTME
Sbjct: 61 HFEQLFKETGTFKKNFPSGTKANSEQAKIPSKLSSVFCGTQDKCTACKKTVYPLEKMTME 120
Query: 121 GECYHRTCFKCAHGGCLLTNASYASHNGILYCQNHFWQLFKKSGSYDNLLKPASAAAENT 180
GECYHRTCFKCAHGGCLLTNASYASHNGILYCQNHFWQLFKKSGSYDNLLKPASAAAENT
Sbjct: 121 GECYHRTCFKCAHGGCLLTNASYASHNGILYCQNHFWQLFKKSGSYDNLLKPASAAAENT 180
Query: 181 VESEVAV 187
VESEVAV
Sbjct: 181 VESEVAV 187
>Os02g0641000 Similar to Transcription factor L2
Length = 206
Score = 278 bits (711), Expect = 2e-75, Method: Compositional matrix adjust.
Identities = 128/185 (69%), Positives = 158/185 (85%), Gaps = 2/185 (1%)
Query: 1 MTFSGTQDKCNACDKTVHFIDLLTADSIPYHKSCFRCSHCKGTLSMCSYSSMDGVLYCKT 60
M+F+GTQDKC ACDKTVHFIDLLTAD + YHK+CF+CSHCKGTLSMC+YSSMDGVLYCKT
Sbjct: 1 MSFTGTQDKCKACDKTVHFIDLLTADGVSYHKTCFKCSHCKGTLSMCNYSSMDGVLYCKT 60
Query: 61 HFEQLFKETGTFKKNFPSGTKAN--SEQAKIPSKLSSVFCGTQDKCTACKKTVYPLEKMT 118
HFEQLFKETG+F K F G K++ S+Q + PSKLSS F GTQDKC AC+KTVYPLEK+T
Sbjct: 61 HFEQLFKETGSFSKKFSQGGKSSEKSDQGRAPSKLSSAFSGTQDKCAACQKTVYPLEKLT 120
Query: 119 MEGECYHRTCFKCAHGGCLLTNASYASHNGILYCQNHFWQLFKKSGSYDNLLKPASAAAE 178
+EGE YH++CFKC+HGGC+LT +SYA+ NGILYC+ HF QLFK+ GSY++L++ A + +
Sbjct: 121 LEGESYHKSCFKCSHGGCILTTSSYAALNGILYCKIHFSQLFKEKGSYNHLIQTAQSKQK 180
Query: 179 NTVES 183
+ E+
Sbjct: 181 ESEEA 185
>Os04g0532500 Similar to Transcription factor L2
Length = 201
Score = 266 bits (679), Expect = 1e-71, Method: Compositional matrix adjust.
Identities = 122/176 (69%), Positives = 150/176 (85%), Gaps = 1/176 (0%)
Query: 1 MTFSGTQDKCNACDKTVHFIDLLTADSIPYHKSCFRCSHCKGTLSMCSYSSMDGVLYCKT 60
M+F+GTQDKC ACDKTVHFIDLLTAD +PYHK+CF+CSHCKG LSMCSYSSMDGVLYCKT
Sbjct: 1 MSFTGTQDKCTACDKTVHFIDLLTADGVPYHKTCFKCSHCKGILSMCSYSSMDGVLYCKT 60
Query: 61 HFEQLFKETGTFKKNFPSGTKA-NSEQAKIPSKLSSVFCGTQDKCTACKKTVYPLEKMTM 119
HFEQLFKETG+F K F G ++ + E A+ PSK+ S F GTQDKC AC+KTVYPLEK+T+
Sbjct: 61 HFEQLFKETGSFSKKFAPGCRSTDKELARAPSKICSAFSGTQDKCAACQKTVYPLEKLTL 120
Query: 120 EGECYHRTCFKCAHGGCLLTNASYASHNGILYCQNHFWQLFKKSGSYDNLLKPASA 175
EGE YH++CFKC+HGGC+LT +SYA+ NG+LYC+ HF QLF + GSY+++ K + +
Sbjct: 121 EGESYHKSCFKCSHGGCILTTSSYAALNGVLYCKIHFGQLFMEKGSYNHMKKKSES 176
Score = 88.2 bits (217), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 40/85 (47%), Positives = 59/85 (69%)
Query: 97 FCGTQDKCTACKKTVYPLEKMTMEGECYHRTCFKCAHGGCLLTNASYASHNGILYCQNHF 156
F GTQDKCTAC KTV+ ++ +T +G YH+TCFKC+H +L+ SY+S +G+LYC+ HF
Sbjct: 3 FTGTQDKCTACDKTVHFIDLLTADGVPYHKTCFKCSHCKGILSMCSYSSMDGVLYCKTHF 62
Query: 157 WQLFKKSGSYDNLLKPASAAAENTV 181
QLFK++GS+ P + + +
Sbjct: 63 EQLFKETGSFSKKFAPGCRSTDKEL 87
>Os03g0266100 LIM, zinc-binding domain containing protein
Length = 196
Score = 212 bits (540), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 98/178 (55%), Positives = 134/178 (75%), Gaps = 5/178 (2%)
Query: 3 FSGTQDKCNACDKTVHFIDLLTADSIPYHKSCFRCSHCKGTLSMCSYSSMDGVLYCKTHF 62
FSGTQ KC C KTV+ +D L+ D + +H+SCF+C HCK TLS+ +YSS++GV YCK HF
Sbjct: 2 FSGTQQKCKVCTKTVYPMDQLSTDGVVFHRSCFKCQHCKSTLSLGNYSSIEGVPYCKPHF 61
Query: 63 EQLFKETGTFKKNF-----PSGTKANSEQAKIPSKLSSVFCGTQDKCTACKKTVYPLEKM 117
EQLFKETG++ K+F P+ K E + PSK + +F GTQ+KC C KT YPLEK+
Sbjct: 62 EQLFKETGSYNKSFQSPAKPASEKLTPELTRSPSKAARMFSGTQEKCATCSKTAYPLEKV 121
Query: 118 TMEGECYHRTCFKCAHGGCLLTNASYASHNGILYCQNHFWQLFKKSGSYDNLLKPASA 175
T+EG+ YH++CFKC+HGGC ++ ++YA+ GILYC++HF QLFK+ GSY++L+K AS
Sbjct: 122 TVEGQAYHKSCFKCSHGGCAISPSNYAALEGILYCKHHFSQLFKEKGSYNHLIKCASV 179
Score = 86.3 bits (212), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 39/85 (45%), Positives = 58/85 (68%), Gaps = 1/85 (1%)
Query: 96 VFCGTQDKCTACKKTVYPLEKMTMEGECYHRTCFKCAHGGCLLTNASYASHNGILYCQNH 155
+F GTQ KC C KTVYP+++++ +G +HR+CFKC H L+ +Y+S G+ YC+ H
Sbjct: 1 MFSGTQQKCKVCTKTVYPMDQLSTDGVVFHRSCFKCQHCKSTLSLGNYSSIEGVPYCKPH 60
Query: 156 FWQLFKKSGSYDNLLK-PASAAAEN 179
F QLFK++GSY+ + PA A+E
Sbjct: 61 FEQLFKETGSYNKSFQSPAKPASEK 85
>Os06g0237300 Similar to LIM domain protein WLIM-1
Length = 1303
Score = 183 bits (464), Expect = 1e-46, Method: Composition-based stats.
Identities = 81/172 (47%), Positives = 118/172 (68%), Gaps = 5/172 (2%)
Query: 3 FSGTQDKCNACDKTVHFIDLLTADSIPYHKSCFRCSHCKGTLSMCSYSSMDGVLYCKTHF 62
+ GT KC++C +TV+ ++ L AD YH+ CFRC+HCK TL +YSS++GVLYCK H+
Sbjct: 6 WGGTTQKCDSCGRTVYPVEELAADGRVYHRPCFRCTHCKATLQFSNYSSVEGVLYCKPHY 65
Query: 63 EQLFKETGTFKKNFPSGTK-ANSEQAK----IPSKLSSVFCGTQDKCTACKKTVYPLEKM 117
+Q+ K TG+ +K+F +K A +E++ P++ SS+F GTQDKC C KTVYPLEK+
Sbjct: 66 DQILKSTGSLEKSFEGTSKSAKAEKSNGNKGQPNRFSSMFVGTQDKCVVCNKTVYPLEKV 125
Query: 118 TMEGECYHRTCFKCAHGGCLLTNASYASHNGILYCQNHFWQLFKKSGSYDNL 169
+ G YH++CF+C HGGC L+ ++ +H G LYC+ H QLF G++ N
Sbjct: 126 NLNGSSYHKSCFRCTHGGCTLSPSNNVTHEGKLYCKTHHSQLFMVKGNFSNF 177
Score = 77.4 bits (189), Expect = 7e-15, Method: Composition-based stats.
Identities = 32/85 (37%), Positives = 54/85 (63%)
Query: 94 SSVFCGTQDKCTACKKTVYPLEKMTMEGECYHRTCFKCAHGGCLLTNASYASHNGILYCQ 153
++ + GT KC +C +TVYP+E++ +G YHR CF+C H L ++Y+S G+LYC+
Sbjct: 3 AAAWGGTTQKCDSCGRTVYPVEELAADGRVYHRPCFRCTHCKATLQFSNYSSVEGVLYCK 62
Query: 154 NHFWQLFKKSGSYDNLLKPASAAAE 178
H+ Q+ K +GS + + S +A+
Sbjct: 63 PHYDQILKSTGSLEKSFEGTSKSAK 87
Score = 74.7 bits (182), Expect = 5e-14, Method: Composition-based stats.
Identities = 38/78 (48%), Positives = 48/78 (61%), Gaps = 1/78 (1%)
Query: 3 FSGTQDKCNACDKTVHFIDLLTADSIPYHKSCFRCSHCKGTLSMCSYSSMDGVLYCKTHF 62
F GTQDKC C+KTV+ ++ + + YHKSCFRC+H TLS + + +G LYCKTH
Sbjct: 105 FVGTQDKCVVCNKTVYPLEKVNLNGSSYHKSCFRCTHGGCTLSPSNNVTHEGKLYCKTHH 164
Query: 63 EQLFKETGTFKKNFPSGT 80
QLF G F NF T
Sbjct: 165 SQLFMVKGNF-SNFEDST 181
>Os12g0510900 Similar to LIM domain protein WLIM-1
Length = 101
Score = 95.5 bits (236), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 42/94 (44%), Positives = 65/94 (69%), Gaps = 1/94 (1%)
Query: 92 KLSSVFCGTQDKCTACKKTVYPLEKMTMEGECYHRTCFKCAHGGCLLTNASYASHNGILY 151
K+SS F GT++KC C KTVYP+E++T+ YH++CFKC HGGC ++ ++Y +H G LY
Sbjct: 4 KVSSAFAGTREKCVGCNKTVYPIERVTVNNTMYHKSCFKCCHGGCTISPSNYIAHEGKLY 63
Query: 152 CQNHFWQLFKKSGSYDNLLKPASAAAEN-TVESE 184
C++H QL K+ G++ L A+++ +VE E
Sbjct: 64 CKHHHIQLIKEKGNFSQLENDHEKASQSGSVEDE 97
Score = 72.0 bits (175), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 34/72 (47%), Positives = 49/72 (68%)
Query: 3 FSGTQDKCNACDKTVHFIDLLTADSIPYHKSCFRCSHCKGTLSMCSYSSMDGVLYCKTHF 62
F+GT++KC C+KTV+ I+ +T ++ YHKSCF+C H T+S +Y + +G LYCK H
Sbjct: 9 FAGTREKCVGCNKTVYPIERVTVNNTMYHKSCFKCCHGGCTISPSNYIAHEGKLYCKHHH 68
Query: 63 EQLFKETGTFKK 74
QL KE G F +
Sbjct: 69 IQLIKEKGNFSQ 80
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.320 0.130 0.418
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 6,343,735
Number of extensions: 245754
Number of successful extensions: 613
Number of sequences better than 1.0e-10: 6
Number of HSP's gapped: 596
Number of HSP's successfully gapped: 12
Length of query: 224
Length of database: 17,035,801
Length adjustment: 97
Effective length of query: 127
Effective length of database: 11,971,043
Effective search space: 1520322461
Effective search space used: 1520322461
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 154 (63.9 bits)