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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os12g0510900

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to LIM domain protein WLIM-1.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 4.84 (0.101) R2 : 0.379
β1 : -5.72 (0.663) R2dD : 0.706 R2D : -0.128
β2 : 0.743 (0.175) R2dC : 0.0257 R2C : 0.0014
β3 : 3.93 (0.386) R2dE : 0.516 R2E : -0.0495
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -14.4 (3.1) R2dD*E : 0.251 R2D*E : -0.597
γ1 : 0.0641 (0.18) R2dN8 : 0.000349 R2N8 : -0.0107
σ : 1.31
deviance : 789.29
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_____
C
peak time of C : 8.76
E
wheather : temperature
threshold : 26.48
memory length : 1127
response mode : > th
dose dependency : dose dependent
G
type of G : sin
peak or start time of G : 8.47
open length of G : --

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = sin)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
794.05 1.32 4.92 -6.13 0.872 3.89 -0.904 -14.7 -0.231 8.99 26.26 1154 11.4 --
832.07 1.34 4.58 -2.93 0.751 2.96 -0.472 -- 0.345 10.1 25.4 952 7.23 --
789.29 1.31 4.84 -5.72 0.743 3.93 -- -14.4 0.0641 8.76 26.48 1127 8.47 --
830.74 1.34 4.52 -2.88 0.817 2.68 -- -- 0.465 9.43 25.9 972 7.48 --
817.35 1.33 4.85 -5.66 -- 3.91 -- -14.1 0.0895 -- 26.38 1162 7.99 --
1046.01 1.52 4.52 -2.28 0.907 -- 1.68 -- 0.454 5.37 -- -- -- --
1051.41 1.52 4.52 -2.27 0.937 -- -- -- 0.448 6.03 -- -- -- --
862.36 1.37 4.52 -2.84 -- 2.47 -- -- 0.532 -- 26.2 1100 7.59 --
1038.6 1.5 4.44 -- 0.834 2.1 -- -- 0.82 8.6 26.26 969 7.18 --
1096.91 1.55 4.53 -2.25 -- -- -- -- 0.47 -- -- -- -- --
1187.6 1.61 4.46 -- 0.904 -- -- -- 0.701 6.16 -- -- -- --
1070.56 1.52 4.45 -- -- 2.03 -- -- 0.839 -- 26.3 1061 7.08 --
1229.98 1.64 4.48 -- -- -- -- -- 0.719 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 798.47 radiation 30 14400 < th dose independent rect. 16 2
2 799.27 radiation 30 14400 < th dose independent rect. 16 4
5 800.57 radiation 30 14400 < th dose independent rect. 16 12
10 802.47 radiation 30 14400 < th dose independent rect. 16 9
15 806.91 wind 5 43200 > th dose dependent rect. 12 20
24 809.05 wind 5 43200 > th dose independent rect. 12 19
33 810.15 wind 5 43200 < th dose independent rect. 11 20
103 814.09 wind 5 43200 > th dose dependent rect. 24 20
105 814.16 wind 5 43200 > th dose dependent rect. 2 18
110 814.28 wind 5 43200 > th dose dependent sin 16 NA
135 814.97 wind 5 43200 < th dose independent rect. 23 21
137 815.04 wind 5 43200 > th dose independent rect. 23 21
142 815.09 wind 5 43200 > th dose independent sin 15 NA
245 816.78 wind 5 43200 < th dose independent sin 15 NA
255 816.87 wind 5 43200 > th dose dependent rect. 6 14
336 817.60 wind 5 43200 > th dose dependent no NA NA
389 817.98 temperature 25 720 > th dose dependent rect. 18 5
409 818.14 wind 5 43200 < th dose independent no NA NA
457 818.63 wind 7 43200 < th dose independent rect. 18 23
473 818.78 wind 5 43200 > th dose independent no NA NA
483 818.88 wind 5 43200 > th dose independent sin 23 NA
494 818.97 wind 5 43200 > th dose dependent rect. 18 23
556 819.67 wind 5 43200 < th dose independent sin 23 NA
580 819.97 wind 7 43200 > th dose independent rect. 18 23
677 821.20 humidity 80 43200 < th dose independent rect. 21 2
855 822.85 wind 5 43200 > th dose dependent rect. 15 1
865 823.00 wind 3 43200 > th dose dependent rect. 9 7
915 823.50 humidity 80 43200 > th dose independent rect. 22 1
988 824.29 wind 5 43200 > th dose independent rect. 9 7