BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os12g0510900 Os12g0510900|AK058220
(101 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G10200.1 | chr1:3346677-3347763 REVERSE LENGTH=191 153 2e-38
AT2G39900.1 | chr2:16659136-16660267 FORWARD LENGTH=201 111 7e-26
AT3G55770.7 | chr3:20703799-20705115 FORWARD LENGTH=234 97 2e-21
AT1G01780.1 | chr1:282919-284082 FORWARD LENGTH=206 96 3e-21
AT3G61230.1 | chr3:22664601-22665503 REVERSE LENGTH=214 94 2e-20
AT2G45800.1 | chr2:18858153-18859007 REVERSE LENGTH=227 92 8e-20
>AT1G10200.1 | chr1:3346677-3347763 REVERSE LENGTH=191
Length = 190
Score = 153 bits (386), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 72/93 (77%), Positives = 79/93 (84%)
Query: 2 AIKVSSAFAGTREKCVGCNKTVYPIERVTVNNTMYHKSCFKCCHGGCTISPSNYIAHEGK 61
KVS+ F GTREKCVGC+KTVYPIE+V+VN T+YHKSCFKC HGGCTISPSNYIAHEGK
Sbjct: 96 GTKVSNMFGGTREKCVGCDKTVYPIEKVSVNGTLYHKSCFKCTHGGCTISPSNYIAHEGK 155
Query: 62 LYCKHHHIQLIKEKGNFSQLENDHEKASQSGSV 94
LYCKHHHIQLIKEKGN SQLE E A++ V
Sbjct: 156 LYCKHHHIQLIKEKGNLSQLEGGGENAAKDKVV 188
Score = 74.3 bits (181), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 34/73 (46%), Positives = 50/73 (68%)
Query: 8 AFAGTREKCVGCNKTVYPIERVTVNNTMYHKSCFKCCHGGCTISPSNYIAHEGKLYCKHH 67
AFAGT +KC+ C+KTVY ++++T +N +YHK+CF+C H T+ SNY + EG LYC+ H
Sbjct: 2 AFAGTTQKCMACDKTVYLVDKLTADNRVYHKACFRCHHCKGTLKLSNYNSFEGVLYCRPH 61
Query: 68 HIQLIKEKGNFSQ 80
Q K G+ +
Sbjct: 62 FDQNFKRTGSLEK 74
>AT2G39900.1 | chr2:16659136-16660267 FORWARD LENGTH=201
Length = 200
Score = 111 bits (278), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 50/78 (64%), Positives = 61/78 (78%)
Query: 4 KVSSAFAGTREKCVGCNKTVYPIERVTVNNTMYHKSCFKCCHGGCTISPSNYIAHEGKLY 63
+++ F+GT++KC C KTVYPIE+VTV + YHKSCFKC HGGC ISPSNY A EG LY
Sbjct: 97 RLAGMFSGTQDKCATCTKTVYPIEKVTVESQCYHKSCFKCSHGGCPISPSNYAALEGILY 156
Query: 64 CKHHHIQLIKEKGNFSQL 81
CKHH QL KEKG+++ L
Sbjct: 157 CKHHFAQLFKEKGSYNHL 174
Score = 78.6 bits (192), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 35/73 (47%), Positives = 49/73 (67%)
Query: 8 AFAGTREKCVGCNKTVYPIERVTVNNTMYHKSCFKCCHGGCTISPSNYIAHEGKLYCKHH 67
+F GT++KC C KTVYP+E ++ + YHK+CFKC H + SNY + EG +YC+ H
Sbjct: 2 SFTGTQQKCRACEKTVYPVELLSADGISYHKACFKCSHCKSRLQLSNYSSMEGVVYCRPH 61
Query: 68 HIQLIKEKGNFSQ 80
QL KE G+FS+
Sbjct: 62 FEQLFKESGSFSK 74
>AT3G55770.7 | chr3:20703799-20705115 FORWARD LENGTH=234
Length = 233
Score = 96.7 bits (239), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 52/112 (46%), Positives = 62/112 (55%), Gaps = 34/112 (30%)
Query: 4 KVSSAFAGTREKCVGCNKTVYPIER----------------------------------V 29
+V+ F+GT+EKC C+KTVYPIE+ V
Sbjct: 96 RVAGRFSGTQEKCATCSKTVYPIEKIHNPLSYRELARKPNVLHRCIDPGDIGSCYFNLHV 155
Query: 30 TVNNTMYHKSCFKCCHGGCTISPSNYIAHEGKLYCKHHHIQLIKEKGNFSQL 81
TV + YHKSCFKC HGGC ISPSNY A EG LYCKHH QL KEKG+++ L
Sbjct: 156 TVESQTYHKSCFKCSHGGCPISPSNYAALEGILYCKHHFAQLFKEKGSYNHL 207
Score = 74.7 bits (182), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 37/88 (42%), Positives = 53/88 (60%)
Query: 8 AFAGTREKCVGCNKTVYPIERVTVNNTMYHKSCFKCCHGGCTISPSNYIAHEGKLYCKHH 67
+F GT++KC C KTVY +E ++ + YHKSCFKC H + S+Y + EG LYCK H
Sbjct: 2 SFTGTQQKCKACEKTVYAVELLSADGVGYHKSCFKCTHCKSRLQLSSYSSMEGVLYCKPH 61
Query: 68 HIQLIKEKGNFSQLENDHEKASQSGSVE 95
QL KE G+F++ K++ + E
Sbjct: 62 FEQLFKESGSFNKNFQSPAKSADKSTPE 89
>AT1G01780.1 | chr1:282919-284082 FORWARD LENGTH=206
Length = 205
Score = 95.9 bits (237), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 41/99 (41%), Positives = 66/99 (66%), Gaps = 2/99 (2%)
Query: 4 KVSSAFAGTREKCVGCNKTVYPIERVTVNNTMYHKSCFKCCHGGCTISPSNYIAHEGKLY 63
K+SS F GT++KC C KTVYP+E++ + +HK+CF+C HGGCT++ S+Y + + LY
Sbjct: 92 KISSIFCGTQDKCAACEKTVYPLEKIQMEGECFHKTCFRCAHGGCTLTHSSYASLDSVLY 151
Query: 64 CKHHHIQLIKEKGNFSQL--ENDHEKASQSGSVEDEDSE 100
C+HH QL EKGN++ + +H + + ++ E +E
Sbjct: 152 CRHHFNQLFMEKGNYAHVLQAANHRRTASGNTLPPEPTE 190
Score = 77.0 bits (188), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 36/73 (49%), Positives = 49/73 (67%)
Query: 8 AFAGTREKCVGCNKTVYPIERVTVNNTMYHKSCFKCCHGGCTISPSNYIAHEGKLYCKHH 67
+F GT +KC C+KTVY ++ +++ YHKSCF+C H T+ SNY + +G LYCK H
Sbjct: 2 SFTGTLDKCNVCDKTVYVVDMLSIEGMPYHKSCFRCTHCKGTLQMSNYSSMDGVLYCKTH 61
Query: 68 HIQLIKEKGNFSQ 80
QL KE GNFS+
Sbjct: 62 FEQLFKESGNFSK 74
>AT3G61230.1 | chr3:22664601-22665503 REVERSE LENGTH=214
Length = 213
Score = 93.6 bits (231), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 42/94 (44%), Positives = 63/94 (67%)
Query: 4 KVSSAFAGTREKCVGCNKTVYPIERVTVNNTMYHKSCFKCCHGGCTISPSNYIAHEGKLY 63
++SS F+GT++KC C KTVYP+E++T+ YHK+CF+C H GC ++ S+Y A +G LY
Sbjct: 95 RLSSFFSGTQDKCAACKKTVYPLEKMTMEGESYHKTCFRCAHSGCPLTHSSYAALDGVLY 154
Query: 64 CKHHHIQLIKEKGNFSQLENDHEKASQSGSVEDE 97
CK H QL EKGN++ + +S + ED+
Sbjct: 155 CKVHFSQLFLEKGNYNHVLQAAANHRRSTAEEDK 188
Score = 79.0 bits (193), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 37/74 (50%), Positives = 49/74 (66%)
Query: 7 SAFAGTREKCVGCNKTVYPIERVTVNNTMYHKSCFKCCHGGCTISPSNYIAHEGKLYCKH 66
+AF GT +KC C+KTVY ++ +T+ YHKSCF+C H T+ NY + +G LYCK
Sbjct: 2 AAFTGTTDKCKACDKTVYVMDLMTLEGMPYHKSCFRCSHCNGTLVICNYSSMDGVLYCKT 61
Query: 67 HHIQLIKEKGNFSQ 80
H QL KE GNFS+
Sbjct: 62 HFEQLFKESGNFSK 75
>AT2G45800.1 | chr2:18858153-18859007 REVERSE LENGTH=227
Length = 226
Score = 91.7 bits (226), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 43/92 (46%), Positives = 63/92 (68%), Gaps = 3/92 (3%)
Query: 4 KVSSAFAGTREKCVGCNKTVYPIERVTVNNTMYHKSCFKCCHGGCTISPSNYIAHEGKLY 63
K+SS F+GT++KC C KTVYP+E+VT+ YHK+CF+C H GC ++ S+Y + G LY
Sbjct: 94 KLSSFFSGTQDKCATCKKTVYPLEKVTMEGESYHKTCFRCTHSGCPLTHSSYASLNGVLY 153
Query: 64 CKHHHIQLIKEKGNFS---QLENDHEKASQSG 92
CK H QL EKG+++ Q +H +++ SG
Sbjct: 154 CKVHFNQLFLEKGSYNHVHQAAANHRRSASSG 185
Score = 77.4 bits (189), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 36/73 (49%), Positives = 49/73 (67%)
Query: 8 AFAGTREKCVGCNKTVYPIERVTVNNTMYHKSCFKCCHGGCTISPSNYIAHEGKLYCKHH 67
+F GT +KC C+KTVY ++ +T+ YHKSCF+C H T+ SNY + +G LYCK H
Sbjct: 2 SFTGTLDKCKACDKTVYVMDLLTLEGNTYHKSCFRCTHCKGTLVISNYSSMDGVLYCKPH 61
Query: 68 HIQLIKEKGNFSQ 80
QL KE GN+S+
Sbjct: 62 FEQLFKESGNYSK 74
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.315 0.130 0.403
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 2,459,375
Number of extensions: 99510
Number of successful extensions: 338
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 338
Number of HSP's successfully gapped: 12
Length of query: 101
Length of database: 11,106,569
Length adjustment: 71
Effective length of query: 30
Effective length of database: 9,160,033
Effective search space: 274800990
Effective search space used: 274800990
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 104 (44.7 bits)