Os03g0266100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : LIM, zinc-binding domain containing protein.
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Os03g0266100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : LIM, zinc-binding domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 36.33 | 0.283 | 11.7 | -1.01 | 0.336 | 0.592 | 0.526 | 7.61e-05 | -0.0844 | 22.6 | 22.36 | 10 | -- | -- |
| 36.33 | 0.281 | 11.7 | -1.01 | 0.336 | 0.592 | 0.526 | -- | -0.0845 | 22.6 | 22.36 | 9 | -- | -- |
| 36.62 | 0.282 | 11.7 | -1.02 | 0.337 | 0.589 | -- | 0.408 | -0.0851 | 22.6 | 22.33 | 9 | -- | -- |
| 37.47 | 0.285 | 11.7 | -1.03 | 0.319 | 0.61 | -- | -- | -0.0858 | 22.5 | 22.35 | 9 | -- | -- |
| 38.65 | 0.29 | 11.7 | -1.02 | -- | 0.831 | -- | 0.374 | -0.0836 | -- | 21.91 | 9 | -- | -- |
| 42.7 | 0.306 | 11.7 | -1.03 | 0.911 | -- | 0.592 | -- | -0.0913 | 23.5 | -- | -- | -- | -- |
| 44.22 | 0.311 | 11.7 | -1.06 | 0.908 | -- | -- | -- | -0.0937 | 23.5 | -- | -- | -- | -- |
| 39.38 | 0.292 | 11.7 | -1.03 | -- | 0.835 | -- | -- | -0.0845 | -- | 21.94 | 9 | -- | -- |
| 65.56 | 0.377 | 11.7 | -- | 0.253 | 0.671 | -- | -- | 0.0251 | 22 | 22.44 | 10 | -- | -- |
| 95.94 | 0.458 | 11.7 | -1.03 | -- | -- | -- | -- | -0.0839 | -- | -- | -- | -- | -- |
| 73.56 | 0.401 | 11.7 | -- | 0.896 | -- | -- | -- | 0.0238 | 23.4 | -- | -- | -- | -- |
| 67.19 | 0.382 | 11.7 | -- | -- | 0.839 | -- | -- | 0.0328 | -- | 22.03 | 10 | -- | -- |
| 123.97 | 0.52 | 11.7 | -- | -- | -- | -- | -- | 0.0304 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 28.63 | temperature | 15.0 | 270 | > th | dose dependent | rect. | 5 | 6 |
| 2 | 28.68 | temperature | 15.0 | 90 | > th | dose dependent | rect. | 5 | 8 |
| 11 | 29.58 | temperature | 15.0 | 10 | > th | dose dependent | rect. | 6 | 8 |
| 26 | 30.43 | temperature | 20.0 | 270 | > th | dose independent | rect. | 5 | 6 |
| 46 | 31.15 | radiation | 30.0 | 90 | < th | dose dependent | rect. | 1 | 16 |
| 48 | 31.19 | wind | 5.0 | 270 | < th | dose independent | rect. | 5 | 6 |
| 60 | 31.31 | wind | 9.0 | 270 | < th | dose dependent | rect. | 5 | 7 |
| 78 | 31.57 | radiation | 20.0 | 10 | < th | dose dependent | sin | 4 | NA |
| 93 | 31.81 | temperature | 30.0 | 10 | < th | dose dependent | rect. | 2 | 16 |
| 99 | 31.86 | radiation | 20.0 | 10 | < th | dose dependent | rect. | 24 | 17 |
| 109 | 31.96 | radiation | 10.0 | 270 | < th | dose dependent | rect. | 23 | 15 |
| 111 | 32.01 | humidity | 50.0 | 270 | > th | dose independent | rect. | 24 | 16 |
| 124 | 32.14 | radiation | 20.0 | 10 | < th | dose dependent | rect. | 2 | 15 |
| 128 | 32.16 | temperature | 25.0 | 90 | < th | dose independent | rect. | 1 | 17 |
| 131 | 32.19 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 24 | 16 |
| 156 | 32.36 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 11 | 18 |
| 173 | 32.44 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 16 | 8 |
| 174 | 32.44 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 16 | 8 |
| 178 | 32.46 | wind | 9.0 | 270 | < th | dose independent | rect. | 16 | 8 |
| 179 | 32.46 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 24 | 16 |
| 182 | 32.47 | temperature | 10.0 | 270 | > th | dose independent | rect. | 16 | 8 |
| 183 | 32.47 | radiation | 40.0 | 270 | < th | dose independent | rect. | 16 | 8 |
| 184 | 32.47 | temperature | 10.0 | 270 | > th | dose independent | rect. | 24 | 16 |
| 203 | 32.53 | radiation | 10.0 | 270 | < th | dose dependent | sin | 9 | NA |
| 207 | 32.54 | radiation | 20.0 | 90 | < th | dose independent | rect. | 1 | 16 |
| 215 | 32.57 | humidity | 50.0 | 10 | > th | dose dependent | rect. | 24 | 18 |
| 235 | 32.64 | radiation | 1.0 | 270 | > th | dose independent | rect. | 18 | 17 |
| 237 | 32.65 | radiation | 20.0 | 10 | < th | dose independent | rect. | 24 | 18 |
| 296 | 32.86 | radiation | 10.0 | 270 | > th | dose independent | rect. | 6 | 5 |
| 307 | 32.86 | wind | 9.0 | 270 | < th | dose independent | rect. | 24 | 16 |
| 345 | 32.94 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 24 | 16 |
| 347 | 32.94 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 24 | 16 |
| 359 | 32.98 | temperature | 25.0 | 10 | > th | dose dependent | sin | 7 | NA |
| 367 | 33.01 | radiation | 40.0 | 90 | < th | dose independent | rect. | 1 | 16 |
| 396 | 33.08 | temperature | 15.0 | 270 | > th | dose independent | rect. | 11 | 18 |
| 398 | 33.09 | wind | 1.0 | 270 | > th | dose independent | rect. | 16 | 8 |
| 401 | 33.09 | humidity | 50.0 | 90 | > th | dose dependent | rect. | 1 | 16 |
| 404 | 33.10 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 5 | 6 |
| 407 | 33.10 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 5 | 6 |
| 452 | 33.19 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 5 | 6 |
| 453 | 33.19 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 5 | 6 |
| 526 | 33.35 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 11 | 18 |
| 529 | 33.36 | radiation | 40.0 | 270 | < th | dose dependent | rect. | 16 | 8 |
| 533 | 33.37 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 16 | 8 |
| 534 | 33.37 | wind | 7.0 | 270 | < th | dose independent | rect. | 17 | 18 |
| 537 | 33.38 | radiation | 10.0 | 270 | > th | dose independent | sin | 9 | NA |
| 565 | 33.44 | wind | 9.0 | 270 | < th | dose dependent | rect. | 5 | 18 |
| 567 | 33.45 | humidity | 50.0 | 270 | > th | dose independent | rect. | 5 | 6 |
| 589 | 33.48 | wind | 9.0 | 270 | < th | dose independent | rect. | 11 | 18 |
| 599 | 33.51 | radiation | 10.0 | 14400 | < th | dose dependent | rect. | 19 | 8 |
| 614 | 33.55 | humidity | 50.0 | 270 | > th | dose independent | rect. | 11 | 7 |
| 634 | 33.57 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 17 | 18 |
| 636 | 33.57 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 17 | 18 |
| 667 | 33.63 | humidity | 50.0 | 270 | > th | dose independent | rect. | 12 | 17 |
| 676 | 33.64 | temperature | 10.0 | 90 | > th | dose dependent | rect. | 6 | 18 |
| 678 | 33.65 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 22 | 8 |
| 703 | 33.68 | radiation | 1.0 | 270 | < th | dose independent | sin | 7 | NA |
| 713 | 33.69 | radiation | 1.0 | 270 | > th | dose independent | sin | 7 | NA |
| 722 | 33.69 | temperature | 10.0 | 10 | > th | dose dependent | rect. | 8 | 16 |
| 730 | 33.70 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 23 | 6 |
| 759 | 33.72 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 22 | 8 |
| 761 | 33.73 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 11 | 6 |
| 776 | 33.74 | temperature | 10.0 | 10 | > th | dose dependent | rect. | 6 | 18 |
| 809 | 33.79 | wind | 5.0 | 270 | < th | dose independent | rect. | 5 | 19 |
| 810 | 33.79 | radiation | 1.0 | 90 | > th | dose dependent | sin | 7 | NA |
| 912 | 33.92 | radiation | 40.0 | 270 | < th | dose independent | rect. | 11 | 18 |
| 919 | 33.93 | temperature | 10.0 | 270 | > th | dose independent | rect. | 11 | 6 |
| 920 | 33.93 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 11 | 6 |
| 923 | 33.93 | temperature | 10.0 | 270 | > th | dose independent | rect. | 17 | 18 |
| 970 | 33.99 | wind | 1.0 | 270 | > th | dose independent | rect. | 11 | 6 |