BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os03g0266100 Os03g0266100|AK058507
(196 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os03g0266100 LIM, zinc-binding domain containing protein 372 e-103
Os02g0641000 Similar to Transcription factor L2 242 1e-64
Os04g0532500 Similar to Transcription factor L2 228 2e-60
Os10g0503100 Similar to Transcription factor L2 212 1e-55
Os06g0237300 Similar to LIM domain protein WLIM-1 207 6e-54
Os12g0510900 Similar to LIM domain protein WLIM-1 110 7e-25
>Os03g0266100 LIM, zinc-binding domain containing protein
Length = 196
Score = 372 bits (954), Expect = e-103, Method: Compositional matrix adjust.
Identities = 184/196 (93%), Positives = 184/196 (93%)
Query: 1 MFSGTQQKCKVCTKTVYPMDQLSTDGVVFHRSCFKCQHCKSTLSLGNYSSIEGVPYCKPH 60
MFSGTQQKCKVCTKTVYPMDQLSTDGVVFHRSCFKCQHCKSTLSLGNYSSIEGVPYCKPH
Sbjct: 1 MFSGTQQKCKVCTKTVYPMDQLSTDGVVFHRSCFKCQHCKSTLSLGNYSSIEGVPYCKPH 60
Query: 61 FEQLFKETGSYNKSFQSPAKPASEKLTPELTRSPSKAARMFSGTQEKCATCSKTAYPLEK 120
FEQLFKETGSYNKSFQSPAKPASEKLTPELTRSPSKAARMFSGTQEKCATCSKTAYPLEK
Sbjct: 61 FEQLFKETGSYNKSFQSPAKPASEKLTPELTRSPSKAARMFSGTQEKCATCSKTAYPLEK 120
Query: 121 VTVEGQAYHKSCFKCSHGGCAISPSNYAALEGILYCKHHFSQLFKEKGSYNHLIKCASVK 180
VTVEGQAYHKSCFKCSHGGCAISPSNYAALEGILYCKHHFSQLFKEKGSYNHLIKCASVK
Sbjct: 121 VTVEGQAYHKSCFKCSHGGCAISPSNYAALEGILYCKHHFSQLFKEKGSYNHLIKCASVK 180
Query: 181 RXXXXXXXXXXXXDSS 196
R DSS
Sbjct: 181 RAEAQPAPPPAAADSS 196
>Os02g0641000 Similar to Transcription factor L2
Length = 206
Score = 242 bits (618), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 118/180 (65%), Positives = 144/180 (80%), Gaps = 3/180 (1%)
Query: 2 FSGTQQKCKVCTKTVYPMDQLSTDGVVFHRSCFKCQHCKSTLSLGNYSSIEGVPYCKPHF 61
F+GTQ KCK C KTV+ +D L+ DGV +H++CFKC HCK TLS+ NYSS++GV YCK HF
Sbjct: 3 FTGTQDKCKACDKTVHFIDLLTADGVSYHKTCFKCSHCKGTLSMCNYSSMDGVLYCKTHF 62
Query: 62 EQLFKETGSYNKSFQSPAKPASEKLTPELTRSPSKAARMFSGTQEKCATCSKTAYPLEKV 121
EQLFKETGS++K F K +SEK + R+PSK + FSGTQ+KCA C KT YPLEK+
Sbjct: 63 EQLFKETGSFSKKFSQGGK-SSEK--SDQGRAPSKLSSAFSGTQDKCAACQKTVYPLEKL 119
Query: 122 TVEGQAYHKSCFKCSHGGCAISPSNYAALEGILYCKHHFSQLFKEKGSYNHLIKCASVKR 181
T+EG++YHKSCFKCSHGGC ++ S+YAAL GILYCK HFSQLFKEKGSYNHLI+ A K+
Sbjct: 120 TLEGESYHKSCFKCSHGGCILTTSSYAALNGILYCKIHFSQLFKEKGSYNHLIQTAQSKQ 179
Score = 91.7 bits (226), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 43/89 (48%), Positives = 59/89 (66%), Gaps = 2/89 (2%)
Query: 2 FSGTQQKCKVCTKTVYPMDQLSTDGVVFHRSCFKCQHCKSTLSLGNYSSIEGVPYCKPHF 61
FSGTQ KC C KTVYP+++L+ +G +H+SCFKC H L+ +Y+++ G+ YCK HF
Sbjct: 99 FSGTQDKCAACQKTVYPLEKLTLEGESYHKSCFKCSHGGCILTTSSYAALNGILYCKIHF 158
Query: 62 EQLFKETGSYNKSFQSPA--KPASEKLTP 88
QLFKE GSYN Q+ + SE+ P
Sbjct: 159 SQLFKEKGSYNHLIQTAQSKQKESEEAAP 187
>Os04g0532500 Similar to Transcription factor L2
Length = 201
Score = 228 bits (581), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 108/174 (62%), Positives = 132/174 (75%), Gaps = 4/174 (2%)
Query: 2 FSGTQQKCKVCTKTVYPMDQLSTDGVVFHRSCFKCQHCKSTLSLGNYSSIEGVPYCKPHF 61
F+GTQ KC C KTV+ +D L+ DGV +H++CFKC HCK LS+ +YSS++GV YCK HF
Sbjct: 3 FTGTQDKCTACDKTVHFIDLLTADGVPYHKTCFKCSHCKGILSMCSYSSMDGVLYCKTHF 62
Query: 62 EQLFKETGSYNKSFQSPAKPASEKLTPELTRSPSKAARMFSGTQEKCATCSKTAYPLEKV 121
EQLFKETGS++K F P EL R+PSK FSGTQ+KCA C KT YPLEK+
Sbjct: 63 EQLFKETGSFSKKFA----PGCRSTDKELARAPSKICSAFSGTQDKCAACQKTVYPLEKL 118
Query: 122 TVEGQAYHKSCFKCSHGGCAISPSNYAALEGILYCKHHFSQLFKEKGSYNHLIK 175
T+EG++YHKSCFKCSHGGC ++ S+YAAL G+LYCK HF QLF EKGSYNH+ K
Sbjct: 119 TLEGESYHKSCFKCSHGGCILTTSSYAALNGVLYCKIHFGQLFMEKGSYNHMKK 172
>Os10g0503100 Similar to Transcription factor L2
Length = 224
Score = 212 bits (540), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 98/178 (55%), Positives = 134/178 (75%), Gaps = 5/178 (2%)
Query: 2 FSGTQQKCKVCTKTVYPMDQLSTDGVVFHRSCFKCQHCKSTLSLGNYSSIEGVPYCKPHF 61
FSGTQ KC C KTV+ +D L+ D + +H+SCF+C HCK TLS+ +YSS++GV YCK HF
Sbjct: 3 FSGTQDKCNACDKTVHFIDLLTADSIPYHKSCFRCSHCKGTLSMCSYSSMDGVLYCKTHF 62
Query: 62 EQLFKETGSYNKSFQSPAKPASEKLTPELTRSPSKAARMFSGTQEKCATCSKTAYPLEKV 121
EQLFKETG++ K+F P+ K E + PSK + +F GTQ+KC C KT YPLEK+
Sbjct: 63 EQLFKETGTFKKNF-----PSGTKANSEQAKIPSKLSSVFCGTQDKCTACKKTVYPLEKM 117
Query: 122 TVEGQAYHKSCFKCSHGGCAISPSNYAALEGILYCKHHFSQLFKEKGSYNHLIKCASV 179
T+EG+ YH++CFKC+HGGC ++ ++YA+ GILYC++HF QLFK+ GSY++L+K AS
Sbjct: 118 TMEGECYHRTCFKCAHGGCLLTNASYASHNGILYCQNHFWQLFKKSGSYDNLLKPASA 175
Score = 85.9 bits (211), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 39/85 (45%), Positives = 58/85 (68%), Gaps = 1/85 (1%)
Query: 1 MFSGTQQKCKVCTKTVYPMDQLSTDGVVFHRSCFKCQHCKSTLSLGNYSSIEGVPYCKPH 60
+F GTQ KC C KTVYP+++++ +G +HR+CFKC H L+ +Y+S G+ YC+ H
Sbjct: 96 VFCGTQDKCTACKKTVYPLEKMTMEGECYHRTCFKCAHGGCLLTNASYASHNGILYCQNH 155
Query: 61 FEQLFKETGSYNKSFQSPAKPASEK 85
F QLFK++GSY+ + PA A+E
Sbjct: 156 FWQLFKKSGSYDNLLK-PASAAAEN 179
>Os06g0237300 Similar to LIM domain protein WLIM-1
Length = 1303
Score = 207 bits (526), Expect = 6e-54, Method: Compositional matrix adjust.
Identities = 92/171 (53%), Positives = 123/171 (71%)
Query: 2 FSGTQQKCKVCTKTVYPMDQLSTDGVVFHRSCFKCQHCKSTLSLGNYSSIEGVPYCKPHF 61
+ GT QKC C +TVYP+++L+ DG V+HR CF+C HCK+TL NYSS+EGV YCKPH+
Sbjct: 6 WGGTTQKCDSCGRTVYPVEELAADGRVYHRPCFRCTHCKATLQFSNYSSVEGVLYCKPHY 65
Query: 62 EQLFKETGSYNKSFQSPAKPASEKLTPELTRSPSKAARMFSGTQEKCATCSKTAYPLEKV 121
+Q+ K TGS KSF+ +K A + + P++ + MF GTQ+KC C+KT YPLEKV
Sbjct: 66 DQILKSTGSLEKSFEGTSKSAKAEKSNGNKGQPNRFSSMFVGTQDKCVVCNKTVYPLEKV 125
Query: 122 TVEGQAYHKSCFKCSHGGCAISPSNYAALEGILYCKHHFSQLFKEKGSYNH 172
+ G +YHKSCF+C+HGGC +SPSN EG LYCK H SQLF KG++++
Sbjct: 126 NLNGSSYHKSCFRCTHGGCTLSPSNNVTHEGKLYCKTHHSQLFMVKGNFSN 176
Score = 83.6 bits (205), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 32/74 (43%), Positives = 51/74 (68%)
Query: 97 AARMFSGTQEKCATCSKTAYPLEKVTVEGQAYHKSCFKCSHGGCAISPSNYAALEGILYC 156
AA + GT +KC +C +T YP+E++ +G+ YH+ CF+C+H + SNY+++EG+LYC
Sbjct: 2 AAAAWGGTTQKCDSCGRTVYPVEELAADGRVYHRPCFRCTHCKATLQFSNYSSVEGVLYC 61
Query: 157 KHHFSQLFKEKGSY 170
K H+ Q+ K GS
Sbjct: 62 KPHYDQILKSTGSL 75
Score = 74.7 bits (182), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 35/71 (49%), Positives = 47/71 (66%)
Query: 1 MFSGTQQKCKVCTKTVYPMDQLSTDGVVFHRSCFKCQHCKSTLSLGNYSSIEGVPYCKPH 60
MF GTQ KC VC KTVYP+++++ +G +H+SCF+C H TLS N + EG YCK H
Sbjct: 104 MFVGTQDKCVVCNKTVYPLEKVNLNGSSYHKSCFRCTHGGCTLSPSNNVTHEGKLYCKTH 163
Query: 61 FEQLFKETGSY 71
QLF G++
Sbjct: 164 HSQLFMVKGNF 174
>Os12g0510900 Similar to LIM domain protein WLIM-1
Length = 101
Score = 110 bits (275), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 50/78 (64%), Positives = 59/78 (75%)
Query: 96 KAARMFSGTQEKCATCSKTAYPLEKVTVEGQAYHKSCFKCSHGGCAISPSNYAALEGILY 155
K + F+GT+EKC C+KT YP+E+VTV YHKSCFKC HGGC ISPSNY A EG LY
Sbjct: 4 KVSSAFAGTREKCVGCNKTVYPIERVTVNNTMYHKSCFKCCHGGCTISPSNYIAHEGKLY 63
Query: 156 CKHHFSQLFKEKGSYNHL 173
CKHH QL KEKG+++ L
Sbjct: 64 CKHHHIQLIKEKGNFSQL 81
Score = 74.3 bits (181), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 36/88 (40%), Positives = 59/88 (67%), Gaps = 1/88 (1%)
Query: 2 FSGTQQKCKVCTKTVYPMDQLSTDGVVFHRSCFKCQHCKSTLSLGNYSSIEGVPYCKPHF 61
F+GT++KC C KTVYP+++++ + ++H+SCFKC H T+S NY + EG YCK H
Sbjct: 9 FAGTREKCVGCNKTVYPIERVTVNNTMYHKSCFKCCHGGCTISPSNYIAHEGKLYCKHHH 68
Query: 62 EQLFKETGSYNKSFQSPAKPASEKLTPE 89
QL KE G++++ ++ + AS+ + E
Sbjct: 69 IQLIKEKGNFSQ-LENDHEKASQSGSVE 95
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.318 0.129 0.403
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 6,471,254
Number of extensions: 253995
Number of successful extensions: 662
Number of sequences better than 1.0e-10: 6
Number of HSP's gapped: 649
Number of HSP's successfully gapped: 11
Length of query: 196
Length of database: 17,035,801
Length adjustment: 96
Effective length of query: 100
Effective length of database: 12,023,257
Effective search space: 1202325700
Effective search space used: 1202325700
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 153 (63.5 bits)