Os06g0237300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to LIM domain protein WLIM-1.
FiT-DB / Search/ Help/ Sample detail
|
Os06g0237300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
|
Description : Similar to LIM domain protein WLIM-1.
|
|
log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
|
_____ |
|
__
Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 100.92 | 0.472 | 9.81 | 0.597 | 0.759 | -0.278 | -0.205 | -2.11 | 0.268 | 0.252 | 24.79 | 661 | -- | -- |
| 110.13 | 0.489 | 9.88 | 0.102 | 0.797 | -0.291 | 0.498 | -- | 0.12 | 23.3 | 22.68 | 1049 | -- | -- |
| 101.09 | 0.468 | 9.81 | 0.596 | 0.763 | -0.277 | -- | -2.06 | 0.266 | 0.216 | 24.71 | 654 | -- | -- |
| 108.51 | 0.485 | 9.87 | -0.0132 | 0.792 | -0.45 | -- | -- | 0.12 | 23.4 | 24.8 | 2617 | -- | -- |
| 129.11 | 0.529 | 9.84 | 0.389 | -- | -0.669 | -- | -1.61 | 0.0613 | -- | 24.9 | 857 | -- | -- |
| 115.02 | 0.503 | 9.85 | 0.101 | 0.845 | -- | 0.292 | -- | 0.219 | 23.7 | -- | -- | -- | -- |
| 115.37 | 0.503 | 9.85 | 0.0887 | 0.843 | -- | -- | -- | 0.217 | 23.7 | -- | -- | -- | -- |
| 134.36 | 0.54 | 9.86 | -0.028 | -- | -0.784 | -- | -- | 0.091 | -- | 24.92 | 933 | -- | -- |
| 108.44 | 0.485 | 9.88 | -- | 0.799 | -0.485 | -- | -- | 0.102 | 23.5 | 24.79 | 2644 | -- | -- |
| 160.11 | 0.591 | 9.83 | 0.113 | -- | -- | -- | -- | 0.228 | -- | -- | -- | -- | -- |
| 115.58 | 0.503 | 9.85 | -- | 0.844 | -- | -- | -- | 0.207 | 23.7 | -- | -- | -- | -- |
| 132.97 | 0.537 | 9.9 | -- | -- | -0.799 | -- | -- | -0.0438 | -- | 24.9 | 904 | -- | -- |
| 160.44 | 0.591 | 9.83 | -- | -- | -- | -- | -- | 0.215 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
|
Histogram 
|
Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 95.38 | temperature | 25 | 4320 | > th | dose independent | rect. | 23 | 2 |
| 2 | 95.60 | temperature | 25 | 4320 | < th | dose independent | rect. | 24 | 1 |
| 4 | 96.09 | temperature | 25 | 4320 | < th | dose independent | rect. | 23 | 4 |
| 39 | 99.44 | temperature | 30 | 270 | < th | dose dependent | sin | 10 | NA |
| 51 | 99.76 | temperature | 25 | 270 | < th | dose independent | sin | 9 | NA |
| 55 | 99.83 | temperature | 25 | 270 | > th | dose independent | rect. | 23 | 9 |
| 56 | 99.83 | temperature | 25 | 4320 | > th | dose dependent | rect. | 23 | 2 |
| 71 | 100.10 | temperature | 20 | 720 | > th | dose dependent | rect. | 23 | 2 |
| 72 | 100.17 | temperature | 10 | 270 | > th | dose dependent | rect. | 4 | 22 |
| 78 | 100.28 | temperature | 25 | 720 | < th | dose dependent | rect. | 10 | 18 |
| 84 | 100.36 | temperature | 30 | 270 | < th | dose dependent | rect. | 10 | 22 |
| 117 | 100.68 | temperature | 25 | 720 | < th | dose dependent | sin | 15 | NA |
| 176 | 101.05 | temperature | 25 | 720 | < th | dose independent | rect. | 20 | 19 |
| 190 | 101.13 | temperature | 25 | 720 | < th | dose independent | rect. | 18 | 21 |
| 205 | 101.22 | temperature | 25 | 270 | < th | dose independent | rect. | 21 | 13 |
| 214 | 101.25 | temperature | 10 | 30 | > th | dose dependent | rect. | 23 | 23 |
| 217 | 101.26 | temperature | 20 | 720 | > th | dose dependent | rect. | 22 | 19 |
| 227 | 101.28 | temperature | 25 | 720 | < th | dose independent | rect. | 13 | 21 |
| 238 | 101.31 | temperature | 25 | 720 | < th | dose independent | rect. | 11 | 22 |
| 254 | 101.37 | temperature | 25 | 720 | > th | dose independent | rect. | 22 | 19 |
| 259 | 101.37 | wind | 1 | 720 | > th | dose dependent | rect. | 11 | 2 |
| 271 | 101.40 | temperature | 20 | 270 | > th | dose dependent | rect. | 22 | 11 |
| 276 | 101.41 | temperature | 30 | 270 | < th | dose dependent | rect. | 23 | 23 |
| 314 | 101.52 | temperature | 25 | 720 | < th | dose independent | rect. | 16 | 22 |
| 417 | 101.71 | temperature | 10 | 720 | > th | dose dependent | rect. | 21 | 20 |
| 480 | 101.84 | temperature | 25 | 720 | < th | dose dependent | no | NA | NA |
| 495 | 101.86 | temperature | 20 | 720 | > th | dose independent | rect. | 4 | 20 |
| 506 | 101.87 | temperature | 25 | 720 | < th | dose dependent | rect. | 15 | 23 |
| 522 | 101.90 | humidity | 80 | 720 | < th | dose independent | rect. | 11 | 2 |
| 568 | 101.97 | temperature | 15 | 270 | > th | dose dependent | rect. | 14 | 23 |
| 599 | 102.02 | temperature | 25 | 720 | < th | dose independent | no | NA | NA |
| 642 | 102.08 | temperature | 25 | 720 | < th | dose independent | rect. | 23 | 23 |
| 785 | 102.27 | wind | 9 | 30 | > th | dose dependent | rect. | 17 | 21 |
| 798 | 102.28 | temperature | 20 | 10 | > th | dose dependent | rect. | 6 | 22 |
| 826 | 102.33 | temperature | 20 | 1440 | > th | dose independent | rect. | 3 | 1 |
| 853 | 102.36 | temperature | 25 | 270 | < th | dose dependent | rect. | 21 | 12 |
| 934 | 102.48 | temperature | 20 | 4320 | < th | dose independent | rect. | 13 | 11 |
| 948 | 102.50 | temperature | 20 | 4320 | < th | dose independent | rect. | 15 | 9 |
| 951 | 102.50 | temperature | 10 | 270 | > th | dose dependent | sin | 10 | NA |
| 952 | 102.50 | temperature | 10 | 4320 | > th | dose dependent | rect. | 23 | 3 |
| 970 | 102.52 | temperature | 30 | 4320 | < th | dose dependent | rect. | 23 | 3 |
| 980 | 102.53 | temperature | 10 | 270 | > th | dose dependent | no | NA | NA |
| 991 | 102.54 | temperature | 30 | 4320 | < th | dose dependent | rect. | 1 | 1 |