Os10g0503100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Transcription factor L2.
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Os10g0503100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Transcription factor L2.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = atmosphere,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 238.75 | 0.726 | 6.1 | -0.962 | 1.98 | -0.885 | 0.0852 | -2.29 | -0.587 | 7.3 | 1010 | 9796 | -- | -- |
| 250.83 | 0.738 | 6.17 | -1.69 | 2 | -0.914 | 0.0962 | -- | -0.735 | 7.24 | 1009 | 10689 | -- | -- |
| 238.77 | 0.72 | 6.1 | -0.959 | 1.98 | -0.885 | -- | -2.29 | -0.588 | 7.3 | 1010 | 9795 | -- | -- |
| 250.86 | 0.738 | 6.17 | -1.73 | 2 | -0.912 | -- | -- | -0.734 | 7.25 | 1009 | 10699 | -- | -- |
| 447.39 | 0.985 | 6.13 | -0.842 | -- | -0.95 | -- | -2.56 | -0.538 | -- | 1010 | 9811 | -- | -- |
| 280.43 | 0.785 | 6.13 | -1.42 | 2.03 | -- | 0.238 | -- | -0.528 | 7.19 | -- | -- | -- | -- |
| 280.58 | 0.784 | 6.13 | -1.42 | 2.03 | -- | -- | -- | -0.529 | 7.2 | -- | -- | -- | -- |
| 461.54 | 1 | 6.21 | -1.73 | -- | -1.01 | -- | -- | -0.68 | -- | 1009 | 10139 | -- | -- |
| 317.7 | 0.83 | 6.09 | -- | 2 | -0.73 | -- | -- | -0.341 | 7.17 | 1007 | 11384 | -- | -- |
| 497.63 | 1.04 | 6.17 | -1.38 | -- | -- | -- | -- | -0.494 | -- | -- | -- | -- | -- |
| 333.51 | 0.854 | 6.09 | -- | 2.01 | -- | -- | -- | -0.371 | 7.24 | -- | -- | -- | -- |
| 527.48 | 1.07 | 6.13 | -- | -- | -0.859 | -- | -- | -0.311 | -- | 1007 | 11224 | -- | -- |
| 547.88 | 1.09 | 6.14 | -- | -- | -- | -- | -- | -0.34 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 235.69 | temperature | 20 | 270 | > th | dose independent | rect. | 22 | 3 |
| 2 | 235.77 | temperature | 20 | 270 | > th | dose independent | rect. | 21 | 5 |
| 3 | 236.48 | temperature | 20 | 270 | > th | dose independent | rect. | 20 | 7 |
| 10 | 238.87 | radiation | 1 | 43200 | < th | dose dependent | rect. | 1 | 3 |
| 12 | 239.56 | temperature | 20 | 270 | > th | dose dependent | rect. | 22 | 3 |
| 18 | 241.11 | atmosphere | 1010 | 14400 | < th | dose independent | rect. | 22 | 1 |
| 23 | 242.01 | temperature | 15 | 270 | > th | dose dependent | rect. | 21 | 5 |
| 24 | 242.02 | atmosphere | 1005 | 14400 | > th | dose dependent | rect. | 18 | 1 |
| 28 | 242.19 | radiation | 20 | 14400 | > th | dose independent | rect. | 8 | 1 |
| 29 | 242.28 | atmosphere | 1005 | 14400 | > th | dose dependent | rect. | 18 | 5 |
| 36 | 242.40 | atmosphere | 1005 | 14400 | > th | dose dependent | rect. | 20 | 3 |
| 46 | 242.47 | radiation | 20 | 14400 | < th | dose independent | rect. | 9 | 1 |
| 64 | 242.66 | atmosphere | 1005 | 14400 | > th | dose dependent | rect. | 11 | 1 |
| 69 | 242.68 | atmosphere | 1010 | 14400 | > th | dose independent | rect. | 22 | 1 |
| 73 | 242.69 | atmosphere | 1005 | 14400 | > th | dose dependent | rect. | 11 | 13 |
| 109 | 242.87 | atmosphere | 1005 | 14400 | > th | dose dependent | sin | 18 | NA |
| 130 | 242.95 | atmosphere | 1005 | 14400 | > th | dose dependent | rect. | 13 | 1 |
| 151 | 243.02 | atmosphere | 1005 | 14400 | > th | dose dependent | rect. | 11 | 3 |
| 182 | 243.13 | atmosphere | 1010 | 14400 | < th | dose independent | rect. | 18 | 6 |
| 194 | 243.16 | temperature | 15 | 270 | > th | dose dependent | rect. | 20 | 7 |
| 246 | 243.28 | radiation | 20 | 14400 | > th | dose independent | rect. | 14 | 1 |
| 265 | 243.35 | atmosphere | 1010 | 14400 | < th | dose independent | rect. | 18 | 1 |
| 328 | 243.46 | atmosphere | 1005 | 14400 | > th | dose dependent | rect. | 13 | 23 |
| 329 | 243.47 | atmosphere | 1005 | 14400 | > th | dose dependent | no | NA | NA |
| 333 | 243.47 | atmosphere | 1005 | 14400 | > th | dose dependent | rect. | 15 | 23 |
| 366 | 243.52 | atmosphere | 1005 | 14400 | > th | dose dependent | rect. | 20 | 23 |
| 416 | 243.62 | radiation | 20 | 14400 | > th | dose independent | rect. | 13 | 21 |
| 502 | 243.79 | atmosphere | 1010 | 4320 | > th | dose independent | rect. | 18 | 1 |
| 511 | 243.81 | radiation | 20 | 14400 | < th | dose independent | rect. | 14 | 1 |
| 519 | 243.84 | radiation | 20 | 14400 | > th | dose independent | sin | 9 | NA |
| 563 | 243.98 | atmosphere | 1010 | 14400 | < th | dose independent | rect. | 18 | 13 |
| 583 | 244.04 | atmosphere | 1010 | 14400 | > th | dose independent | rect. | 18 | 6 |
| 595 | 244.08 | atmosphere | 1010 | 14400 | < th | dose independent | rect. | 18 | 17 |
| 603 | 244.10 | atmosphere | 1010 | 14400 | < th | dose independent | rect. | 5 | 1 |
| 604 | 244.10 | atmosphere | 1010 | 14400 | > th | dose independent | rect. | 5 | 2 |
| 623 | 244.15 | atmosphere | 1010 | 14400 | < th | dose independent | rect. | 15 | 9 |
| 624 | 244.15 | atmosphere | 1010 | 14400 | < th | dose independent | rect. | 21 | 10 |
| 634 | 244.17 | atmosphere | 1010 | 14400 | < th | dose independent | rect. | 4 | 3 |
| 638 | 244.17 | atmosphere | 1010 | 14400 | < th | dose independent | rect. | 21 | 15 |
| 664 | 244.22 | atmosphere | 1010 | 14400 | < th | dose independent | sin | 11 | NA |
| 687 | 244.26 | radiation | 20 | 14400 | < th | dose independent | rect. | 8 | 7 |
| 703 | 244.29 | atmosphere | 1010 | 14400 | > th | dose independent | rect. | 14 | 10 |
| 737 | 244.37 | atmosphere | 1010 | 14400 | < th | dose independent | rect. | 15 | 16 |
| 801 | 244.48 | radiation | 1 | 43200 | < th | dose dependent | rect. | 22 | 6 |
| 815 | 244.52 | atmosphere | 1010 | 14400 | < th | dose independent | rect. | 3 | 9 |
| 830 | 244.55 | atmosphere | 1010 | 14400 | > th | dose independent | rect. | 18 | 18 |
| 835 | 244.56 | atmosphere | 1010 | 14400 | > th | dose independent | rect. | 18 | 15 |
| 852 | 244.58 | atmosphere | 1010 | 14400 | > th | dose independent | rect. | 14 | 18 |
| 881 | 244.61 | atmosphere | 1010 | 14400 | > th | dose independent | rect. | 14 | 22 |
| 886 | 244.62 | atmosphere | 1010 | 14400 | > th | dose independent | rect. | 3 | 9 |
| 905 | 244.64 | atmosphere | 1010 | 14400 | > th | dose independent | rect. | 21 | 15 |
| 952 | 244.67 | radiation | 20 | 14400 | > th | dose independent | rect. | 6 | 9 |