BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os10g0465000 Os10g0465000|AK072090
(317 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os10g0465000 WD40-like domain containing protein 624 e-179
Os02g0294600 Similar to WD-repeat protein-like 75 8e-14
Os02g0543400 WD40-like domain containing protein 69 5e-12
Os06g0649500 WD40-like domain containing protein 65 6e-11
>Os10g0465000 WD40-like domain containing protein
Length = 317
Score = 624 bits (1610), Expect = e-179, Method: Compositional matrix adjust.
Identities = 305/317 (96%), Positives = 305/317 (96%)
Query: 1 HIHACLQILCGHNNEVWFVRFSNDGNYLASSSSDCTAIIWKVEEDDTLTKKHCLVGHKNP 60
HIHACLQILCGHNNEVWFVRFSNDGNYLASSSSDCTAIIWKVEEDDTLTKKHCLVGHKNP
Sbjct: 1 HIHACLQILCGHNNEVWFVRFSNDGNYLASSSSDCTAIIWKVEEDDTLTKKHCLVGHKNP 60
Query: 61 ISFVAWSPNDRMLLTCGNGESVKLWNVATGECSLKFSSSVGHIINSCAWFPNSEKIVCAS 120
ISFVAWSPNDRMLLTCGNGESVKLWNVATGECSLKFSSSVGHIINSCAWFPNSEKIVCAS
Sbjct: 61 ISFVAWSPNDRMLLTCGNGESVKLWNVATGECSLKFSSSVGHIINSCAWFPNSEKIVCAS 120
Query: 121 CEPESSPKRIFTCDLEGQELESWVGDRIPKVSDIAVTPDSKHLICVCSNEIWIRELPKGR 180
CEPESSPKRIFTCDLEGQELESWVGDRIPKVSDIAVTPDSKHLICVCSNEIWIRELPKGR
Sbjct: 121 CEPESSPKRIFTCDLEGQELESWVGDRIPKVSDIAVTPDSKHLICVCSNEIWIRELPKGR 180
Query: 181 EWRIREQQTIXXXXXXXXXXXXIVNLNSQEIHLWRISESSTAADNKFKGHKQGKFVIRSC 240
EWRIREQQTI IVNLNSQEIHLWRISESSTAADNKFKGHKQGKFVIRSC
Sbjct: 181 EWRIREQQTISSLSLSGDGQSLIVNLNSQEIHLWRISESSTAADNKFKGHKQGKFVIRSC 240
Query: 241 FGGSNSLFIASGSEDSQVYIWKRHLETPIKVLYGHSLTVNCVSWNPAKPHMLASASDDRT 300
FGGSNSLFIASGSEDSQVYIWKRHLETPIKVLYGHSLTVNCVSWNPAKPHMLASASDDRT
Sbjct: 241 FGGSNSLFIASGSEDSQVYIWKRHLETPIKVLYGHSLTVNCVSWNPAKPHMLASASDDRT 300
Query: 301 VRIWLAHKGSHRTRLTA 317
VRIWLAHKGSHRTRLTA
Sbjct: 301 VRIWLAHKGSHRTRLTA 317
>Os02g0294600 Similar to WD-repeat protein-like
Length = 119
Score = 74.7 bits (182), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 33/48 (68%), Positives = 37/48 (77%)
Query: 257 QVYIWKRHLETPIKVLYGHSLTVNCVSWNPAKPHMLASASDDRTVRIW 304
Q+YIW R I+ L GH+ TVNCVSWNPA PHMLASASDD T+RIW
Sbjct: 33 QIYIWHRATGDLIETLPGHTGTVNCVSWNPANPHMLASASDDHTIRIW 80
>Os02g0543400 WD40-like domain containing protein
Length = 301
Score = 68.9 bits (167), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 71/300 (23%), Positives = 120/300 (40%), Gaps = 16/300 (5%)
Query: 7 QILCGHNNEVWFVRFSNDGNYLASSSSDCTAIIWKVEEDDTLTKKHCLVGHKNPISFVAW 66
++L GH V VRF+ DGNY S D +W L K + H + V
Sbjct: 15 RVLSGHEGAVLAVRFNRDGNYCLSCGKDRIIRLWN-PHTGALVKPY--KSHGREVRDVNS 71
Query: 67 SPNDRMLLTCGNGESVKLWNVATGECSLKFSSSVGHI--INSCAWFPNSEKIVCASCEPE 124
S ++ L++CG V W+VA+ KF GH INS + + +V A +
Sbjct: 72 SSDNAKLVSCGGDRQVFYWDVASARVIRKFR---GHNSEINSVKFNEFNTVVVSAGYD-- 126
Query: 125 SSPKRIFTCDLEGQELESWVGDRIPKVSDIAVTPDSKHLICVCSNEIWIRELPKGREWRI 184
R F C + + + V + +T +++ + I ++ GRE
Sbjct: 127 -RTVRAFDCRSQSSDPIQTIDTFQDSVMSVNLT-NTEIIAGSVDGTIRTFDIRMGRETVD 184
Query: 185 REQQTIXXXXXXXXXXXXIVNLNSQEIHLWRISESSTAADNKFKGHKQGKFVIRSCFGGS 244
+ + N + L + +S+ ++KGH F + C
Sbjct: 185 NLGHPVNCISLSNDRNCLLANCLDSTVRL--LDKSTGELLQEYKGHICKSFKMDCCLTND 242
Query: 245 NSLFIASGSEDSQVYIWKRHLETPIKVLYGHSLTVNCVSWNPAKPHMLASASDDRTVRIW 304
++ F+ GSED ++ W+ + HS V VS++P + ML S+ D T+R+W
Sbjct: 243 DA-FVVGGSEDGYIFFWELVDAPVVSSFRAHSSVVTSVSYHPTRACMLTSSVDG-TIRVW 300
>Os06g0649500 WD40-like domain containing protein
Length = 654
Score = 65.1 bits (157), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 41/120 (34%), Positives = 62/120 (51%), Gaps = 8/120 (6%)
Query: 2 IHACLQILCGHNNEVWFVRFSNDGNYLASSSSDCTAIIWKVEEDDTLTKKHCLVGHKNPI 61
++A L GHN VW V+FS G+Y AS+S D TA IW + D + + GH + +
Sbjct: 437 LNANLVCYKGHNYPVWDVQFSPVGHYFASASHDRTARIWSM---DKIQPLRIMAGHLSDV 493
Query: 62 SFVAWSPNDRMLLTCGNGESVKLWNVATGECSLKFSSSVGH--IINSCAWFPNSEKIVCA 119
V W N + T + ++V+LW+V TGEC F +GH ++ S A P+ +
Sbjct: 494 DCVQWHVNCNYIATGSSDKTVRLWDVQTGECIRMF---IGHRSMVLSLAMSPDGRYMASG 550
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.319 0.132 0.433
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 11,951,753
Number of extensions: 487526
Number of successful extensions: 2156
Number of sequences better than 1.0e-10: 5
Number of HSP's gapped: 2188
Number of HSP's successfully gapped: 5
Length of query: 317
Length of database: 17,035,801
Length adjustment: 101
Effective length of query: 216
Effective length of database: 11,762,187
Effective search space: 2540632392
Effective search space used: 2540632392
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 156 (64.7 bits)