Os02g0543400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : WD40-like domain containing protein.
FiT-DB / Search/ Help/ Sample detail
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Os02g0543400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : WD40-like domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 30.94 | 0.261 | 10.9 | -0.542 | 0.196 | -0.922 | -0.589 | 0.767 | 0.0447 | 22.8 | 24.68 | 28 | -- | -- |
| 31.89 | 0.265 | 10.9 | -0.421 | 0.213 | -0.971 | -0.384 | -- | 0.0704 | 22.5 | 24.68 | 28 | -- | -- |
| 32.22 | 0.266 | 10.9 | -0.462 | 0.21 | -0.94 | -- | 0.392 | 0.0596 | 22.6 | 24.68 | 28 | -- | -- |
| 32.36 | 0.265 | 10.9 | -0.424 | 0.214 | -0.987 | -- | -- | 0.064 | 22.7 | 24.57 | 29 | -- | -- |
| 32.78 | 0.267 | 10.9 | -0.525 | -- | -0.865 | -- | 0.82 | 0.000263 | -- | 25.8 | 283 | -- | -- |
| 46.16 | 0.318 | 10.8 | -0.192 | 0.122 | -- | -0.402 | -- | 0.251 | 19.8 | -- | -- | -- | -- |
| 46.55 | 0.32 | 10.8 | -0.179 | 0.13 | -- | -- | -- | 0.251 | 18.8 | -- | -- | -- | -- |
| 33.79 | 0.271 | 10.9 | -0.413 | -- | -0.921 | -- | -- | 0.0626 | -- | 25.31 | 231 | -- | -- |
| 36.46 | 0.283 | 10.9 | -- | 0.19 | -0.822 | -- | -- | 0.143 | 22.1 | 24.57 | 29 | -- | -- |
| 47.44 | 0.322 | 10.8 | -0.182 | -- | -- | -- | -- | 0.249 | -- | -- | -- | -- | -- |
| 47.4 | 0.322 | 10.8 | -- | 0.132 | -- | -- | -- | 0.271 | 18.7 | -- | -- | -- | -- |
| 37.85 | 0.287 | 10.9 | -- | -- | -0.761 | -- | -- | 0.133 | -- | 25.56 | 219 | -- | -- |
| 48.32 | 0.324 | 10.8 | -- | -- | -- | -- | -- | 0.269 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 30.70 | temperature | 25 | 90 | < th | dose dependent | rect. | 11 | 22 |
| 2 | 30.82 | temperature | 25 | 270 | < th | dose dependent | rect. | 8 | 22 |
| 12 | 30.92 | temperature | 25 | 30 | < th | dose dependent | rect. | 3 | 23 |
| 17 | 30.96 | temperature | 25 | 30 | < th | dose dependent | rect. | 7 | 23 |
| 18 | 30.96 | temperature | 25 | 30 | < th | dose dependent | rect. | 13 | 23 |
| 20 | 30.97 | temperature | 25 | 30 | < th | dose dependent | rect. | 23 | 23 |
| 22 | 30.99 | temperature | 25 | 90 | < th | dose dependent | rect. | 5 | 23 |
| 25 | 30.99 | temperature | 25 | 30 | < th | dose dependent | rect. | 15 | 23 |
| 26 | 31.00 | temperature | 25 | 30 | < th | dose dependent | no | NA | NA |
| 28 | 31.00 | temperature | 25 | 30 | < th | dose dependent | rect. | 17 | 23 |
| 33 | 31.03 | temperature | 25 | 30 | < th | dose dependent | rect. | 19 | 23 |
| 34 | 31.03 | temperature | 25 | 30 | < th | dose dependent | rect. | 21 | 23 |
| 43 | 31.11 | temperature | 25 | 90 | < th | dose dependent | rect. | 1 | 23 |
| 51 | 31.18 | temperature | 25 | 90 | < th | dose dependent | rect. | 11 | 18 |
| 101 | 31.54 | temperature | 25 | 10 | < th | dose dependent | sin | 16 | NA |
| 238 | 32.28 | temperature | 25 | 90 | < th | dose dependent | rect. | 11 | 14 |
| 270 | 32.51 | humidity | 90 | 14400 | > th | dose dependent | rect. | 1 | 9 |
| 275 | 32.55 | humidity | 90 | 14400 | > th | dose dependent | rect. | 18 | 11 |
| 302 | 32.64 | humidity | 90 | 14400 | > th | dose dependent | rect. | 20 | 8 |
| 313 | 32.67 | humidity | 90 | 14400 | > th | dose dependent | sin | 9 | NA |
| 372 | 32.83 | humidity | 90 | 14400 | > th | dose dependent | rect. | 22 | 5 |
| 393 | 32.87 | temperature | 25 | 1440 | < th | dose dependent | rect. | 21 | 1 |
| 426 | 32.98 | temperature | 20 | 1440 | < th | dose dependent | rect. | 1 | 4 |
| 464 | 33.06 | humidity | 90 | 14400 | > th | dose dependent | rect. | 5 | 1 |
| 467 | 33.06 | temperature | 25 | 1440 | < th | dose dependent | rect. | 20 | 16 |
| 526 | 33.17 | humidity | 90 | 14400 | > th | dose dependent | rect. | 4 | 3 |
| 528 | 33.17 | temperature | 25 | 1440 | < th | dose dependent | rect. | 20 | 7 |
| 556 | 33.21 | temperature | 25 | 1440 | < th | dose dependent | sin | 8 | NA |
| 895 | 33.57 | temperature | 25 | 1440 | < th | dose dependent | no | NA | NA |
| 902 | 33.57 | temperature | 25 | 1440 | < th | dose dependent | rect. | 7 | 23 |
| 918 | 33.59 | temperature | 25 | 10 | < th | dose dependent | rect. | 14 | 18 |
| 953 | 33.62 | temperature | 10 | 1440 | > th | dose dependent | rect. | 21 | 6 |
| 956 | 33.62 | temperature | 25 | 1440 | < th | dose dependent | rect. | 1 | 23 |
| 958 | 33.62 | temperature | 25 | 1440 | < th | dose dependent | rect. | 23 | 23 |
| 988 | 33.65 | temperature | 25 | 1440 | < th | dose dependent | rect. | 8 | 1 |
| 993 | 33.65 | temperature | 25 | 90 | < th | dose dependent | rect. | 13 | 16 |