BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os10g0447900 Os10g0447900|AK072242
(327 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os10g0447900 Citrate transporter family protein 509 e-145
Os03g0147400 Citrate transporter family protein 385 e-107
Os02g0822100 Citrate transporter family protein 243 2e-64
Os03g0107300 Citrate transporter family protein 202 2e-52
Os10g0547500 Citrate transporter family protein 201 7e-52
>Os10g0447900 Citrate transporter family protein
Length = 327
Score = 509 bits (1312), Expect = e-145, Method: Compositional matrix adjust.
Identities = 255/327 (77%), Positives = 255/327 (77%)
Query: 1 MSHASSVNDSDCISEPIRRSESMNRADALRSRSYNSEGDIQVAIXXXXXXXXXXEMVEVS 60
MSHASSVNDSDCISEPIRRSESMNRADALRSRSYNSEGDIQVAI EMVEVS
Sbjct: 1 MSHASSVNDSDCISEPIRRSESMNRADALRSRSYNSEGDIQVAIRSLRASSLSREMVEVS 60
Query: 61 TVCXXXXXXXXXXXXXXPRKITRSTSHQRSVIIEDAPEQHQHPAGLFDGEKDKDDEAIGK 120
TVC PRKITRSTSHQRSVIIEDAPEQHQHPAGLFDGEKDKDDEAIGK
Sbjct: 61 TVCDRRDVVVDGGGGGGPRKITRSTSHQRSVIIEDAPEQHQHPAGLFDGEKDKDDEAIGK 120
Query: 121 RRRWKVIVWKYAVYXXXXXXXXXXXXXXNMSWXXXXXXXXXXXXDFTDAQACLEKVSYSL 180
RRRWKVIVWKYAVY NMSW DFTDAQACLEKVSYSL
Sbjct: 121 RRRWKVIVWKYAVYLTTLGMLAALLLGLNMSWTAITAALILLALDFTDAQACLEKVSYSL 180
Query: 181 LIFFCGMFITVDGFNKTGIPNTLWELVEPYARIDSPKGXXXXXXXXXXXSNVASNVPTVL 240
LIFFCGMFITVDGFNKTGIPNTLWELVEPYARIDSPKG SNVASNVPTVL
Sbjct: 181 LIFFCGMFITVDGFNKTGIPNTLWELVEPYARIDSPKGVVLLAIVILVLSNVASNVPTVL 240
Query: 241 LLGTRVXXXXXXXXXXXEKKAWLILAWVSTVAGNLTLLGSAANLIVCEQARRAQFFGYNL 300
LLGTRV EKKAWLILAWVSTVAGNLTLLGSAANLIVCEQARRAQFFGYNL
Sbjct: 241 LLGTRVAASAAAISPASEKKAWLILAWVSTVAGNLTLLGSAANLIVCEQARRAQFFGYNL 300
Query: 301 TFWSHLRFGVPSTIIVTAIGLLIVMSY 327
TFWSHLRFGVPSTIIVTAIGLLIVMSY
Sbjct: 301 TFWSHLRFGVPSTIIVTAIGLLIVMSY 327
>Os03g0147400 Citrate transporter family protein
Length = 557
Score = 385 bits (988), Expect = e-107, Method: Compositional matrix adjust.
Identities = 207/332 (62%), Positives = 223/332 (67%), Gaps = 18/332 (5%)
Query: 1 MSHASSVN--DSDCISEPIRRSESMNRADA---LRSRSYNSEGDIQVAIXXXXXXXXXXE 55
MSH SS+N D DCISEPI RS S+ A LRSRS NSE DIQ+AI E
Sbjct: 239 MSHVSSLNPDDMDCISEPIIRSNSVRSTSANENLRSRSVNSEADIQLAIKSLRASSMSHE 298
Query: 56 MVEVSTVCXXXXXXXXXXXXXXPRKITRSTSHQRSVIIEDAPEQHQHPAGLFDGEKDKDD 115
MVEVSTV RK TR+ S QRSVIIED+P P+ +G+K+K+D
Sbjct: 299 MVEVSTVTDRRDEGASS------RKFTRTASQQRSVIIEDSP-----PSPASNGDKEKED 347
Query: 116 EAIGKRRRWKVIVWKYAVYXXXXXXXXXXXXXXNMSWXXXXXXXXXXXXDFTDAQACLEK 175
E +RW+V VWK AVY NMSW DFTDAQACLEK
Sbjct: 348 EV--AEKRWRVFVWKTAVYLITLGMLIALLMGLNMSWTAITAALVLLALDFTDAQACLEK 405
Query: 176 VSYSLLIFFCGMFITVDGFNKTGIPNTLWELVEPYARIDSPKGXXXXXXXXXXXSNVASN 235
VSYSLLIFFCGMFITVDGFNKTGIPNTLWELVEPY+RIDS KG SNVASN
Sbjct: 406 VSYSLLIFFCGMFITVDGFNKTGIPNTLWELVEPYSRIDSAKGVALLAVVILILSNVASN 465
Query: 236 VPTVLLLGTRVXXXXXXXXXXXEKKAWLILAWVSTVAGNLTLLGSAANLIVCEQARRAQF 295
VPTVLLLGTRV E+KAWLILAWVSTVAGNLTLLGSAANLIVCEQARRAQF
Sbjct: 466 VPTVLLLGTRVAASAAAISHDSERKAWLILAWVSTVAGNLTLLGSAANLIVCEQARRAQF 525
Query: 296 FGYNLTFWSHLRFGVPSTIIVTAIGLLIVMSY 327
FGYNL+FWSHLRFGVPSTI+VTAIGLLIV SY
Sbjct: 526 FGYNLSFWSHLRFGVPSTIVVTAIGLLIVTSY 557
>Os02g0822100 Citrate transporter family protein
Length = 530
Score = 243 bits (619), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 122/215 (56%), Positives = 143/215 (66%), Gaps = 3/215 (1%)
Query: 112 DKDDEAIGKRRRWKVIVWKYAVYXXXXXXXXXXXXXXNMSWXXXXXXXXXXXXDFTDAQA 171
++ +EA+ +WK VWK VY NMSW DF DA+
Sbjct: 318 EEKEEAM---EQWKSTVWKTGVYVITLSMLVALLLGLNMSWSAITAALALIVLDFKDARP 374
Query: 172 CLEKVSYSLLIFFCGMFITVDGFNKTGIPNTLWELVEPYARIDSPKGXXXXXXXXXXXSN 231
CLEKVSY LL+FFCGMFITVDGFNKTGIP+ WE +EPYARID+P G SN
Sbjct: 375 CLEKVSYPLLLFFCGMFITVDGFNKTGIPSAFWEFMEPYARIDTPTGIVILALVILLLSN 434
Query: 232 VASNVPTVLLLGTRVXXXXXXXXXXXEKKAWLILAWVSTVAGNLTLLGSAANLIVCEQAR 291
VASNVPTVLLLG RV E AWLILAWVSTVAGNL+LLGSAANLIVCEQAR
Sbjct: 435 VASNVPTVLLLGARVAASAAAISPAAETNAWLILAWVSTVAGNLSLLGSAANLIVCEQAR 494
Query: 292 RAQFFGYNLTFWSHLRFGVPSTIIVTAIGLLIVMS 326
R++ +GY L+F+SHL+FG P+T+IVT IGLL++ S
Sbjct: 495 RSEQYGYTLSFFSHLQFGFPATLIVTGIGLLLIRS 529
>Os03g0107300 Citrate transporter family protein
Length = 472
Score = 202 bits (515), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 96/176 (54%), Positives = 119/176 (67%)
Query: 149 NMSWXXXXXXXXXXXXDFTDAQACLEKVSYSLLIFFCGMFITVDGFNKTGIPNTLWELVE 208
NMSW DF DA+ CL+ VSYSLL+FF GMFITV GFNKTG+P +W+ +
Sbjct: 294 NMSWTAITTALALVVVDFRDAEPCLDTVSYSLLVFFSGMFITVSGFNKTGLPGAIWDFMA 353
Query: 209 PYARIDSPKGXXXXXXXXXXXSNVASNVPTVLLLGTRVXXXXXXXXXXXEKKAWLILAWV 268
PY++++S G SN+ASNVPTVLL+G V +WL+LAWV
Sbjct: 354 PYSKVNSVGGISVLSVIILLLSNLASNVPTVLLMGDEVAKAAALISPAAVTTSWLLLAWV 413
Query: 269 STVAGNLTLLGSAANLIVCEQARRAQFFGYNLTFWSHLRFGVPSTIIVTAIGLLIV 324
STVAGNL+LLGSAANLIVCEQARRA Y+LTFW H+ FGVPST+IVTA+G+ ++
Sbjct: 414 STVAGNLSLLGSAANLIVCEQARRAPRNAYDLTFWQHIVFGVPSTLIVTAVGIPLI 469
>Os10g0547500 Citrate transporter family protein
Length = 485
Score = 201 bits (511), Expect = 7e-52, Method: Compositional matrix adjust.
Identities = 101/217 (46%), Positives = 130/217 (59%), Gaps = 8/217 (3%)
Query: 116 EAIGKRRRW--------KVIVWKYAVYXXXXXXXXXXXXXXNMSWXXXXXXXXXXXXDFT 167
E I + RW + + K Y NMSW DF
Sbjct: 264 ENISTKHRWFMQCSEHRRKLFLKSFAYVVTVGMLVAYMLGLNMSWTAITTAIALVVVDFR 323
Query: 168 DAQACLEKVSYSLLIFFCGMFITVDGFNKTGIPNTLWELVEPYARIDSPKGXXXXXXXXX 227
DA+ CL+KVSYSLL+FF GMF+TV GFNKTG+P +W ++ PY++I+ G
Sbjct: 324 DAEPCLDKVSYSLLVFFSGMFVTVSGFNKTGLPGAIWNVMAPYSKINHVTGVTVLSVIIL 383
Query: 228 XXSNVASNVPTVLLLGTRVXXXXXXXXXXXEKKAWLILAWVSTVAGNLTLLGSAANLIVC 287
SN+ASNVPTVLL+G V ++WL+LAWVSTVAGNL+LLGSAANLIVC
Sbjct: 384 LLSNLASNVPTVLLMGDEVAAAAATISPAAVTRSWLLLAWVSTVAGNLSLLGSAANLIVC 443
Query: 288 EQARRAQFFGYNLTFWSHLRFGVPSTIIVTAIGLLIV 324
EQARRA Y+LTFW+H+ FG+PST++VTAIG+ ++
Sbjct: 444 EQARRATRNAYDLTFWNHVIFGLPSTLVVTAIGIPLI 480
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.321 0.133 0.407
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 8,129,559
Number of extensions: 248773
Number of successful extensions: 468
Number of sequences better than 1.0e-10: 5
Number of HSP's gapped: 464
Number of HSP's successfully gapped: 5
Length of query: 327
Length of database: 17,035,801
Length adjustment: 101
Effective length of query: 226
Effective length of database: 11,762,187
Effective search space: 2658254262
Effective search space used: 2658254262
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 156 (64.7 bits)